Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Reverse (-)

37668666 .. 37677993

Gene Structure 9328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGTCTTCTCCCACCCTTCCCATCCCCTCTACTTTCTATAATTTCGCATTTGAAAGATGCAGGGCATCAAGTTCAGATTCTTCATGCTAGAAAGGAGGCTAATAAAGCTGCACATACGTTGGCAGCGTTTGCTGTTGAGTTTGATCAAGTGTTCTTTTGGTCTGATACTCTATCATTTATTCAAGATCTACTCGAGGCATTGTATTACAGACAGATTTTCTCTATTTTTCTAAGGAACAAAAGCAATAATCAAGAGAACAATAATGAAATTTCTATAAAAAAACAAATGAGATTTGTAGGAAAATTTATTAACATGGGAGAGAGCGAGAGCTCTCTAAACCCTAGCGCCGCCACCGATAGGTATCCTCTTTGGAGGGCTCCTTCACCTCCTCTTCGCCGTTCACTCCAGCGTACGAGTTCTCTTCACTATGGCTGCATGCCTTTCATCCTCCGACGGGACGATTTTCCGAAGACGACAAGGGATCCGATTAGCCGGTGTCCTTTGCGCTATGGATTCGGTTTGGGGCTCGTGGTGTTGTGGGATCCCGGTGGTCCTATAGTTGGATTGCAGCCGCTCCTAGTCCGCGAGTGGTGGAGGAGAGATTGGTCAACAAGCGGGTTGATTTGGTTTGTACCGGTGCAGGCACGACTAGTGGAGTTCGGTCGAGGTCCGGTTCGGGCGGCGATGTCGATATTGGGCTCGGTGAGGCTTCGCTCTCTTGCACGGTGGAGGCTAGGTTATCCCTTGGTGGTTGCTCTTGTTCGGTGGCACGGATGGTTGCGGCATCCCGTCGGTAGTAGCGGCGGTGGTGCTTGGTTTCTCGTGTGTGGGGTGCCCGAGAGAAATCGGGTTCTCCTTACGAGCCGGTGTTGGGCCCATTCGCCGGGCCGACCTTTCTATGGGTCCGGATATGGGACCCGGTGTGTTGTTTCAAGAGAAGATGGAAAAAACGTGAACTTCCTAGAAGAGCAGAGAGGCTGTGGAGTTTGGGAACTCGGATGCTCTATTATGGACATAAATCGTGAAGCAAAGATATATGGTAACAAGCTTAGTGATAGACCTGACGCAATTCAGATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

40.98

Weight (kDa)

