Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Reverse (-)

14813001 .. 14813820

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23278

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGATTCCGGCGGTGCACTGCCGATCCTAGTCGGCGATTGGTGGAAGAGAGGTGGCGACATCGACATCGGCCAAGGCTGGCTTCTGCGTCCTTGCACGGTGACGGCTGGGCTTTAATTTGGTGGCTGATTTGGTTGCGGTCACTGCCGGGATCGGAGATGGCAGAGCGTCTTGGTGCCTTGCGTTGGGTGCCCAGAGTAATCGAGGTGTTCCTAGTAGGCTGGTGTTGGGTTCACACCAATATGTTGGTCAAAACTTTCCCACGGGTTTGGATTTGGGACCCGGGTGACCCTTTGCCAGACTCTGTGTTATGTTGGATTATCCCTTTGAGTGTGCTGCGGTTATTTTCAGGTGGATCGAGCCTTCCTAGATTCTACAAAAAGTCTTGGCATAGTCACGCTGTGAGTATCACAATTGCGTGCATTGGCGAGCAGTGTTCTTTATGCTGGGTCGAGTTTAGGTTTGATTGGTCTGCTGATCTTCTGCATGCCCGGATCGCAAATTCTGATTGTTGGGTCTACAATTTTCAAGGTCATGACAATGGTTCCGTTGTTGGTAATTATCTTGAGGATGATGAGGATTTACCTTCTGAATTTGCTAGTTTTTCTAGAAAAGTTTCAAAGCAGAGTTTTATTGTACAAGAACAACCGGTTGATGTAGTACATCTTCTAGTTTGTTCTATCTTAGCTCTAGCACCTAGGCGTTTCTTGTCTTTGTATGCTCCCCATTGGGATGCCCTCTTAAGCGATTTCAATCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

29.36

Weight (kDa)

