B3 DNA binding domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 107 |
| AcuI | CTGAAG | 1 cut(s) | 143 |
| AfaI | GTAC | 2 cut(s) | 57, 103 |
| AgsI | TTSAA | 1 cut(s) | 161 |
| AjnI | CCWGG | 2 cut(s) | 201, 246 |
| Alw26I | GTCTC | 2 cut(s) | 34, 266 |
| ApoI | RAATTY | 1 cut(s) | 107 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 219, 252 |
| BciT130I | CCWGG | 2 cut(s) | 203, 248 |
| BcoDI | GTCTC | 2 cut(s) | 34, 266 |
| BfmI | CTRYAG | 2 cut(s) | 177, 222 |
| BlpI | GCTNAGC | 1 cut(s) | 12 |
| Bme1390I | CCNGG | 2 cut(s) | 203, 248 |
| BmrFI | CCNGG | 2 cut(s) | 203, 248 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 12 |
| BsaBI | GATNNNNATC | 1 cut(s) | 93 |
| BsaJI | CCNNGG | 4 cut(s) | 59, 149, 247, 260 |
| Bse8I | GATNNNNATC | 1 cut(s) | 93 |
| BseBI | CCWGG | 2 cut(s) | 203, 248 |
| BseDI | CCNNGG | 4 cut(s) | 59, 149, 247, 260 |
| BseJI | GATNNNNATC | 1 cut(s) | 93 |
| BslFI | GGGAC | 2 cut(s) | 167, 264 |
| BsmAI | GTCTC | 2 cut(s) | 34, 266 |
| BsmFI | GGGAC | 2 cut(s) | 167, 264 |
| Bsp143I | GATC | 1 cut(s) | 49 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 12 |
| BspCNI | CTCAG | 1 cut(s) | 4 |
| BspMAI | CTGCAG | 1 cut(s) | 226 |
| BssECI | CCNNGG | 4 cut(s) | 59, 149, 247, 260 |
| BssMI | GATC | 1 cut(s) | 49 |
| BssT1I | CCWWGG | 2 cut(s) | 149, 260 |
| Bst2UI | CCWGG | 2 cut(s) | 203, 248 |
| Bst4CI | ACNGT | 2 cut(s) | 82, 101 |
| BstC8I | GCNNGC | 1 cut(s) | 222 |
| BstDEI | CTNAG | 1 cut(s) | 12 |
| BstKTI | GATC | 1 cut(s) | 52 |
| BstMAI | GTCTC | 2 cut(s) | 34, 266 |
| BstMBI | GATC | 1 cut(s) | 49 |
| BstNI | CCWGG | 2 cut(s) | 203, 248 |
| BstSCI | CCNGG | 2 cut(s) | 201, 246 |
| BstSFI | CTRYAG | 2 cut(s) | 177, 222 |
| Cac8I | GCNNGC | 1 cut(s) | 222 |
| Csp6I | GTAC | 2 cut(s) | 56, 102 |
| CviJI | RGCY | 1 cut(s) | 11 |
| CviKI_1 | RGCY | 1 cut(s) | 11 |
| CviQI | GTAC | 2 cut(s) | 56, 102 |
| DdeI | CTNAG | 1 cut(s) | 12 |
| DpnI | GATC | 1 cut(s) | 51 |
| DpnII | GATC | 1 cut(s) | 49 |
| Eco130I | CCWWGG | 2 cut(s) | 149, 260 |
| Eco57I | CTGAAG | 1 cut(s) | 143 |
| EcoRII | CCWGG | 2 cut(s) | 201, 246 |
| EcoT14I | CCWWGG | 2 cut(s) | 149, 260 |
| ErhI | CCWWGG | 2 cut(s) | 149, 260 |
| FaiI | YATR | 2 cut(s) | 132, 269 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 268, 300 |
| FaqI | GGGAC | 2 cut(s) | 167, 264 |
| Hpy188I | TCNGA | 4 cut(s) | 49, 192, 303, 310 |
| Hpy188III | TCNNGA | 1 cut(s) | 33 |
| HpyCH4III | ACNGT | 2 cut(s) | 82, 101 |
| HpyCH4V | TGCA | 2 cut(s) | 134, 224 |
| HpyF3I | CTNAG | 1 cut(s) | 12 |
| Kzo9I | GATC | 1 cut(s) | 49 |
| LpnPI | CCDG | 7 cut(s) | 18, 188, 189, 215, 233, 234, 260 |
| MalI | GATC | 1 cut(s) | 51 |
| MboI | GATC | 1 cut(s) | 49 |
| MboII | GAAGA | 1 cut(s) | 136 |
| MluCI | AATT | 3 cut(s) | 107, 318, 325 |
| MmeI | TCCRAC | 3 cut(s) | 194, 239, 305 |
| MnlI | CCTC | 2 cut(s) | 69, 130 |
| MseI | TTAA | 1 cut(s) | 41 |
| MspR9I | CCNGG | 2 cut(s) | 203, 248 |
| MvaI | CCWGG | 2 cut(s) | 203, 248 |
| NdeII | GATC | 1 cut(s) | 49 |
| Psp6I | CCWGG | 2 cut(s) | 201, 246 |
| PspGI | CCWGG | 2 cut(s) | 201, 246 |
| PstI | CTGCAG | 1 cut(s) | 226 |
| RsaI | GTAC | 2 cut(s) | 57, 103 |
| RsaNI | GTAC | 2 cut(s) | 56, 102 |
| SaqAI | TTAA | 1 cut(s) | 41 |
| Sau3AI | GATC | 1 cut(s) | 49 |
| ScrFI | CCNGG | 2 cut(s) | 203, 248 |
| SetI | ASST | 3 cut(s) | 61, 178, 318 |
| SfcI | CTRYAG | 2 cut(s) | 177, 222 |
| Sse9I | AATT | 3 cut(s) | 107, 318, 325 |
| StyD4I | CCNGG | 2 cut(s) | 201, 246 |
| StyI | CCWWGG | 2 cut(s) | 149, 260 |
| TaaI | ACNGT | 2 cut(s) | 82, 101 |
| TasI | AATT | 3 cut(s) | 107, 318, 325 |
| TatI | WGTACW | 1 cut(s) | 101 |
| Tru1I | TTAA | 1 cut(s) | 41 |
| Tru9I | TTAA | 1 cut(s) | 41 |
| XapI | RAATTY | 1 cut(s) | 107 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 29 |