Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Reverse (-)

4587014 .. 4588198

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022584

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGAGAGAGCGAGAGCTCTATAAACCCTAGCGCTGTCACCGATGGGTATCCTCTTTGGAGGCATTCTTCGCCTTCTCTCCAGCGTCAGCTCAGGCGTACGAGTTCTCTTCACTATGGCTGCACGCCTTTCATCCTTCGACGGGACGATTTTCCGACGACGGCAAGGGATCTAATTAGCCGGTTGTCCTTTGTGATATGGCTTCAGGTTTCGGGCTTTCTGGTGGTGTGGGATCCTGGTGGTACTCTGGTTGGATTACAGCCGTTCCTAGCCGGCGAGTGGTGGAGAAGAGATCGGTCAACAAGCGGGCAGATCTGGTTCGTACTGGTGCAGGCACGACTGGTGGAATTCAGTCCAGACTGTTTCAGGCGGCGAAGTCGATATTGGGCTAGGCGGGCTTCTGCTCTCCTGCACGGTGGCGGCTTGGTCTTCCCTTGGTGGCTGATCTTGTTCTGGTGGCGAAGATGGTTGATGATCCCGTCGGGTAGTAGCTGGCGGTGGTGCTTGGGTTCTCTGTGTGGGGTGCCCAGAGTAATCTGGGTTATCCTTCTGGGCTGGTGTTGGGCTCACCTGCTGGGCCAGACCTCTCCATGGGTCTGGATCTGGGACCCGGGTGACTCATTGCCTGCTTCTATGTTAATTTGGACGAGGTTTCTGGGTGCGCCGCATTTGTTTTCAGGTGGATTGAGCCTTTCTAGATTCTATACAAAGGCTCGGTATAGTCACGCTATCAGGAATAATGACCAGTCGGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

29.28

Weight (kDa)

10.46

Isoelectric Point (pI)