7.66

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	176, 190
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	3 cut(s)	13, 139, 340
AclWI	GGATC	4 cut(s)	20, 160, 364, 503
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	502, 593
AdeI	CACNNNGTG	1 cut(s)	403
AfaI	GTAC	2 cut(s)	639, 663
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflII	CTTAAG	1 cut(s)	742
AgeI	ACCGGT	1 cut(s)	649
AgsI	TTSAA	3 cut(s)	530, 621, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AluBI	AGCT	1 cut(s)	689
AluI	AGCT	1 cut(s)	689
Alw21I	GWGCWC	1 cut(s)	20
Alw44I	GTGCAC	1 cut(s)	16
AlwI	GGATC	4 cut(s)	20, 160, 364, 503
AlwNI	CAGNNNCTG	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	283
AoxI	GGCC	1 cut(s)	71
ApaLI	GTGCAC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	2 cut(s)	502, 593
AsiGI	ACCGGT	1 cut(s)	649
Asp700I	GAANNNNTTC	1 cut(s)	616
AspA2I	CCTAGG	1 cut(s)	698
AspS9I	GGNCC	1 cut(s)	280
AsuC2I	CCSGG	4 cut(s)	150, 284, 285, 493
AsuHPI	GGTGA	2 cut(s)	113, 299
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	280
AvrII	CCTAGG	1 cut(s)	698
BaeGI	GKGCMC	2 cut(s)	20, 195
BanI	GGYRCC	2 cut(s)	176, 190
BarI	GAAGNNNNNNTAC	2 cut(s)	651, 683
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	121
BcnI	CCSGG	4 cut(s)	150, 284, 285, 493
BfaI	CTAG	8 cut(s)	30, 215, 369, 600, 609, 671, 692, 699
BfrI	CTTAAG	1 cut(s)	742
BisI	GCNGC	1 cut(s)	338
BlnI	CCTAGG	1 cut(s)	698
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	4 cut(s)	150, 284, 285, 493
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	5 cut(s)	178, 192, 281, 282, 547
BmrFI	CCNGG	4 cut(s)	150, 284, 285, 493
BmsI	GCATC	1 cut(s)	724
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	4 cut(s)	150, 284, 285, 493
BsaBI	GATNNNNATC	1 cut(s)	753
BsaJI	CCNNGG	4 cut(s)	74, 263, 283, 698
BsaWI	WCCGGW	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	649
Bse8I	GATNNNNATC	1 cut(s)	753
BseDI	CCNNGG	4 cut(s)	74, 263, 283, 698
BseGI	GGATG	2 cut(s)	577, 739
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseSI	GKGCMC	2 cut(s)	20, 195
BseXI	GCAGC	1 cut(s)	324
BseYI	CCCAGC	2 cut(s)	108, 447
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	2 cut(s)	176, 190
BshTI	ACCGGT	1 cut(s)	649
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	5 cut(s)	10, 149, 284, 493, 650
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	283
Bsp1286I	GDGCHC	2 cut(s)	20, 195
Bsp1407I	TGTACA	1 cut(s)	637
Bsp143I	GATC	5 cut(s)	25, 152, 356, 478, 495
BspACI	CCGC	3 cut(s)	13, 139, 340
BspANI	GGCC	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	5 cut(s)	178, 192, 281, 282, 547
BspPI	GGATC	4 cut(s)	20, 160, 364, 503
BspT107I	GGYRCC	2 cut(s)	176, 190
BspTI	CTTAAG	1 cut(s)	742
BsrFI	RCCGGY	1 cut(s)	649
BsrGI	TGTACA	1 cut(s)	637
BssAI	RCCGGY	1 cut(s)	649
BssECI	CCNNGG	4 cut(s)	74, 263, 283, 698
BssMI	GATC	5 cut(s)	25, 152, 356, 478, 495
BssT1I	CCWWGG	2 cut(s)	74, 698
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	742
BstAUI	TGTACA	1 cut(s)	637
BstC8I	GCNNGC	4 cut(s)	81, 421, 431, 489
BstDEI	CTNAG	1 cut(s)	685
BstDSI	CCRYGG	1 cut(s)	263
BstEII	GGTNACC	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	577, 739
BstKTI	GATC	5 cut(s)	28, 155, 359, 481, 498
BstMBI	GATC	5 cut(s)	25, 152, 356, 478, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 190, 497
BstNSI	RCATGY	1 cut(s)	491
BstPI	GGTNACC	1 cut(s)	287
BstSCI	CCNGG	4 cut(s)	148, 282, 283, 491
BstSLI	GKGCMC	2 cut(s)	20, 195
BstV1I	GCAGC	1 cut(s)	324
BstXI	CCANNNNNNTGG	2 cut(s)	247, 270
BsuRI	GGCC	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	577, 739
BtsI	GCAGTG	3 cut(s)	18, 143, 440
BtsIMutI	CAGTG	3 cut(s)	18, 143, 440
Cac8I	GCNNGC	4 cut(s)	81, 421, 431, 489
CaiI	CAGNNNCTG	1 cut(s)	305
CciI	TCATGA	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	649
Cfr13I	GGNCC	1 cut(s)	280
Cfr9I	CCCGGG	1 cut(s)	283
CseI	GACGC	2 cut(s)	78, 158
Csp6I	GTAC	2 cut(s)	638, 662
CspAI	ACCGGT	1 cut(s)	649
CviAII	CATG	2 cut(s)	488, 536
CviJI	RGCY	9 cut(s)	73, 79, 83, 108, 113, 127, 222, 363, 689
CviKI_1	RGCY	9 cut(s)	73, 79, 83, 108, 113, 127, 222, 363, 689
CviQI	GTAC	2 cut(s)	638, 662
DdeI	CTNAG	1 cut(s)	685
DpnI	GATC	5 cut(s)	27, 154, 358, 480, 497
DpnII	GATC	5 cut(s)	25, 152, 356, 478, 495
DraIII	CACNNNGTG	1 cut(s)	403
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	74, 698
Eco47I	GGWCC	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	283
