Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Reverse (-)

44413114 .. 44413730

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGAGAGAGCGAGAGCTCTCTAAACCTTAGCACCGCCACCCATGGGTATCCTCTTTGGAGGCCTCCTTCGCCTTCTCTCCAGCGTCCGCTCAGGCGTACGAGTTCTCTTCAATATGGCTGCACGCCATTCATCCTTCGACGGGATGATTTTCTGACGACGGTAAGGGATCTGATTAGCCGGTTGTCCTTTGCGATATGCCTTCAGGTTTGGGGCTTTCTGGTGGTGTGGGATCCTAGCGGTACTCTGGTTGGATTGCAGCCGTTCTTGGCCAGCGAGTGGTGGAGAAGAGATCGGTCAACAAGCGGGCAGTTCTGGTTCATATTGGTGCAGGCACGACTGGTGGAATTCAGTTCGCTGGCGTTGGTGCTTGGGTTCTCTGTGTGGGGTGCCCAGAGTAATCTGGGTTATCCTTATGGGCTGGTGGTGGGCCCATCTGCTGGGCCAGACCTTTCCATGGGTTTGGATCTGGGACCCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.72

Weight (kDa)

7.82

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	389
AccB7I	CCANNNNNTGG	2 cut(s)	279, 440
AccBSI	CCGCTC	1 cut(s)	91
AciI	CCGC	4 cut(s)	36, 89, 240, 306
AclWI	GGATC	4 cut(s)	177, 227, 240, 474
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	2 cut(s)	100, 244
AfiI	CCNNNNNNNGG	5 cut(s)	45, 142, 279, 440, 457
AgsI	TTSAA	1 cut(s)	113
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	4 cut(s)	177, 227, 240, 474
Ama87I	CYCGRG	1 cut(s)	476
AoxI	GGCC	4 cut(s)	62, 270, 430, 443
ApaI	GGGCCC	1 cut(s)	434
ApeKI	GCWGC	2 cut(s)	120, 259
ApoI	RAATTY	1 cut(s)	347
AspS9I	GGNCC	4 cut(s)	430, 431, 443, 473
AsuC2I	CCSGG	2 cut(s)	477, 478
AvaI	CYCGRG	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	473
BaeGI	GKGCMC	2 cut(s)	394, 434
BaeI	ACNNNNGTAYC	2 cut(s)	234, 267
BalI	TGGCCA	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	2 cut(s)	20, 434
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	107, 271
BccI	CCATC	1 cut(s)	442
BceAI	ACGGC	1 cut(s)	247
BciVI	GTATCC	1 cut(s)	60
BcnI	CCSGG	2 cut(s)	477, 478
BfaI	CTAG	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	60
BisI	GCNGC	2 cut(s)	121, 260
BlsI	GCNGC	2 cut(s)	122, 261
Bme1390I	CCNGG	2 cut(s)	477, 478
Bme18I	GGWCC	1 cut(s)	473
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	4 cut(s)	430, 431, 443, 473
BmiI	GGNNCC	5 cut(s)	234, 391, 432, 474, 475
BmrFI	CCNGG	2 cut(s)	477, 478
BpmI	CTGGAG	1 cut(s)	65
Bpu10I	CCTNAGC	2 cut(s)	29, 92
BpuMI	CCSGG	2 cut(s)	477, 478
BsaJI	CCNNGG	3 cut(s)	43, 456, 476
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 142, 279, 440, 457
Bse118I	RCCGGY	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	345
BseDI	CCNNGG	3 cut(s)	43, 456, 476
BseGI	GGATG	2 cut(s)	132, 151
BseLI	CCNNNNNNNGG	5 cut(s)	45, 142, 279, 440, 457
BseMII	CTCAG	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	345
BseSI	GKGCMC	2 cut(s)	394, 434
BseXI	GCAGC	2 cut(s)	107, 271
BseYI	CCCAGC	1 cut(s)	440
BsgI	GTGCAG	2 cut(s)	106, 350
BshFI	GGCC	4 cut(s)	64, 272, 432, 445
BshNI	GGYRCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	476
