Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Reverse (-)

27884246 .. 27885594

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013218

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGGAGATCAAGAGGCCTCCGACAACATCCTTCCTCACCATCTCGTTCGGCTCCGGCAACACAGGATCGTCTGATGCGACAACTCCGTCGTCGATTCCGTTCTCCATTACCTTTCTCAGCCGGAGCTGGCCCAAACAGAGACTAGCTGGAGTAGTTAGGCCTCAGATCTTTGAATCCAAAAGGCAAACCCATCGCCGCGTCGTCCAACTCCGGCAACTTGATATTTTGATGCGAGGTGAGGAGGCTGAAGACGAAGCTTCAAACGAAGAGATCGAGAGTACAAAGAGCTCTCAACCACCTAAGATTCATCGGCACCGTCTTCCAGCGGCTTCGACCTGTAAGTTGAATCTTCGTCTCCGCCTTCGAAGGCAACTCCAACCTCTTCTGGCGGCTTTGACCTCGTTCCTACTGCCGAGATCTGAGATTGCATCTGAGCTCCGATTTGAATCCGTCAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.47

Weight (kDa)

10.55

Isoelectric Point (pI)

80.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	315
AccII	CGCG	1 cut(s)	201
AciI	CCGC	4 cut(s)	199, 329, 361, 392
AclWI	GGATC	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	283
AgsI	TTSAA	4 cut(s)	176, 264, 349, 449
AluBI	AGCT	6 cut(s)	129, 149, 260, 291, 439, 460
AluI	AGCT	6 cut(s)	129, 149, 260, 291, 439, 460
Alw21I	GWGCWC	2 cut(s)	293, 441
Alw26I	GTCTC	2 cut(s)	136, 362
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	3 cut(s)	17, 131, 161
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	31, 251
AsuII	TTCGAA	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	2 cut(s)	293, 441
BbsI	GAAGAC	2 cut(s)	258, 314
Bbv12I	GWGCWC	2 cut(s)	293, 441
BccI	CCATC	2 cut(s)	50, 201
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BcoDI	GTCTC	2 cut(s)	136, 362
BfaI	CTAG	1 cut(s)	146
BglII	AGATCT	2 cut(s)	168, 419
BisI	GCNGC	3 cut(s)	199, 330, 393
BlsI	GCNGC	3 cut(s)	200, 331, 394
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	55, 317
BmsI	GCATC	3 cut(s)	67, 222, 440
BpiI	GAAGAC	2 cut(s)	258, 314
BpmI	CTGGAG	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	448
Bse8I	GATNNNNATC	1 cut(s)	448
BseGI	GGATG	1 cut(s)	29
BseJI	GATNNNNATC	1 cut(s)	448
BseMII	CTCAG	4 cut(s)	133, 179, 414, 426
BseRI	GAGGAG	2 cut(s)	20, 257
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	3 cut(s)	19, 133, 163
BshNI	GGYRCC	1 cut(s)	315
BsiHKAI	GWGCWC	2 cut(s)	293, 441
BsiSI	CCGG	3 cut(s)	57, 124, 214
BsmAI	GTCTC	2 cut(s)	136, 362
BsmBI	CGTCTC	1 cut(s)	362
BsnI	GGCC	3 cut(s)	19, 133, 163
Bsp119I	TTCGAA	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	293, 441
Bsp143I	GATC	5 cut(s)	9, 68, 168, 273, 419
BspACI	CCGC	4 cut(s)	199, 329, 361, 392
BspANI	GGCC	3 cut(s)	19, 133, 163
BspCNI	CTCAG	4 cut(s)	132, 178, 415, 427
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	55, 317
BspPI	GGATC	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	315
BssMI	GATC	5 cut(s)	9, 68, 168, 273, 419
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	2 cut(s)	264, 390
BstBI	TTCGAA	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	5 cut(s)	119, 165, 303, 423, 435
BstF5I	GGATG	1 cut(s)	29
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	5 cut(s)	12, 71, 171, 276, 422
BstMAI	GTCTC	2 cut(s)	136, 362
BstMBI	GATC	5 cut(s)	9, 68, 168, 273, 419
BstUI	CGCG	1 cut(s)	201
BstV2I	GAAGAC	2 cut(s)	258, 314
BstX2I	RGATCY	2 cut(s)	168, 419
BstYI	RGATCY	2 cut(s)	168, 419
