Rmu_sc0001394.1_g000007

CW-type Zinc Finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001394.1
OG0001196
Physical Location & Seq
Forward (+)
43670 .. 45974
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001394.1_g000007.1.cds

Sequence Viewer

Length: 645 bp
ctggagattgggaaaagaggaggggttgaatttggggcaatggcgaccaagatttgcatgaatgtttcgtgtgggacgagcaatacgcatgaatggaagaatggctggcctttgcgatctggtggatttgcccatctctgctacaagtgtggagctgcatatgagaaatcagttttctgcgatacattccatttaggggaaacgggttggagggactgcagttcgtgccacaagcctctccactgtggatgcgtagcctctaggtcattatatgagtgcctggattacgggggtgtagggtgcattgcctgtgcaaacagttctcaacctcgtgtgatccagaggaatgatgtcctgaatggttttggtggactgacattaagtaatgctagtgaccgaaaatccacttctgttgaatatagagcggttggtgatacagttgatgagggcaaatttttgcaattgtgtggtactgttgatgagggaaaaaatagacctttattgcccccaagaaaacctttttttttccttttccttctcccctcattttacccaaaaaaaaaaattgatttgggcacccagaaaatgctccaggaacccatgtcaagagctagacgcgtttctcaccagaacttcggagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3 zf-CW

Protein Analysis

214

Amino Acids

23.55

Weight (kDa)

