RLG00000007694

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004887
Physical Location & Seq
Forward (+)
19940325 .. 19941134
810 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007694

Sequence Viewer

Length: 402 bp
ATGGGAGAGAGCGAGAGTTTTTCTCCCTTGCAAAACCCTAGCGTCGCCGCTGATAGGTGGCTTCTTTGGAAGCTTCTCGCGTCTCCTCTCCAGCGTTCGCTCAAGCGTATGAGCTCTCCATGCCATGGCTACACGTCGCTCTTCATTCGACGGGATTTTCGTCCGACAACGGTGAGTGATCTAATAGGCTGGGTTTTCATTGCGCTATTGCTTCAGGTCTGGGGACTTCTAAGACTATGGGATCCGAGTGGTACTCTGTTCGGGGTATTATTGATCCTAGCCGGCGAGTTGTGGAAGAGAGATTGGGTGCAAGCACGATGTGGATTGCTTCTGCTGAGATTCACTTGGATCTGGTTCGGGCGGCGTCATCAACATCGGGCTAGGTTAAATCCTGTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.5

Weight (kDa)

11.27

Isoelectric Point (pI)

67.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AccII CGCG 1 cut(s) 80
AciI CCGC 2 cut(s) 48, 361
AclWI GGATC 4 cut(s) 236, 249, 268, 356
AcuI CTGAAG 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 364
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 54, 125
AflIII ACRYGT 1 cut(s) 132
AjiI CACGTC 1 cut(s) 135
AluBI AGCT 2 cut(s) 73, 114
AluI AGCT 2 cut(s) 73, 114
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 4 cut(s) 236, 249, 268, 356
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
AspLEI GCGC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 184
BamHI GGATCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 4 cut(s) 39, 278, 381, 400
BisI GCNGC 2 cut(s) 48, 362
BlsI GCNGC 2 cut(s) 49, 363
BmgBI CACGTC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 243
BplI GAGNNNNNCTC 4 cut(s) 7, 39, 238, 270
BpmI CTGGAG 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 125
Bse118I RCCGGY 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 54, 125
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 75
BseYI CCCAGC 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 54, 125
BsmAI GTCTC 1 cut(s) 87
BsmBI CGTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 4 cut(s) 178, 241, 273, 348
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 2 cut(s) 48, 361
BspCNI CTCAG 1 cut(s) 327
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 4 cut(s) 236, 249, 268, 356
BspQI GCTCTTC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 4 cut(s) 178, 241, 273, 348
BssNI GRCGYC 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 2 cut(s) 146, 290
BstACI GRCGYC 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 283, 312
BstDEI CTNAG 2 cut(s) 230, 335
BstDSI CCRYGG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 4 cut(s) 181, 244, 276, 351
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 4 cut(s) 178, 241, 273, 348
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstUI CGCG 1 cut(s) 80
BstX2I RGATCY 2 cut(s) 241, 348
BstYI RGATCY 2 cut(s) 241, 348
BtgI CCRYGG 1 cut(s) 124
BtrI CACGTC 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 283, 312
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 281
CseI GACGC 3 cut(s) 31, 69, 353
Csp6I GTAC 1 cut(s) 252
CviAII CATG 2 cut(s) 120, 125
CviJI RGCY 7 cut(s) 61, 73, 114, 129, 189, 281, 380
CviKI_1 RGCY 7 cut(s) 61, 73, 114, 129, 189, 281, 380
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 2 cut(s) 230, 335
DpnI GATC 4 cut(s) 180, 243, 275, 350
DpnII GATC 4 cut(s) 178, 241, 273, 348
DraIII CACNNNGTG 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 146, 290
EarI CTCTTC 2 cut(s) 146, 290
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 197
EcoICRI GAGCTC 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 2 cut(s) 123, 128
FaiI YATR 4 cut(s) 110, 121, 126, 238
FaqI GGGAC 1 cut(s) 237
FatI CATG 2 cut(s) 119, 124
Fnu4HI GCNGC 2 cut(s) 48, 362
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 48, 362
FspBI CTAG 4 cut(s) 39, 278, 381, 400
GlaI GCGC 1 cut(s) 204
GluI GCNGC 2 cut(s) 48, 362
GsaI CCCAGC 1 cut(s) 193
GsuI CTGGAG 1 cut(s) 74
HapII CCGG 1 cut(s) 282
HgaI GACGC 3 cut(s) 31, 69, 353
HhaI GCGC 1 cut(s) 205
Hin1I GRCGYC 1 cut(s) 364
Hin1II CATG 2 cut(s) 123, 128
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 339
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 165, 246
Hpy99I CGWCG 3 cut(s) 47, 139, 153
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 31, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 2 cut(s) 230, 335
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 364
Hsp92II CATG 2 cut(s) 123, 128
HspAI GCGC 1 cut(s) 203
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Kzo9I GATC 4 cut(s) 178, 241, 273, 348
LguI GCTCTTC 1 cut(s) 146
LpnPI CCDG 6 cut(s) 104, 175, 200, 205, 295, 337
MaeI CTAG 4 cut(s) 39, 278, 381, 400
MaeII ACGT 1 cut(s) 134
MalI GATC 4 cut(s) 180, 243, 275, 350
MboI GATC 4 cut(s) 178, 241, 273, 348
MboII GAAGA 2 cut(s) 133, 307
MflI RGATCY 2 cut(s) 241, 348
MhlI GDGCHC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 1 cut(s) 96
MroNI GCCGGC 1 cut(s) 281
MseI TTAA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 120
NaeI GCCGGC 1 cut(s) 283
NcoI CCATGG 1 cut(s) 124
NdeII GATC 4 cut(s) 178, 241, 273, 348
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 2 cut(s) 123, 128
NlaIV GGNNCC 1 cut(s) 243
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PdiI GCCGGC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 339
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 2 cut(s) 49, 363
Psp124BI GAGCTC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 243
PsuI RGATCY 2 cut(s) 241, 348
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 2 cut(s) 48, 362
Sau3AI GATC 4 cut(s) 178, 241, 273, 348
SduI GDGCHC 1 cut(s) 116
SetI ASST 6 cut(s) 59, 75, 116, 137, 219, 386
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SsiI CCGC 2 cut(s) 48, 361
SspMI CTAG 4 cut(s) 39, 278, 381, 400
SstI GAGCTC 1 cut(s) 116
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 137
TaqI TCGA 1 cut(s) 148
TauI GCSGC 2 cut(s) 50, 364
TfiI GAWTC 1 cut(s) 339
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 133, 187
Van91I CCANNNNNTGG 1 cut(s) 125
XspI CTAG 4 cut(s) 39, 278, 381, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.