Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Reverse (-)

41246435 .. 41250041

Gene Structure 3607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G018740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGGAGAGAGCGAGAGCTCTCTAAACCCTAGCGCCGCCACCGATAGGTATCCTCTTTGGAGGACTCATTCACCTCCTCTCCAACGTTCACTCCGGCGTACGAGTTCTCTTCACTATGGCTGCATGCCTTTCATCCTCCGACCGGACGATTTTCCAACAACGGCAAGGGATCTGATTGGCCGGGCACGACTGGTGGAGTTCAGTCCGGTCTGGTTCGGGCGGCGTTGTGGATATTGGGCTCGGCGGGCTTCTGCTCTCCTGCACGGTGGCGGTTGGGTAATGGCCCGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

11.08

Weight (kDa)

10.65

Isoelectric Point (pI)

83.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	36, 220, 244, 270
AclI	AACGTT	1 cut(s)	85
AclWI	GGATC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	178
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	45, 142
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	2 cut(s)	178, 282
ApeKI	GCWGC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	3 cut(s)	182, 286, 287
AsuHPI	GGTGA	1 cut(s)	63
AvaI	CYCGRG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	187
BanII	GRGCYC	2 cut(s)	20, 241
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	177
BciVI	GTATCC	1 cut(s)	60
BcnI	CCSGG	3 cut(s)	182, 286, 287
BfaI	CTAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	60
BisI	GCNGC	3 cut(s)	36, 121, 221
BlsI	GCNGC	3 cut(s)	37, 122, 222
Bme1390I	CCNGG	3 cut(s)	182, 286, 287
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	283
BmrFI	CCNGG	3 cut(s)	182, 286, 287
BpuMI	CCSGG	3 cut(s)	182, 286, 287
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	285
BsaWI	WCCGGW	2 cut(s)	142, 205
BsaXI	ACNNNNNCTCC	4 cut(s)	63, 75, 93, 105
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 142
Bse1I	ACTGG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	45, 142
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	180, 284
BsiEI	CGRYCG	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	5 cut(s)	94, 143, 181, 206, 286
BsiWI	CGTACG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	45, 142
BsnI	GGCC	2 cut(s)	180, 284
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	20, 187, 241
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	4 cut(s)	36, 220, 244, 270
BspANI	GGCC	2 cut(s)	180, 284
BspPI	GGATC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	125, 246
BstF5I	GGATG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstMCI	CGRYCG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	3 cut(s)	180, 284, 285
BstSLI	GKGCMC	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	180, 284
BtsCI	GGATG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	125, 246
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	283
Cfr9I	CCCGGG	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	6 cut(s)	18, 120, 180, 239, 248, 284
CviKI_1	RGCY	6 cut(s)	18, 120, 180, 239, 248, 284
CviQI	GTAC	1 cut(s)	99
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	20, 241
Eco53kI	GAGCTC	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	20, 241
FaeI	CATG	1 cut(s)	127
FaiI	YATR	2 cut(s)	117, 125
FatI	CATG	1 cut(s)	123
FauI	CCCGC	1 cut(s)	237
Fnu4HI	GCNGC	3 cut(s)	36, 121, 221
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	2 cut(s)	20, 241
Fsp4HI	GCNGC	3 cut(s)	36, 121, 221
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	3 cut(s)	36, 121, 221
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	180, 284
HapII	CCGG	5 cut(s)	94, 143, 181, 206, 286
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	5 cut(s)	94, 143, 181, 206, 286
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	140, 174
Hpy8I	GTNNAC	1 cut(s)	89
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	123, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	169
LpnPI	CCDG	7 cut(s)	107, 156, 176, 194, 196, 219, 272
Lsp1109I	GCAGC	1 cut(s)	107
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	85
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	101
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	3 cut(s)	20, 187, 241
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	3 cut(s)	106, 163, 179
MnlI	CCTC	5 cut(s)	54, 63, 84, 87, 146
MseI	TTAA	1 cut(s)	292
MspI	CCGG	5 cut(s)	94, 143, 181, 206, 286
MspR9I	CCNGG	3 cut(s)	182, 286, 287
MwoI	GCNNNNNNNGC	1 cut(s)	245
NciI	CCSGG	3 cut(s)	182, 286, 287
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	127
NmeAIII	GCCGAG	1 cut(s)	220
NspI	RCATGY	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	127
Pfl23II	CGTACG	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	37, 122, 222
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	20
Psp1406I	AACGTT	1 cut(s)	85
PspLI	CGTACG	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	292
SatI	GCNGC	3 cut(s)	36, 121, 221
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	3 cut(s)	182, 286, 287
SduI	GDGCHC	3 cut(s)	20, 187, 241
SetI	ASST	4 cut(s)	20, 50, 76, 88
SmaI	CCCGGG	1 cut(s)	287
SphI	GCATGC	1 cut(s)	127
SsiI	CCGC	4 cut(s)	36, 220, 244, 270
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	180, 284, 285
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	88
TauI	GCSGC	2 cut(s)	38, 223
Tru1I	TTAA	1 cut(s)	292
Tru9I	TTAA	1 cut(s)	292
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	121
TspMI	CCCGGG	1 cut(s)	285
XceI	RCATGY	1 cut(s)	127
XmaI	CCCGGG	1 cut(s)	285
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.