Rh5CG276100

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001196
Physical Location & Seq
Reverse (-)
30000589 .. 30003058
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG276100.1

Sequence Viewer

Length: 210 bp
ATGGCTGCCAAAGCTTCGTGCTTTTCCTGCAAGGCCGAGAGTGATCAGTTCGTTAATGGCTGGGAGCTCAAGGATGGGTCTTTCGCCCAGCTCTGCAAGAAATGCGGGTCAGCCCAGTTTTACGTCTTTAATTTTGTGATGATATTGCAACAATTGGGACCTAATGTCTTGAATCCGCACAAGGAAGTTAATTCAAACAGAAATCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

69

Amino Acids

7.69

Weight (kDa)

8.43

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 105, 176
AgsI TTSAA 2 cut(s) 172, 195
AhdI GACNNNNNGTC 1 cut(s) 164
AluBI AGCT 3 cut(s) 14, 67, 91
AluI AGCT 3 cut(s) 14, 67, 91
Alw21I GWGCWC 1 cut(s) 69
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 158
AvaII GGWCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BccI CCATC 1 cut(s) 68
BclI TGATCA 1 cut(s) 43
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 158
BmeRI GACNNNNNGTC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 159
BmrI ACTGGG 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 115
BseYI CCCAGC 2 cut(s) 60, 87
BshFI GGCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 69
BslFI GGGAC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 2 cut(s) 105, 176
BspANI GGCC 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 115
BssMI GATC 1 cut(s) 43
BstAPI GCANNNNNTGC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 11, 27, 102
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 158
CviJI RGCY 7 cut(s) 5, 14, 35, 60, 67, 91, 113
CviKI_1 RGCY 7 cut(s) 5, 14, 35, 60, 67, 91, 113
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
DriI GACNNNNNGTC 1 cut(s) 164
Eam1105I GACNNNNNGTC 1 cut(s) 164
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 158
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 69
FaqI GGGAC 1 cut(s) 171
FauI CCCGC 1 cut(s) 98
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 2 cut(s) 64, 91
HaeIII GGCC 1 cut(s) 35
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 30, 96, 148
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 27, 102
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 40, 46, 101, 128
MaeII ACGT 1 cut(s) 123
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MfeI CAATTG 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 3 cut(s) 130, 152, 190
MseI TTAA 3 cut(s) 54, 129, 189
MunI CAATTG 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 11, 27, 102
NdeII GATC 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 159
NmeAIII GCCGAG 1 cut(s) 61
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 158
PspFI CCCAGC 2 cut(s) 60, 87
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 158
PspPPI RGGWCCY 1 cut(s) 158
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 54, 129, 189
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 69
SetI ASST 5 cut(s) 16, 69, 93, 126, 163
SinI GGWCC 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 3 cut(s) 130, 152, 190
SsiI CCGC 2 cut(s) 105, 176
SstI GAGCTC 1 cut(s) 69
TaiI ACGT 1 cut(s) 126
TasI AATT 3 cut(s) 130, 152, 190
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 3 cut(s) 54, 129, 189
Tru9I TTAA 3 cut(s) 54, 129, 189
TseI GCWGC 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.