71.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	579
Acc36I	ACCTGC	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	523
AciI	CCGC	6 cut(s)	306, 370, 394, 420, 496, 665
AclWI	GGATC	5 cut(s)	177, 227, 240, 469, 608
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	3 cut(s)	100, 244, 324
AfeI	AGCGCT	1 cut(s)	34
AfiI	CCNNNNNNNGG	4 cut(s)	142, 279, 591, 751
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	367, 399
AluBI	AGCT	3 cut(s)	18, 91, 492
AluI	AGCT	3 cut(s)	18, 91, 492
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	5 cut(s)	177, 227, 240, 469, 608
Ama87I	CYCGRG	1 cut(s)	610
Aor51HI	AGCGCT	1 cut(s)	34
AoxI	GGCC	1 cut(s)	577
ApeKI	GCWGC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	35, 664
AspS9I	GGNCC	2 cut(s)	577, 607
AsuC2I	CCSGG	2 cut(s)	611, 612
AsuHPI	GGTGA	3 cut(s)	31, 560, 626
AvaI	CYCGRG	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	607
BaeGI	GKGCMC	1 cut(s)	528
BaeI	ACNNNNGTAYC	2 cut(s)	234, 267
BamHI	GGATCC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	523
BanII	GRGCYC	2 cut(s)	20, 568
BbsI	GAAGAC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	2 cut(s)	38, 459
BceAI	ACGGC	2 cut(s)	177, 247
BciT130I	CCWGG	1 cut(s)	237
BciVI	GTATCC	1 cut(s)	60
BcnI	CCSGG	2 cut(s)	611, 612
BfaI	CTAG	4 cut(s)	30, 269, 390, 696
BfoI	RGCGCY	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	579
BfuI	GTATCC	1 cut(s)	60
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	4 cut(s)	121, 371, 421, 665
BlsI	GCNGC	4 cut(s)	122, 372, 422, 666
Bme1390I	CCNGG	3 cut(s)	237, 611, 612
Bme18I	GGWCC	1 cut(s)	607
BmeT110I	CYCGRG	1 cut(s)	610
BmgT120I	GGNCC	2 cut(s)	577, 607
BmiI	GGNNCC	4 cut(s)	234, 525, 608, 609
BmrFI	CCNGG	3 cut(s)	237, 611, 612
BpiI	GAAGAC	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	92
BpuMI	CCSGG	2 cut(s)	611, 612
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	434, 590, 610
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 279, 591, 751
Bse118I	RCCGGY	2 cut(s)	180, 272
Bse1I	ACTGG	3 cut(s)	330, 345, 745
Bse3DI	GCAATG	1 cut(s)	620
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	3 cut(s)	434, 590, 610
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	4 cut(s)	142, 279, 591, 751
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	1 cut(s)	106
BseNI	ACTGG	3 cut(s)	330, 345, 745
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	1 cut(s)	107
BseYI	CCCAGC	1 cut(s)	574
BsgI	GTGCAG	3 cut(s)	106, 350, 395
BshFI	GGCC	1 cut(s)	579
BshNI	GGYRCC	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	610
BsiSI	CCGG	3 cut(s)	181, 273, 611
BsiWI	CGTACG	1 cut(s)	98
BslFI	GGGAC	2 cut(s)	158, 620
BslI	CCNNNNNNNGG	4 cut(s)	142, 279, 591, 751
BsmFI	GGGAC	2 cut(s)	158, 620
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	579
BsoBI	CYCGRG	1 cut(s)	610
Bsp1286I	GDGCHC	3 cut(s)	20, 528, 568
Bsp143I	GATC	7 cut(s)	169, 232, 292, 312, 444, 474, 600
Bsp19I	CCATGG	1 cut(s)	590
BspACI	CCGC	6 cut(s)	306, 370, 394, 420, 496, 665
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	4 cut(s)	234, 525, 608, 609
BspMI	ACCTGC	1 cut(s)	579
BspPI	GGATC	5 cut(s)	177, 227, 240, 469, 608
BspT107I	GGYRCC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	620
BsrFI	RCCGGY	2 cut(s)	180, 272
BsrI	ACTGG	3 cut(s)	330, 345, 745
BssAI	RCCGGY	2 cut(s)	180, 272
BssECI	CCNNGG	3 cut(s)	434, 590, 610
BssMI	GATC	7 cut(s)	169, 232, 292, 312, 444, 474, 600
BssT1I	CCWWGG	2 cut(s)	434, 590
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	362, 416
Bst6I	CTCTTC	2 cut(s)	114, 283
BstC8I	GCNNGC	7 cut(s)	125, 274, 308, 333, 396, 494, 627
BstDEI	CTNAG	1 cut(s)	92
BstDSI	CCRYGG	1 cut(s)	590
BstF5I	GGATG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	35, 664
BstKTI	GATC	7 cut(s)	172, 235, 295, 315, 447, 477, 603
BstMBI	GATC	7 cut(s)	169, 232, 292, 312, 444, 474, 600
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 395
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	3 cut(s)	235, 609, 610
BstSLI	GKGCMC	1 cut(s)	528
BstV1I	GCAGC	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	421
BstX2I	RGATCY	4 cut(s)	169, 232, 312, 600
BstXI	CCANNNNNNTGG	1 cut(s)	597
BstYI	RGATCY	4 cut(s)	169, 232, 312, 600
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	579
BtgI	CCRYGG	1 cut(s)	590
BtsCI	GGATG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	579
Cac8I	GCNNGC	7 cut(s)	125, 274, 308, 333, 396, 494, 627
CfoI	GCGC	2 cut(s)	35, 664
Cfr10I	RCCGGY	2 cut(s)	180, 272
Cfr13I	GGNCC	2 cut(s)	577, 607
Cfr9I	CCCGGG	1 cut(s)	610
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	99, 243, 323
CviAII	CATG	1 cut(s)	591
CviQI	GTAC	3 cut(s)	99, 243, 323
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	7 cut(s)	171, 234, 294, 314, 446, 476, 602