BsiSI	CCGG	2 cut(s)	181, 477
BsiWI	CGTACG	1 cut(s)	98
BslI	CCNNNNNNNGG	5 cut(s)	45, 142, 279, 440, 457
BsnI	GGCC	4 cut(s)	64, 272, 432, 445
BsoBI	CYCGRG	1 cut(s)	476
Bsp120I	GGGCCC	1 cut(s)	430
Bsp1286I	GDGCHC	3 cut(s)	20, 394, 434
Bsp143I	GATC	4 cut(s)	169, 232, 292, 466
Bsp19I	CCATGG	2 cut(s)	43, 456
BspACI	CCGC	4 cut(s)	36, 89, 240, 306
BspANI	GGCC	4 cut(s)	64, 272, 432, 445
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	5 cut(s)	234, 391, 432, 474, 475
BspPI	GGATC	4 cut(s)	177, 227, 240, 474
BspT107I	GGYRCC	1 cut(s)	389
BsrBI	CCGCTC	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	345
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	3 cut(s)	43, 456, 476
BssMI	GATC	4 cut(s)	169, 232, 292, 466
BssT1I	CCWWGG	2 cut(s)	43, 456
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	114, 283
BstC8I	GCNNGC	5 cut(s)	125, 274, 308, 333, 360
BstDEI	CTNAG	2 cut(s)	29, 92
BstDSI	CCRYGG	2 cut(s)	43, 456
BstF5I	GGATG	2 cut(s)	132, 151
BstKTI	GATC	4 cut(s)	172, 235, 295, 469
BstMBI	GATC	4 cut(s)	169, 232, 292, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	475, 476
BstSLI	GKGCMC	2 cut(s)	394, 434
BstV1I	GCAGC	2 cut(s)	107, 271
BstX2I	RGATCY	3 cut(s)	169, 232, 466
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	3 cut(s)	169, 232, 466
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	64, 272, 432, 445
BtgI	CCRYGG	2 cut(s)	43, 456
BtsCI	GGATG	2 cut(s)	132, 151
Cac8I	GCNNGC	5 cut(s)	125, 274, 308, 333, 360
Cfr10I	RCCGGY	1 cut(s)	180
Cfr13I	GGNCC	4 cut(s)	430, 431, 443, 473
Cfr9I	CCCGGG	1 cut(s)	476
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	99, 243
CviAII	CATG	2 cut(s)	44, 457
CviQI	GTAC	2 cut(s)	99, 243
DdeI	CTNAG	2 cut(s)	29, 92
DpnI	GATC	4 cut(s)	171, 234, 294, 468
DpnII	GATC	4 cut(s)	169, 232, 292, 466
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	114, 283
EarI	CTCTTC	2 cut(s)	114, 283
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	43, 456
Eco147I	AGGCCT	1 cut(s)	64
Eco24I	GRGCYC	2 cut(s)	20, 434
Eco47I	GGWCC	1 cut(s)	473
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	476
EcoICRI	GAGCTC	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	347
EcoT14I	CCWWGG	2 cut(s)	43, 456
EcoT38I	GRGCYC	2 cut(s)	20, 434
ErhI	CCWWGG	2 cut(s)	43, 456
FaeI	CATG	2 cut(s)	47, 460
FaiI	YATR	6 cut(s)	45, 117, 199, 323, 417, 458
FatI	CATG	2 cut(s)	43, 456
FauI	CCCGC	1 cut(s)	299
Fnu4HI	GCNGC	2 cut(s)	121, 260
FokI	GGATG	2 cut(s)	119, 158
FriOI	GRGCYC	2 cut(s)	20, 434
Fsp4HI	GCNGC	2 cut(s)	121, 260
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	2 cut(s)	121, 260
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	4 cut(s)	64, 272, 432, 445
HapII	CCGG	2 cut(s)	181, 477