BsuRI	GGCC	3 cut(s)	19, 133, 163
BtgZI	GCGATG	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	282
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	5 cut(s)	119, 165, 303, 423, 435
DpnI	GATC	5 cut(s)	11, 70, 170, 275, 421
DpnII	GATC	5 cut(s)	9, 68, 168, 273, 419
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
Eam1104I	CTCTTC	2 cut(s)	264, 390
EarI	CTCTTC	2 cut(s)	264, 390
EciI	GGCGGA	1 cut(s)	350
Ecl136II	GAGCTC	2 cut(s)	291, 439
Eco147I	AGGCCT	2 cut(s)	19, 163
Eco24I	GRGCYC	2 cut(s)	293, 441
Eco53kI	GAGCTC	2 cut(s)	291, 439
Eco57I	CTGAAG	1 cut(s)	270
EcoICRI	GAGCTC	2 cut(s)	291, 439
EcoT38I	GRGCYC	2 cut(s)	293, 441
Esp3I	CGTCTC	1 cut(s)	362
Fnu4HI	GCNGC	3 cut(s)	199, 330, 393
FokI	GGATG	1 cut(s)	16
FriOI	GRGCYC	2 cut(s)	293, 441
Fsp4HI	GCNGC	3 cut(s)	199, 330, 393
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	3 cut(s)	199, 330, 393
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	3 cut(s)	19, 133, 163
HapII	CCGG	3 cut(s)	57, 124, 214
HgaI	GACGC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	5 cut(s)	97, 176, 307, 349, 449
HpaII	CCGG	3 cut(s)	57, 124, 214
HphI	GGTGA	2 cut(s)	31, 251
Hpy188I	TCNGA	7 cut(s)	24, 76, 168, 424, 436, 443, 464
Hpy188III	TCNNGA	2 cut(s)	13, 277
Hpy99I	CGWCG	3 cut(s)	94, 97, 206
HpyAV	CCTTC	3 cut(s)	43, 363, 374
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	1 cut(s)	431
HpyF3I	CTNAG	5 cut(s)	119, 165, 303, 423, 435
Kzo9I	GATC	5 cut(s)	9, 68, 168, 273, 419
LmnI	GCTCC	3 cut(s)	59, 126, 444
LpnPI	CCDG	9 cut(s)	51, 70, 115, 135, 137, 227, 339, 352, 374
LweI	GCATC	3 cut(s)	67, 222, 440
MaeI	CTAG	1 cut(s)	146
MalI	GATC	5 cut(s)	11, 70, 170, 275, 421
MboI	GATC	5 cut(s)	9, 68, 168, 273, 419
MboII	GAAGA	5 cut(s)	263, 281, 314, 344, 377
MflI	RGATCY	2 cut(s)	168, 419
MhlI	GDGCHC	2 cut(s)	293, 441
MmeI	TCCRAC	3 cut(s)	47, 232, 403
MnlI	CCTC	9 cut(s)	9, 30, 47, 174, 230, 235, 238, 393, 412
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	3 cut(s)	57, 124, 214
MvnI	CGCG	1 cut(s)	201
NdeII	GATC	5 cut(s)	9, 68, 168, 273, 419
NlaIV	GGNNCC	2 cut(s)	55, 317
NmeAIII	GCCGAG	1 cut(s)	441
NspV	TTCGAA	1 cut(s)	367
PceI	AGGCCT	2 cut(s)	19, 163
PcsI	WCGNNNNNNNCGW	3 cut(s)	77, 98, 273
PfeI	GAWTC	5 cut(s)	97, 176, 307, 349, 449
PkrI	GCNGC	3 cut(s)	200, 331, 394
Psp124BI	GAGCTC	2 cut(s)	293, 441
PspN4I	GGNNCC	2 cut(s)	55, 317
PspPI	GGNCC	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	168, 419
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SacI	GAGCTC	2 cut(s)	293, 441
SatI	GCNGC	3 cut(s)	199, 330, 393
Sau3AI	GATC	5 cut(s)	9, 68, 168, 273, 419
Sau96I	GGNCC	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	293, 441
SfaNI	GCATC	3 cut(s)	67, 222, 440
SfuI	TTCGAA	1 cut(s)	367
SseBI	AGGCCT	2 cut(s)	19, 163
SsiI	CCGC	4 cut(s)	199, 329, 361, 392
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	2 cut(s)	293, 441
StuI	AGGCCT	2 cut(s)	19, 163
TaaI	ACNGT	1 cut(s)	320
TaqI	TCGA	4 cut(s)	95, 276, 335, 367
TatI	WGTACW	1 cut(s)	281
TauI	GCSGC	3 cut(s)	201, 332, 395
TfiI	GAWTC	5 cut(s)	97, 176, 307, 349, 449
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	3 cut(s)	78, 90, 442
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.