Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Forward (+)

2514724 .. 2516039

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010541

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCTTAAGCTTCAACCTCCGACAGCATCCTTCCTCACCATCTCGTTCGGCTCCGGCAACACAGGATCGTCTGATGCAACAACTCCGTCGTCGATTCCATTCTCCATTACCTTTCTCAGCCGGAGCTGGCCCAAACAGAGACTAGCTGGAGTAGTTAGGCCTCAGATCTTCGAATCCAAACGGCAAACCCATCGCCGCGTCGTCCAACTCCGGCAACTTGATATTTTGATGCGAGGTGAGGAGGCTGAAGACGAAGCTTCAAACGACGAGATCGAGAGCACAAAGAGCTCTCAACCACCTAAGATTCATCGGCACCGTCTTCCAGCGGCTTCGACCTGTAAGTTGAATCTTCGTCTCCGCCTTCGAAGGCAACTCCAACCTCTTCTGGTGGCTTCGACCTCGTTCCTACCGCTGAGATCTGAGATTGCATCTGAGCTCCGATTTGAATCCATCAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.26

Weight (kDa)

10.81

Isoelectric Point (pI)

76.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	312
AccII	CGCG	1 cut(s)	198
AciI	CCGC	4 cut(s)	196, 326, 358, 410
AclWI	GGATC	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	267
AflII	CTTAAG	1 cut(s)	5
AgsI	TTSAA	4 cut(s)	14, 261, 346, 446
AluBI	AGCT	6 cut(s)	10, 126, 146, 257, 288, 436
AluI	AGCT	6 cut(s)	10, 126, 146, 257, 288, 436
Alw21I	GWGCWC	3 cut(s)	281, 290, 438
Alw26I	GTCTC	2 cut(s)	133, 359
AlwI	GGATC	1 cut(s)	73
AoxI	GGCC	2 cut(s)	128, 158
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	28, 248
AsuII	TTCGAA	2 cut(s)	171, 364
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	2 cut(s)	290, 438
BbsI	GAAGAC	2 cut(s)	255, 311
Bbv12I	GWGCWC	3 cut(s)	281, 290, 438
BccI	CCATC	3 cut(s)	47, 198, 458
BceAI	ACGGC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BcoDI	GTCTC	2 cut(s)	133, 359
BfaI	CTAG	1 cut(s)	143
BfrI	CTTAAG	1 cut(s)	5
BglII	AGATCT	2 cut(s)	165, 416
BisI	GCNGC	2 cut(s)	196, 327
BlsI	GCNGC	2 cut(s)	197, 328
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	52, 314
BmsI	GCATC	4 cut(s)	35, 64, 219, 437
BpiI	GAAGAC	2 cut(s)	255, 311
BpmI	CTGGAG	1 cut(s)	168
Bpu14I	TTCGAA	2 cut(s)	171, 364
BsaBI	GATNNNNATC	1 cut(s)	445
Bse8I	GATNNNNATC	1 cut(s)	445
BseGI	GGATG	1 cut(s)	26
BseJI	GATNNNNATC	1 cut(s)	445
BseMII	CTCAG	5 cut(s)	130, 176, 404, 411, 423
BseRI	GAGGAG	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	130, 160
BshNI	GGYRCC	1 cut(s)	312
BsiHKAI	GWGCWC	3 cut(s)	281, 290, 438
BsiSI	CCGG	3 cut(s)	54, 121, 211
BsmAI	GTCTC	2 cut(s)	133, 359
BsmBI	CGTCTC	1 cut(s)	359
BsnI	GGCC	2 cut(s)	130, 160
Bsp119I	TTCGAA	2 cut(s)	171, 364
Bsp1286I	GDGCHC	3 cut(s)	281, 290, 438
Bsp143I	GATC	4 cut(s)	65, 165, 270, 416
BspACI	CCGC	4 cut(s)	196, 326, 358, 410
BspANI	GGCC	2 cut(s)	130, 160
BspCNI	CTCAG	5 cut(s)	129, 175, 405, 412, 424
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	52, 314
BspPI	GGATC	1 cut(s)	73
BspT104I	TTCGAA	2 cut(s)	171, 364
BspT107I	GGYRCC	1 cut(s)	312
BspTI	CTTAAG	1 cut(s)	5
BssMI	GATC	4 cut(s)	65, 165, 270, 416
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	387
BstAFI	CTTAAG	1 cut(s)	5
BstBI	TTCGAA	2 cut(s)	171, 364
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	6 cut(s)	116, 162, 300, 413, 420, 432
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	4 cut(s)	68, 168, 273, 419
BstMAI	GTCTC	2 cut(s)	133, 359
BstMBI	GATC	4 cut(s)	65, 165, 270, 416