9.95

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	835
AccBSI	CCGCTC	1 cut(s)	577
AccII	CGCG	1 cut(s)	588
AccIII	TCCGGA	1 cut(s)	908
AciI	CCGC	8 cut(s)	351, 575, 586, 618, 683, 784, 804, 807
AclWI	GGATC	4 cut(s)	479, 492, 539, 552
AcsI	RAATTY	2 cut(s)	270, 305
AfaI	GTAC	2 cut(s)	415, 636
AfiI	CCNNNNNNNGG	7 cut(s)	360, 457, 563, 874, 886, 902, 915
AgeI	ACCGGT	1 cut(s)	637
AgsI	TTSAA	3 cut(s)	55, 185, 936
AhlI	ACTAGT	1 cut(s)	652
AluBI	AGCT	3 cut(s)	110, 333, 1051
AluI	AGCT	3 cut(s)	110, 333, 1051
Alw21I	GWGCWC	1 cut(s)	335
AlwI	GGATC	4 cut(s)	479, 492, 539, 552
Ama87I	CYCGRG	2 cut(s)	194, 839
Aor13HI	TCCGGA	1 cut(s)	908
AoxI	GGCC	2 cut(s)	876, 889
ApaI	GGGCCC	1 cut(s)	880
ApeKI	GCWGC	4 cut(s)	110, 125, 435, 571
ApoI	RAATTY	2 cut(s)	270, 305
AsiGI	ACCGGT	1 cut(s)	637
AspLEI	GCGC	2 cut(s)	350, 510
AspS9I	GGNCC	7 cut(s)	554, 671, 876, 877, 889, 906, 918
AsuC2I	CCSGG	3 cut(s)	549, 888, 922
AsuHPI	GGTGA	2 cut(s)	378, 718
AvaI	CYCGRG	2 cut(s)	194, 839
AvaII	GGWCC	4 cut(s)	554, 671, 906, 918
BaeGI	GKGCMC	2 cut(s)	840, 880
BamHI	GGATCC	2 cut(s)	484, 544
BanI	GGYRCC	1 cut(s)	835
BanII	GRGCYC	5 cut(s)	335, 382, 531, 704, 880
BauI	CACGAG	2 cut(s)	530, 824
BbsI	GAAGAC	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	4 cut(s)	97, 137, 422, 583
BccI	CCATC	4 cut(s)	31, 771, 938, 1072
BceAI	ACGGC	1 cut(s)	384
BciVI	GTATCC	1 cut(s)	375
BclI	TGATCA	1 cut(s)	145
BcnI	CCSGG	3 cut(s)	549, 888, 922
BcuI	ACTAGT	1 cut(s)	652
BfaI	CTAG	6 cut(s)	90, 345, 581, 653, 737, 965
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	375
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	9 cut(s)	111, 126, 351, 436, 572, 575, 684, 785, 805
BlsI	GCNGC	9 cut(s)	112, 127, 352, 437, 573, 576, 685, 786, 806
Bme1390I	CCNGG	3 cut(s)	549, 888, 922
Bme18I	GGWCC	4 cut(s)	554, 671, 906, 918
BmeT110I	CYCGRG	2 cut(s)	194, 839
BmgT120I	GGNCC	7 cut(s)	554, 671, 876, 877, 889, 906, 918
BmiI	GGNNCC	8 cut(s)	381, 486, 546, 837, 878, 907, 919, 920
BmrFI	CCNGG	3 cut(s)	549, 888, 922
BmsI	GCATC	4 cut(s)	49, 76, 796, 992
BpiI	GAAGAC	1 cut(s)	479
BpmI	CTGGAG	1 cut(s)	392
BpuMI	CCSGG	3 cut(s)	549, 888, 922
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	747
BsaWI	WCCGGW	3 cut(s)	637, 673, 908
BsaXI	ACNNNNNCTCC	2 cut(s)	724, 754
Bsc4I	CCNNNNNNNGG	7 cut(s)	360, 457, 563, 874, 886, 902, 915
Bse118I	RCCGGY	3 cut(s)	495, 637, 867
Bse8I	GATNNNNATC	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	908
BseDI	CCNNGG	1 cut(s)	747
BseGI	GGATG	5 cut(s)	23, 447, 782, 787, 1007
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	7 cut(s)	360, 457, 563, 874, 886, 902, 915
BseRI	GAGGAG	2 cut(s)	381, 613
BseSI	GKGCMC	2 cut(s)	840, 880
BseXI	GCAGC	4 cut(s)	97, 137, 422, 583
BsgI	GTGCAG	2 cut(s)	96, 662
Bsh1236I	CGCG	1 cut(s)	588
Bsh1285I	CGRYCG	1 cut(s)	667
BshFI	GGCC	2 cut(s)	878, 891
BshNI	GGYRCC	1 cut(s)	835
BshTI	ACCGGT	1 cut(s)	637
BsiEI	CGRYCG	1 cut(s)	667
BsiHKAI	GWGCWC	1 cut(s)	335
BsiHKCI	CYCGRG	2 cut(s)	194, 839
BsiSI	CCGG	8 cut(s)	496, 549, 638, 674, 868, 887, 909, 922
BsiWI	CGTACG	1 cut(s)	413
BslFI	GGGAC	2 cut(s)	473, 931
BslI	CCNNNNNNNGG	7 cut(s)	360, 457, 563, 874, 886, 902, 915
BsmFI	GGGAC	2 cut(s)	473, 931
BsnI	GGCC	2 cut(s)	878, 891
BsoBI	CYCGRG	2 cut(s)	194, 839
Bsp120I	GGGCCC	1 cut(s)	876
Bsp1286I	GDGCHC	6 cut(s)	335, 382, 531, 704, 840, 880
Bsp13I	TCCGGA	1 cut(s)	908
Bsp143I	GATC	4 cut(s)	145, 187, 484, 544
BspACI	CCGC	8 cut(s)	351, 575, 586, 618, 683, 784, 804, 807
BspANI	GGCC	2 cut(s)	878, 891
BspEI	TCCGGA	1 cut(s)	908
BspFNI	CGCG	1 cut(s)	588
BspLI	GGNNCC	8 cut(s)	381, 486, 546, 837, 878, 907, 919, 920
BspPI	GGATC	4 cut(s)	479, 492, 539, 552
BspQI	GCTCTTC	1 cut(s)	963