Eco91I	GGTNACC	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	280
EcoO65I	GGTNACC	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	74, 698
ErhI	CCWWGG	2 cut(s)	74, 698
FaeI	CATG	2 cut(s)	491, 539
FaiI	YATR	7 cut(s)	245, 313, 393, 445, 489, 537, 720
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	2 cut(s)	487, 535
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	2 cut(s)	584, 746
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	8 cut(s)	30, 215, 369, 600, 609, 671, 692, 699
GluI	GCNGC	1 cut(s)	338
GsaI	CCCAGC	2 cut(s)	112, 451
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	5 cut(s)	10, 149, 284, 493, 650
HgaI	GACGC	2 cut(s)	78, 158
Hin1II	CATG	2 cut(s)	491, 539
HinfI	GANTC	3 cut(s)	6, 302, 372
HpaII	CCGG	5 cut(s)	10, 149, 284, 493, 650
HphI	GGTGA	2 cut(s)	113, 299
Hpy166II	GTNNAC	3 cut(s)	18, 235, 520
Hpy188I	TCNGA	3 cut(s)	157, 508, 592
Hpy188III	TCNNGA	3 cut(s)	536, 566, 609
Hpy8I	GTNNAC	3 cut(s)	18, 235, 520
HpyAV	CCTTC	2 cut(s)	374, 597
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	4 cut(s)	18, 97, 423, 487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 190, 497
HpyF3I	CTNAG	1 cut(s)	685
Hsp92II	CATG	2 cut(s)	491, 539
KflI	GGGWCCC	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	25, 152, 356, 478, 495
LmnI	GCTCC	1 cut(s)	727
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	8 cut(s)	30, 215, 369, 600, 609, 671, 692, 699
MaeIII	GTNAC	4 cut(s)	101, 141, 287, 395
MalI	GATC	5 cut(s)	27, 154, 358, 480, 497
MboI	GATC	5 cut(s)	25, 152, 356, 478, 495
MboII	GAAGA	3 cut(s)	59, 473, 659
MfeI	CAATTG	1 cut(s)	414
MhlI	GDGCHC	2 cut(s)	20, 195
MluCI	AATT	6 cut(s)	117, 414, 502, 523, 559, 593
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	5 cut(s)	45, 199, 562, 571, 749
MroXI	GAANNNNTTC	1 cut(s)	616
MseI	TTAA	2 cut(s)	116, 743
MslI	CAYNNNNRTG	3 cut(s)	242, 540, 732
MspCI	CTTAAG	1 cut(s)	742
MspI	CCGG	5 cut(s)	10, 149, 284, 493, 650
MspR9I	CCNGG	4 cut(s)	150, 284, 285, 493
MunI	CAATTG	1 cut(s)	414
MwoI	GCNNNNNNNGC	3 cut(s)	145, 190, 497
NciI	CCSGG	4 cut(s)	150, 284, 285, 493
NdeII	GATC	5 cut(s)	25, 152, 356, 478, 495
NlaIII	CATG	2 cut(s)	491, 539
NlaIV	GGNNCC	5 cut(s)	178, 192, 281, 282, 547
NmuCI	GTSAC	4 cut(s)	101, 141, 287, 395
NspI	RCATGY	1 cut(s)	491
PaeI	GCATGC	1 cut(s)	491
PagI	TCATGA	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	616
PfeI	GAWTC	2 cut(s)	6, 372
PinAI	ACCGGT	1 cut(s)	649
PkrI	GCNGC	1 cut(s)	339
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
PspEI	GGTNACC	1 cut(s)	287
PspFI	CCCAGC	2 cut(s)	108, 447
PspN4I	GGNNCC	5 cut(s)	178, 192, 281, 282, 547
PspPI	GGNCC	1 cut(s)	280
PspPPI	RGGWCCY	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	639, 663
RsaNI	GTAC	2 cut(s)	638, 662
RseI	CAYNNNNRTG	3 cut(s)	242, 540, 732
SaqAI	TTAA	2 cut(s)	116, 743
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	5 cut(s)	25, 152, 356, 478, 495
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	4 cut(s)	150, 284, 285, 493
SduI	GDGCHC	2 cut(s)	20, 195
SetI	ASST	8 cut(s)	56, 210, 355, 464, 535, 589, 691, 700
SfaNI	GCATC	1 cut(s)	724
SinI	GGWCC	1 cut(s)	280
SmaI	CCCGGG	1 cut(s)	285
SmiMI	CAYNNNNRTG	3 cut(s)	242, 540, 732
SmlI	CTYRAG	2 cut(s)	566, 742
SmoI	CTYRAG	2 cut(s)	566, 742
SphI	GCATGC	1 cut(s)	491
Sse9I	AATT	6 cut(s)	117, 414, 502, 523, 559, 593
SsiI	CCGC	3 cut(s)	13, 139, 340
SspMI	CTAG	8 cut(s)	30, 215, 369, 600, 609, 671, 692, 699
StyD4I	CCNGG	4 cut(s)	148, 282, 283, 491
StyI	CCWWGG	2 cut(s)	74, 698
TaaI	ACNGT	1 cut(s)	101
TaqI	TCGA	4 cut(s)	64, 204, 359, 453
TasI	AATT	6 cut(s)	117, 414, 502, 523, 559, 593
TatI	WGTACW	2 cut(s)	637, 661
TfiI	GAWTC	2 cut(s)	6, 372
Tru1I	TTAA	2 cut(s)	116, 743
Tru9I	TTAA	2 cut(s)	116, 743
TscAI	CASTG	3 cut(s)	25, 150, 440
TseFI	GTSAC	4 cut(s)	101, 141, 287, 395
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	4 cut(s)	101, 141, 287, 395
TspGWI	ACGGA	1 cut(s)	538
TspMI	CCCGGG	1 cut(s)	283
TspRI	CASTG	3 cut(s)	25, 150, 440
Vha464I	CTTAAG	1 cut(s)	742
VneI	GTGCAC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	2 cut(s)	502, 593
XbaI	TCTAGA	1 cut(s)	608
XceI	RCATGY	1 cut(s)	491
XmaI	CCCGGG	1 cut(s)	283
XmaJI	CCTAGG	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	519
XmnI	GAANNNNTTC	1 cut(s)	616
XspI	CTAG	8 cut(s)	30, 215, 369, 600, 609, 671, 692, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.