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstUI	CGCG	1 cut(s)	198
BstV2I	GAAGAC	2 cut(s)	255, 311
BstX2I	RGATCY	2 cut(s)	165, 416
BstYI	RGATCY	2 cut(s)	165, 416
BsuRI	GGCC	2 cut(s)	130, 160
BtgZI	GCGATG	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	1 cut(s)	187
DdeI	CTNAG	6 cut(s)	116, 162, 300, 413, 420, 432
DpnI	GATC	4 cut(s)	67, 167, 272, 418
DpnII	GATC	4 cut(s)	65, 165, 270, 416
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
EciI	GGCGGA	1 cut(s)	347
Ecl136II	GAGCTC	2 cut(s)	288, 436
Eco147I	AGGCCT	1 cut(s)	160
Eco24I	GRGCYC	2 cut(s)	290, 438
Eco53kI	GAGCTC	2 cut(s)	288, 436
Eco57I	CTGAAG	1 cut(s)	267
EcoICRI	GAGCTC	2 cut(s)	288, 436
EcoT38I	GRGCYC	2 cut(s)	290, 438
Esp3I	CGTCTC	1 cut(s)	359
Fnu4HI	GCNGC	2 cut(s)	196, 327
FokI	GGATG	1 cut(s)	13
FriOI	GRGCYC	2 cut(s)	290, 438
Fsp4HI	GCNGC	2 cut(s)	196, 327
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	2 cut(s)	196, 327
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	130, 160
HapII	CCGG	3 cut(s)	54, 121, 211
HgaI	GACGC	1 cut(s)	187
HindIII	AAGCTT	2 cut(s)	8, 255
HinfI	GANTC	5 cut(s)	94, 173, 304, 346, 446
HpaII	CCGG	3 cut(s)	54, 121, 211
HphI	GGTGA	2 cut(s)	28, 248
Hpy188I	TCNGA	7 cut(s)	21, 73, 165, 421, 433, 440, 461
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	4 cut(s)	91, 94, 203, 269
HpyAV	CCTTC	3 cut(s)	40, 360, 371
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	2 cut(s)	77, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	6 cut(s)	116, 162, 300, 413, 420, 432
Kzo9I	GATC	4 cut(s)	65, 165, 270, 416
LmnI	GCTCC	3 cut(s)	56, 123, 441
LpnPI	CCDG	9 cut(s)	48, 67, 112, 132, 134, 224, 336, 349, 371
LweI	GCATC	4 cut(s)	35, 64, 219, 437
MaeI	CTAG	1 cut(s)	143
MalI	GATC	4 cut(s)	67, 167, 272, 418
MboI	GATC	4 cut(s)	65, 165, 270, 416
MboII	GAAGA	5 cut(s)	160, 260, 311, 341, 374
MflI	RGATCY	2 cut(s)	165, 416
MhlI	GDGCHC	3 cut(s)	281, 290, 438
MmeI	TCCRAC	3 cut(s)	44, 229, 400
MnlI	CCTC	8 cut(s)	27, 44, 171, 227, 232, 235, 390, 409
MseI	TTAA	1 cut(s)	6
MspA1I	CMGCKG	2 cut(s)	326, 412
MspCI	CTTAAG	1 cut(s)	5
MspI	CCGG	3 cut(s)	54, 121, 211
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	285
NdeII	GATC	4 cut(s)	65, 165, 270, 416
NlaIV	GGNNCC	2 cut(s)	52, 314
NspV	TTCGAA	2 cut(s)	171, 364
PceI	AGGCCT	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	5 cut(s)	94, 173, 304, 346, 446
PkrI	GCNGC	2 cut(s)	197, 328
Psp124BI	GAGCTC	2 cut(s)	290, 438
PspN4I	GGNNCC	2 cut(s)	52, 314
PspPI	GGNCC	1 cut(s)	129
PsuI	RGATCY	2 cut(s)	165, 416
SacI	GAGCTC	2 cut(s)	290, 438
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	196, 327
Sau3AI	GATC	4 cut(s)	65, 165, 270, 416
Sau96I	GGNCC	1 cut(s)	129
SduI	GDGCHC	3 cut(s)	281, 290, 438
SfaNI	GCATC	4 cut(s)	35, 64, 219, 437
SfuI	TTCGAA	2 cut(s)	171, 364
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	4 cut(s)	196, 326, 358, 410
SspMI	CTAG	1 cut(s)	143
SstI	GAGCTC	2 cut(s)	290, 438
StuI	AGGCCT	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	6 cut(s)	92, 171, 273, 332, 364, 395
TauI	GCSGC	2 cut(s)	198, 329
TfiI	GAWTC	5 cut(s)	94, 173, 304, 346, 446
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	75
Vha464I	CTTAAG	1 cut(s)	5
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.