8.88

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 575
AccBSI CCGCTC 1 cut(s) 425
AccII CGCG 1 cut(s) 618
AciI CCGC 1 cut(s) 425
AclWI GGATC 1 cut(s) 331
AcsI RAATTY 2 cut(s) 29, 452
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 616
AgsI TTSAA 2 cut(s) 29, 416
AjnI CCWGG 2 cut(s) 279, 591
AluBI AGCT 3 cut(s) 155, 611, 641
AluI AGCT 3 cut(s) 155, 611, 641
AlwI GGATC 1 cut(s) 331
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 29, 452
AsuHPI GGTGA 2 cut(s) 443, 617
BaeGI GKGCMC 1 cut(s) 578
BanI GGYRCC 1 cut(s) 575
BauI CACGAG 1 cut(s) 330
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 141
BciT130I CCWGG 2 cut(s) 281, 593
BfaI CTAG 3 cut(s) 261, 390, 612
BfmI CTRYAG 1 cut(s) 217
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 281, 593
BmiI GGNNCC 2 cut(s) 577, 597
BmrFI CCNGG 2 cut(s) 281, 593
BmsI GCATC 1 cut(s) 239
BpmI CTGGAG 2 cut(s) 23, 575
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse3DI GCAATG 2 cut(s) 45, 303
BseBI CCWGG 2 cut(s) 281, 593
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 2 cut(s) 45, 303
BseRI GAGGAG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 578
BseXI GCAGC 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 618
BshFI GGCC 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 575
BslFI GGGAC 2 cut(s) 88, 227
BslI CCNNNNNNNGG 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 88, 227
BsnI GGCC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 578
Bsp143I GATC 2 cut(s) 116, 336
BspACI CCGC 1 cut(s) 425
BspANI GGCC 1 cut(s) 109
BspFNI CGCG 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 577, 597
BspMAI CTGCAG 1 cut(s) 221
BspPI GGATC 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 575
BsrBI CCGCTC 1 cut(s) 425
BsrDI GCAATG 2 cut(s) 45, 303
BssMI GATC 2 cut(s) 116, 336
BssSI CACGAG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 281, 593
Bst4CI ACNGT 4 cut(s) 245, 320, 439, 475
BstAPI GCANNNNNTGC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 107
BstF5I GGATG 1 cut(s) 254
BstFNI CGCG 1 cut(s) 618
BstKTI GATC 2 cut(s) 119, 339
BstMBI GATC 2 cut(s) 116, 336
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNI CCWGG 2 cut(s) 281, 593
BstSCI CCNGG 2 cut(s) 279, 591
BstSFI CTRYAG 1 cut(s) 217
BstSLI GKGCMC 1 cut(s) 578
BstUI CGCG 1 cut(s) 618
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 107
CseI GACGC 1 cut(s) 624
Csp6I GTAC 1 cut(s) 471
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 3 cut(s) 58, 89, 601
CviJI RGCY 7 cut(s) 105, 109, 155, 235, 257, 611, 641
CviKI_1 RGCY 7 cut(s) 105, 109, 155, 235, 257, 611, 641
CviQI GTAC 1 cut(s) 471
DpnI GATC 2 cut(s) 118, 338
DpnII GATC 2 cut(s) 116, 336
EcoRII CCWGG 2 cut(s) 279, 591
FaeI CATG 3 cut(s) 61, 92, 604
FaiI YATR 8 cut(s) 59, 90, 160, 162, 271, 273, 420, 602
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FaqI GGGAC 2 cut(s) 88, 227
FatI CATG 3 cut(s) 57, 88, 600
FauNDI CATATG 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 261, 390, 612
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 2 cut(s) 23, 575
HaeIII GGCC 1 cut(s) 109
HgaI GACGC 1 cut(s) 624
Hin1II CATG 3 cut(s) 61, 92, 604
HphI GGTGA 2 cut(s) 443, 617
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 1 cut(s) 638
Hpy188III TCNNGA 3 cut(s) 340, 355, 606
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 4 cut(s) 245, 320, 439, 475
HpyCH4V TGCA 6 cut(s) 57, 158, 219, 303, 314, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
Hsp92II CATG 3 cut(s) 61, 92, 604
Kzo9I GATC 2 cut(s) 116, 336
LmnI GCTCC 3 cut(s) 152, 594, 638
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 239
MaeI CTAG 3 cut(s) 261, 390, 612
MaeIII GTNAC 1 cut(s) 392
MalI GATC 2 cut(s) 118, 338
MbiI CCGCTC 1 cut(s) 425
MboI GATC 2 cut(s) 116, 336
MboII GAAGA 1 cut(s) 109
MfeI CAATTG 1 cut(s) 461
MhlI GDGCHC 1 cut(s) 578
MluCI AATT 4 cut(s) 29, 452, 461, 564
MluI ACGCGT 1 cut(s) 616
MmeI TCCRAC 1 cut(s) 188
MseI TTAA 2 cut(s) 380, 643
MspR9I CCNGG 2 cut(s) 281, 593
MunI CAATTG 1 cut(s) 461
MvaI CCWGG 2 cut(s) 281, 593
MvnI CGCG 1 cut(s) 618
MwoI GCNNNNNNNGC 1 cut(s) 225
NdeI CATATG 1 cut(s) 160
NdeII GATC 2 cut(s) 116, 336
NlaIII CATG 3 cut(s) 61, 92, 604
NlaIV GGNNCC 2 cut(s) 577, 597
NmuCI GTSAC 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 591
PkrI GCNGC 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 279, 591
PspGI CCWGG 2 cut(s) 279, 591
PspN4I GGNNCC 2 cut(s) 577, 597
PstI CTGCAG 1 cut(s) 221
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
SaqAI TTAA 2 cut(s) 380, 643
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 116, 336
ScrFI CCNGG 2 cut(s) 281, 593
SduI GDGCHC 1 cut(s) 578
SetI ASST 7 cut(s) 157, 266, 331, 499, 520, 613, 643
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 1 cut(s) 217
Sse9I AATT 4 cut(s) 29, 452, 461, 564
SsiI CCGC 1 cut(s) 425
SspMI CTAG 3 cut(s) 261, 390, 612
StyD4I CCNGG 2 cut(s) 279, 591
TaaI ACNGT 4 cut(s) 245, 320, 439, 475
TaqII GACCGA 1 cut(s) 411
TasI AATT 4 cut(s) 29, 452, 461, 564
Tru1I TTAA 2 cut(s) 380, 643
Tru9I TTAA 2 cut(s) 380, 643
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 2 cut(s) 74, 105
TspRI CASTG 1 cut(s) 248
XapI RAATTY 2 cut(s) 29, 452
XspI CTAG 3 cut(s) 261, 390, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.