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	47, 460
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HpaII	CCGG	2 cut(s)	181, 477
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	156, 174
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	2 cut(s)	144, 163
HpyAV	CCTTC	4 cut(s)	78, 84, 146, 212
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	3 cut(s)	123, 259, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	2 cut(s)	29, 92
Hsp92II	CATG	2 cut(s)	47, 460
KflI	GGGWCCC	1 cut(s)	473
Kzo9I	GATC	4 cut(s)	169, 232, 292, 466
Lsp1109I	GCAGC	2 cut(s)	107, 271
MaeI	CTAG	1 cut(s)	237
MalI	GATC	4 cut(s)	171, 234, 294, 468
MbiI	CCGCTC	1 cut(s)	91
MboI	GATC	4 cut(s)	169, 232, 292, 466
MboII	GAAGA	2 cut(s)	101, 300
MflI	RGATCY	3 cut(s)	169, 232, 466
MhlI	GDGCHC	3 cut(s)	20, 394, 434
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	1 cut(s)	347
MluNI	TGGCCA	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	3 cut(s)	54, 63, 75
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
MslI	CAYNNNNRTG	1 cut(s)	326
Msp20I	TGGCCA	1 cut(s)	272
MspI	CCGG	2 cut(s)	181, 477
MspR9I	CCNGG	2 cut(s)	477, 478
MwoI	GCNNNNNNNGC	1 cut(s)	70
NciI	CCSGG	2 cut(s)	477, 478
NcoI	CCATGG	2 cut(s)	43, 456
NdeII	GATC	4 cut(s)	169, 232, 292, 466
NlaIII	CATG	2 cut(s)	47, 460
NlaIV	GGNNCC	5 cut(s)	234, 391, 432, 474, 475
PceI	AGGCCT	1 cut(s)	64
Pfl23II	CGTACG	1 cut(s)	98
PflMI	CCANNNNNTGG	2 cut(s)	279, 440
PkrI	GCNGC	2 cut(s)	122, 261
PpuMI	RGGWCCY	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	473
PspFI	CCCAGC	1 cut(s)	440
PspLI	CGTACG	1 cut(s)	98
PspN4I	GGNNCC	5 cut(s)	234, 391, 432, 474, 475
PspOMI	GGGCCC	1 cut(s)	430
PspPI	GGNCC	4 cut(s)	430, 431, 443, 473
PspPPI	RGGWCCY	1 cut(s)	473
PsuI	RGATCY	3 cut(s)	169, 232, 466
RsaI	GTAC	2 cut(s)	100, 244
RsaNI	GTAC	2 cut(s)	99, 243
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	20
SatI	GCNGC	2 cut(s)	121, 260
Sau3AI	GATC	4 cut(s)	169, 232, 292, 466
Sau96I	GGNCC	4 cut(s)	430, 431, 443, 473
ScrFI	CCNGG	2 cut(s)	477, 478
SduI	GDGCHC	3 cut(s)	20, 394, 434
SetI	ASST	4 cut(s)	20, 30, 210, 453
SinI	GGWCC	1 cut(s)	473
SmaI	CCCGGG	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	347
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	4 cut(s)	36, 89, 240, 306
SspMI	CTAG	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	2 cut(s)	475, 476
StyI	CCWWGG	2 cut(s)	43, 456
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	139
TaqII	GACCGA	1 cut(s)	285
TasI	AATT	1 cut(s)	347
TseI	GCWGC	2 cut(s)	120, 259
TspDTI	ATGAA	2 cut(s)	121, 310
TspMI	CCCGGG	1 cut(s)	476
Van91I	CCANNNNNTGG	2 cut(s)	279, 440
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	1 cut(s)	347
XmaI	CCCGGG	1 cut(s)	476
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.