Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Forward (+)

489430 .. 489878

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005636

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGAGAGAGCGAGAGCTCTCTAAACCCTAGCGCCGTCACCGATGGGTATCCTCTTTGGAGGCATTCTTCGCCTTCTCTCCAGTGTCCGCTTAGGCGTTTGGGGCTTTCTGGTGGTGTGGGATCCTGGCGATACTCTGGTTGGATTACAGCCGTTCCTAGCCGGCGAATGGGGGAGAAGAGATCGGTCAACAAGTGGGCAGATCTGGTTCGTACTGGTGCAGGCACGACGTACTGGTGGAATTCAGTCCGGTCTGTTTCAGGCGGCGAAGTCGATATTGGGCTAGGCGGTCTTCTGCTCTCCTGCACGGTGGCGGCTTGGTCTTCCCTTGGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

11.94

Weight (kDa)

9.58

Isoelectric Point (pI)

67.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	89, 264, 288, 314
AclWI	GGATC	2 cut(s)	117, 130
AcsI	RAATTY	1 cut(s)	241
AfaI	GTAC	2 cut(s)	214, 233
AfiI	CCNNNNNNNGG	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	2 cut(s)	117, 130
ApoI	RAATTY	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	31
BaeI	ACNNNNGTAYC	2 cut(s)	124, 157
BamHI	GGATCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	2 cut(s)	284, 315
Bbv12I	GWGCWC	1 cut(s)	20
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	2 cut(s)	20, 137
BciT130I	CCWGG	1 cut(s)	127
BciVI	GTATCC	1 cut(s)	60
BfaI	CTAG	3 cut(s)	30, 159, 284
BfoI	RGCGCY	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	60
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	2 cut(s)	265, 315
BlsI	GCNGC	2 cut(s)	266, 316
Bme1390I	CCNGG	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	127
BpiI	GAAGAC	2 cut(s)	284, 315
BpmI	CTGGAG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	3 cut(s)	82, 220, 239
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseNI	ACTGG	3 cut(s)	82, 220, 239
BsgI	GTGCAG	2 cut(s)	240, 289
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	163, 250
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	122, 182, 202
BspACI	CCGC	4 cut(s)	89, 264, 288, 314
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	117, 130
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	82, 220, 239
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	3 cut(s)	122, 182, 202
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	164, 223
BstDEI	CTNAG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	3 cut(s)	125, 185, 205
BstMBI	GATC	3 cut(s)	122, 182, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 103
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstV2I	GAAGAC	2 cut(s)	284, 315
BstX2I	RGATCY	2 cut(s)	122, 202
BstYI	RGATCY	2 cut(s)	122, 202
BsuI	GTATCC	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	164, 223
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	213, 232
CviJI	RGCY	7 cut(s)	18, 106, 152, 162, 283, 317, 336
CviKI_1	RGCY	7 cut(s)	18, 106, 152, 162, 283, 317, 336
CviQI	GTAC	2 cut(s)	213, 232
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	3 cut(s)	124, 184, 204
DpnII	GATC	3 cut(s)	122, 182, 202
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	265, 315
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	265, 315
FspBI	CTAG	3 cut(s)	30, 159, 284
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	265, 315
GsuI	CTGGAG	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	36
HapII	CCGG	2 cut(s)	163, 250
HhaI	GCGC	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HpaII	CCGG	2 cut(s)	163, 250
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	2 cut(s)	221, 306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 103
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	230
HspAI	GCGC	1 cut(s)	33
KroI	GCCGGC	1 cut(s)	162
KroNI	GCCGGC	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	122, 182, 202
MaeI	CTAG	3 cut(s)	30, 159, 284
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	3 cut(s)	124, 184, 204
MboI	GATC	3 cut(s)	122, 182, 202
MboII	GAAGA	4 cut(s)	60, 190, 284, 315
MflI	RGATCY	2 cut(s)	122, 202
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	2 cut(s)	54, 63
MroNI	GCCGGC	1 cut(s)	162
MspI	CCGG	2 cut(s)	163, 250
MspR9I	CCNGG	1 cut(s)	127
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	70, 103
NaeI	GCCGGC	1 cut(s)	164
NdeII	GATC	3 cut(s)	122, 182, 202
NgoMIV	GCCGGC	1 cut(s)	162
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	37
PctI	GAATGC	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	266, 316
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	122, 202
RsaI	GTAC	2 cut(s)	214, 233
RsaNI	GTAC	2 cut(s)	213, 232
SacI	GAGCTC	1 cut(s)	20
SatI	GCNGC	2 cut(s)	265, 315
Sau3AI	GATC	3 cut(s)	122, 182, 202
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	2 cut(s)	20, 233
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	4 cut(s)	89, 264, 288, 314
SspMI	CTAG	3 cut(s)	30, 159, 284
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	273
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	1 cut(s)	241
TauI	GCSGC	2 cut(s)	267, 317
TscAI	CASTG	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspRI	CASTG	1 cut(s)	89
XapI	RAATTY	1 cut(s)	241
XspI	CTAG	3 cut(s)	30, 159, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.