B3 DNA binding domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf_VAL1_N | PF25813 | 47 - 91 | 2.1e-21 | VAL1-like, N-terminal zinc finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 105 |
| AcuI | CTGAAG | 1 cut(s) | 279 |
| AluBI | AGCT | 3 cut(s) | 14, 67, 91 |
| AluI | AGCT | 3 cut(s) | 14, 67, 91 |
| Alw21I | GWGCWC | 1 cut(s) | 69 |
| AoxI | GGCC | 1 cut(s) | 84 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 141 |
| AspS9I | GGNCC | 1 cut(s) | 85 |
| BanII | GRGCYC | 1 cut(s) | 69 |
| Bbv12I | GWGCWC | 1 cut(s) | 69 |
| BccI | CCATC | 1 cut(s) | 68 |
| BclI | TGATCA | 2 cut(s) | 43, 280 |
| BfaI | CTAG | 1 cut(s) | 272 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| BmgT120I | GGNCC | 1 cut(s) | 85 |
| BpmI | CTGGAG | 1 cut(s) | 184 |
| BpuEI | CTTGAG | 1 cut(s) | 53 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 157, 187 |
| Bse1I | ACTGG | 1 cut(s) | 240 |
| BseGI | GGATG | 1 cut(s) | 79 |
| BseNI | ACTGG | 1 cut(s) | 240 |
| BseYI | CCCAGC | 2 cut(s) | 60, 87 |
| BshFI | GGCC | 1 cut(s) | 86 |
| BsiHKAI | GWGCWC | 1 cut(s) | 69 |
| BsmI | GAATGC | 1 cut(s) | 318 |
| BsnI | GGCC | 1 cut(s) | 86 |
| Bsp1286I | GDGCHC | 1 cut(s) | 69 |
| Bsp143I | GATC | 2 cut(s) | 43, 280 |
| BspACI | CCGC | 1 cut(s) | 105 |
| BspANI | GGCC | 1 cut(s) | 86 |
| BsrI | ACTGG | 1 cut(s) | 240 |
| BssMI | GATC | 2 cut(s) | 43, 280 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 102, 264 |
| BstF5I | GGATG | 1 cut(s) | 79 |
| BstKTI | GATC | 2 cut(s) | 46, 283 |
| BstMBI | GATC | 2 cut(s) | 43, 280 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 11, 27, 102, 264 |
| BsuRI | GGCC | 1 cut(s) | 86 |
| BtsCI | GGATG | 1 cut(s) | 79 |
| BtsIMutI | CAGTG | 1 cut(s) | 233 |
| Cfr13I | GGNCC | 1 cut(s) | 85 |
| CviAII | CATG | 2 cut(s) | 148, 216 |
| CviJI | RGCY | 8 cut(s) | 5, 14, 60, 67, 86, 91, 162, 190 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 14, 60, 67, 86, 91, 162, 190 |
| DpnI | GATC | 2 cut(s) | 45, 282 |
| DpnII | GATC | 2 cut(s) | 43, 280 |
| Ecl136II | GAGCTC | 1 cut(s) | 67 |
| Eco24I | GRGCYC | 1 cut(s) | 69 |
| Eco53kI | GAGCTC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 1 cut(s) | 279 |
| EcoICRI | GAGCTC | 1 cut(s) | 67 |
| EcoT38I | GRGCYC | 1 cut(s) | 69 |
| FaeI | CATG | 2 cut(s) | 151, 219 |
| FaiI | YATR | 6 cut(s) | 117, 128, 149, 212, 217, 228 |
| FatI | CATG | 2 cut(s) | 147, 215 |
| FbaI | TGATCA | 2 cut(s) | 43, 280 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| FokI | GGATG | 1 cut(s) | 86 |
| FriOI | GRGCYC | 1 cut(s) | 69 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| FspBI | CTAG | 1 cut(s) | 272 |
| GluI | GCNGC | 1 cut(s) | 6 |
| GsaI | CCCAGC | 2 cut(s) | 64, 91 |
| GsuI | CTGGAG | 1 cut(s) | 184 |
| HaeIII | GGCC | 1 cut(s) | 86 |
| Hin1II | CATG | 2 cut(s) | 151, 219 |
| HindIII | AAGCTT | 1 cut(s) | 12 |
| Hpy188I | TCNGA | 1 cut(s) | 245 |
| HpyAV | CCTTC | 1 cut(s) | 152 |
| HpyCH4V | TGCA | 5 cut(s) | 30, 96, 207, 230, 258 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 11, 27, 102, 264 |
| Hsp92II | CATG | 2 cut(s) | 151, 219 |
| Ksp22I | TGATCA | 2 cut(s) | 43, 280 |
| Kzo9I | GATC | 2 cut(s) | 43, 280 |
| LmnI | GCTCC | 1 cut(s) | 64 |
| LpnPI | CCDG | 7 cut(s) | 40, 46, 101, 148, 221, 282, 322 |
| MaeI | CTAG | 1 cut(s) | 272 |
| MalI | GATC | 2 cut(s) | 45, 282 |
| MboI | GATC | 2 cut(s) | 43, 280 |
| MhlI | GDGCHC | 1 cut(s) | 69 |
| MnlI | CCTC | 1 cut(s) | 239 |
| MroXI | GAANNNNTTC | 1 cut(s) | 141 |
| MseI | TTAA | 1 cut(s) | 54 |
| MslI | CAYNNNNRTG | 1 cut(s) | 225 |
| Mva1269I | GAATGC | 1 cut(s) | 318 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 11, 27, 102, 264 |
| NdeII | GATC | 2 cut(s) | 43, 280 |
| NlaIII | CATG | 2 cut(s) | 151, 219 |
| PctI | GAATGC | 1 cut(s) | 318 |
| PdmI | GAANNNNTTC | 1 cut(s) | 141 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| Psp124BI | GAGCTC | 1 cut(s) | 69 |
| PspFI | CCCAGC | 2 cut(s) | 60, 87 |
| PspPI | GGNCC | 1 cut(s) | 85 |
| RseI | CAYNNNNRTG | 1 cut(s) | 225 |
| SacI | GAGCTC | 1 cut(s) | 69 |
| SaqAI | TTAA | 1 cut(s) | 54 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 2 cut(s) | 43, 280 |
| Sau96I | GGNCC | 1 cut(s) | 85 |
| SduI | GDGCHC | 1 cut(s) | 69 |
| SetI | ASST | 7 cut(s) | 16, 69, 93, 250, 256, 301, 331 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 225 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| SsiI | CCGC | 1 cut(s) | 105 |
| SspMI | CTAG | 1 cut(s) | 272 |
| SstI | GAGCTC | 1 cut(s) | 69 |
| TaqI | TCGA | 1 cut(s) | 301 |
| Tru1I | TTAA | 1 cut(s) | 54 |
| Tru9I | TTAA | 1 cut(s) | 54 |
| TscAI | CASTG | 1 cut(s) | 240 |
| TseI | GCWGC | 1 cut(s) | 5 |
| TspGWI | ACGGA | 1 cut(s) | 170 |
| TspRI | CASTG | 1 cut(s) | 240 |
| XmnI | GAANNNNTTC | 1 cut(s) | 141 |
| XspI | CTAG | 1 cut(s) | 272 |