DpnII	GATC	7 cut(s)	169, 232, 292, 312, 444, 474, 600
Eam1104I	CTCTTC	2 cut(s)	114, 283
EarI	CTCTTC	2 cut(s)	114, 283
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	434, 590
Eco24I	GRGCYC	2 cut(s)	20, 568
Eco47I	GGWCC	1 cut(s)	607
Eco47III	AGCGCT	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	610
EcoICRI	GAGCTC	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRI	GAATTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	2 cut(s)	434, 590
EcoT38I	GRGCYC	2 cut(s)	20, 568
ErhI	CCWWGG	2 cut(s)	434, 590
FaeI	CATG	1 cut(s)	594
FaiI	YATR	7 cut(s)	23, 117, 199, 592, 635, 705, 720
FaqI	GGGAC	2 cut(s)	158, 620
FatI	CATG	1 cut(s)	590
FauI	CCCGC	2 cut(s)	299, 387
Fnu4HI	GCNGC	4 cut(s)	121, 371, 421, 665
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	2 cut(s)	20, 568
Fsp4HI	GCNGC	4 cut(s)	121, 371, 421, 665
FspBI	CTAG	4 cut(s)	30, 269, 390, 696
GlaI	GCGC	2 cut(s)	34, 663
GluI	GCNGC	4 cut(s)	121, 371, 421, 665
GsaI	CCCAGC	1 cut(s)	578
GsuI	CTGGAG	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	579
HapII	CCGG	3 cut(s)	181, 273, 611
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	2 cut(s)	35, 664
Hin1II	CATG	1 cut(s)	594
Hin6I	GCGC	2 cut(s)	33, 662
HinP1I	GCGC	2 cut(s)	33, 662
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	2 cut(s)	617, 699
HpaII	CCGG	3 cut(s)	181, 273, 611
HphI	GGTGA	3 cut(s)	31, 560, 626
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	156, 751
Hpy188III	TCNNGA	4 cut(s)	356, 598, 696, 733
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	4 cut(s)	144, 160, 163, 484
HpyAV	CCTTC	3 cut(s)	84, 146, 557
HpyCH4III	ACNGT	2 cut(s)	362, 416
HpyCH4V	TGCA	3 cut(s)	123, 331, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 395
HpyF3I	CTNAG	1 cut(s)	92
Hsp92II	CATG	1 cut(s)	594
HspAI	GCGC	2 cut(s)	33, 662
KflI	GGGWCCC	1 cut(s)	607
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	7 cut(s)	169, 232, 292, 312, 444, 474, 600
Lsp1109I	GCAGC	1 cut(s)	107
MaeI	CTAG	4 cut(s)	30, 269, 390, 696
MaeIII	GTNAC	3 cut(s)	37, 614, 722
MalI	GATC	7 cut(s)	171, 234, 294, 314, 446, 476, 602
MboI	GATC	7 cut(s)	169, 232, 292, 312, 444, 474, 600
MboII	GAAGA	5 cut(s)	60, 101, 300, 421, 474
MflI	RGATCY	4 cut(s)	169, 232, 312, 600
MhlI	GDGCHC	3 cut(s)	20, 528, 568
MluCI	AATT	3 cut(s)	174, 347, 639
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	3 cut(s)	179, 232, 729
MnlI	CCTC	5 cut(s)	54, 63, 595, 642, 745
MroNI	GCCGGC	1 cut(s)	272
MseI	TTAA	1 cut(s)	638
MspI	CCGG	3 cut(s)	181, 273, 611
MspR9I	CCNGG	3 cut(s)	237, 611, 612
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	70, 395
NaeI	GCCGGC	1 cut(s)	274
NciI	CCSGG	2 cut(s)	611, 612
NcoI	CCATGG	1 cut(s)	590
NdeII	GATC	7 cut(s)	169, 232, 292, 312, 444, 474, 600
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	1 cut(s)	594
NlaIV	GGNNCC	4 cut(s)	234, 525, 608, 609
NmuCI	GTSAC	3 cut(s)	37, 614, 722
PaqCI	CACCTGC	1 cut(s)	579
PctI	GAATGC	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	699
Pfl23II	CGTACG	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	122, 372, 422, 666
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
PpuMI	RGGWCCY	1 cut(s)	607
Psp124BI	GAGCTC	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	235
PspLI	CGTACG	1 cut(s)	98
PspN4I	GGNNCC	4 cut(s)	234, 525, 608, 609
PspPI	GGNCC	2 cut(s)	577, 607
PspPPI	RGGWCCY	1 cut(s)	607
PsuI	RGATCY	4 cut(s)	169, 232, 312, 600
RsaI	GTAC	3 cut(s)	100, 244, 324
RsaNI	GTAC	3 cut(s)	99, 243, 323
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	638
SatI	GCNGC	4 cut(s)	121, 371, 421, 665
Sau3AI	GATC	7 cut(s)	169, 232, 292, 312, 444, 474, 600
Sau96I	GGNCC	2 cut(s)	577, 607
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	3 cut(s)	237, 611, 612
SduI	GDGCHC	3 cut(s)	20, 528, 568
SetI	ASST	8 cut(s)	20, 93, 210, 494, 573, 587, 653, 682
SinI	GGWCC	1 cut(s)	607
SmaI	CCCGGG	1 cut(s)	612
Sse9I	AATT	3 cut(s)	174, 347, 639
SsiI	CCGC	6 cut(s)	306, 370, 394, 420, 496, 665
SspMI	CTAG	4 cut(s)	30, 269, 390, 696
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	235, 609, 610
StyI	CCWWGG	2 cut(s)	434, 590
TaaI	ACNGT	2 cut(s)	362, 416
TaqI	TCGA	2 cut(s)	139, 379
TaqII	GACCGA	1 cut(s)	285
TasI	AATT	3 cut(s)	174, 347, 639
TauI	GCSGC	3 cut(s)	373, 423, 667
TfiI	GAWTC	1 cut(s)	699
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TseFI	GTSAC	3 cut(s)	37, 614, 722
TseI	GCWGC	1 cut(s)	120
Tsp45I	GTSAC	3 cut(s)	37, 614, 722
TspDTI	ATGAA	1 cut(s)	121
TspMI	CCCGGG	1 cut(s)	610
VpaK11BI	GGWCC	1 cut(s)	607
XapI	RAATTY	1 cut(s)	347
XbaI	TCTAGA	1 cut(s)	695
XmaI	CCCGGG	1 cut(s)	610
XspI	CTAG	4 cut(s)	30, 269, 390, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.