BspT107I	GGYRCC	1 cut(s)	835
BsrBI	CCGCTC	1 cut(s)	577
BsrFI	RCCGGY	3 cut(s)	495, 637, 867
BssAI	RCCGGY	3 cut(s)	495, 637, 867
BssECI	CCNNGG	1 cut(s)	747
BssMI	GATC	4 cut(s)	145, 187, 484, 544
BssSI	CACGAG	2 cut(s)	530, 824
BssT1I	CCWWGG	1 cut(s)	747
Bst2BI	CACGAG	2 cut(s)	530, 824
Bst4CI	ACNGT	1 cut(s)	729
Bst6I	CTCTTC	3 cut(s)	399, 429, 963
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	440, 645
BstDEI	CTNAG	3 cut(s)	233, 1052, 1083
BstF5I	GGATG	5 cut(s)	23, 447, 782, 787, 1007
BstFNI	CGCG	1 cut(s)	588
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	2 cut(s)	350, 510
BstKTI	GATC	4 cut(s)	148, 190, 487, 547
BstMBI	GATC	4 cut(s)	145, 187, 484, 544
BstMCI	CGRYCG	1 cut(s)	667
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 131
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	3 cut(s)	547, 886, 920
BstSFI	CTRYAG	1 cut(s)	558
BstSLI	GKGCMC	2 cut(s)	840, 880
BstUI	CGCG	1 cut(s)	588
BstV1I	GCAGC	4 cut(s)	97, 137, 422, 583
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	3 cut(s)	187, 484, 544
BstYI	RGATCY	3 cut(s)	187, 484, 544
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	878, 891
BtgZI	GCGATG	1 cut(s)	701
BtsCI	GGATG	5 cut(s)	23, 447, 782, 787, 1007
Cac8I	GCNNGC	2 cut(s)	440, 645
CfoI	GCGC	2 cut(s)	350, 510
Cfr10I	RCCGGY	3 cut(s)	495, 637, 867
Cfr13I	GGNCC	7 cut(s)	554, 671, 876, 877, 889, 906, 918
CseI	GACGC	1 cut(s)	1076
Csp6I	GTAC	2 cut(s)	414, 635
CspAI	ACCGGT	1 cut(s)	637
CviAII	CATG	3 cut(s)	86, 316, 439
CviQI	GTAC	2 cut(s)	414, 635
DdeI	CTNAG	3 cut(s)	233, 1052, 1083
DpnI	GATC	4 cut(s)	147, 189, 486, 546
DpnII	GATC	4 cut(s)	145, 187, 484, 544
Eam1104I	CTCTTC	3 cut(s)	399, 429, 963
EarI	CTCTTC	3 cut(s)	399, 429, 963
Ecl136II	GAGCTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	747
Eco24I	GRGCYC	5 cut(s)	335, 382, 531, 704, 880
Eco47I	GGWCC	4 cut(s)	554, 671, 906, 918
Eco53kI	GAGCTC	1 cut(s)	333
Eco88I	CYCGRG	2 cut(s)	194, 839
EcoICRI	GAGCTC	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	918
EcoT14I	CCWWGG	1 cut(s)	747
EcoT38I	GRGCYC	5 cut(s)	335, 382, 531, 704, 880
ErhI	CCWWGG	1 cut(s)	747
FaeI	CATG	3 cut(s)	89, 319, 442
FaqI	GGGAC	2 cut(s)	473, 931
FatI	CATG	3 cut(s)	85, 315, 438
FauI	CCCGC	1 cut(s)	611
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	9 cut(s)	111, 126, 351, 436, 572, 575, 684, 785, 805
FokI	GGATG	5 cut(s)	10, 434, 774, 789, 1014
FriOI	GRGCYC	5 cut(s)	335, 382, 531, 704, 880
Fsp4HI	GCNGC	9 cut(s)	111, 126, 351, 436, 572, 575, 684, 785, 805
FspBI	CTAG	6 cut(s)	90, 345, 581, 653, 737, 965
GlaI	GCGC	2 cut(s)	349, 509
GluI	GCNGC	9 cut(s)	111, 126, 351, 436, 572, 575, 684, 785, 805
GsuI	CTGGAG	1 cut(s)	392
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	878, 891
HapII	CCGG	8 cut(s)	496, 549, 638, 674, 868, 887, 909, 922
HgaI	GACGC	1 cut(s)	1076
HhaI	GCGC	2 cut(s)	350, 510
Hin1II	CATG	3 cut(s)	89, 319, 442
Hin6I	GCGC	2 cut(s)	348, 508
HinP1I	GCGC	2 cut(s)	348, 508
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HindIII	AAGCTT	1 cut(s)	1049
HinfI	GANTC	2 cut(s)	79, 516
HpaII	CCGG	8 cut(s)	496, 549, 638, 674, 868, 887, 909, 922
HphI	GGTGA	2 cut(s)	378, 718
Hpy166II	GTNNAC	3 cut(s)	404, 612, 958
Hpy188I	TCNGA	7 cut(s)	78, 166, 455, 471, 489, 1001, 1077
Hpy188III	TCNNGA	5 cut(s)	185, 254, 909, 936, 1025
Hpy8I	GTNNAC	3 cut(s)	404, 612, 958
Hpy99I	CGWCG	2 cut(s)	459, 797
HpyAV	CCTTC	2 cut(s)	28, 393
HpyCH4III	ACNGT	1 cut(s)	729
HpyCH4IV	ACGT	2 cut(s)	119, 954
HpyCH4V	TGCA	6 cut(s)	62, 113, 438, 571, 643, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 131
HpyF3I	CTNAG	3 cut(s)	233, 1052, 1083
HpySE526I	ACGT	2 cut(s)	119, 954
Hsp92II	CATG	3 cut(s)	89, 319, 442
HspAI	GCGC	2 cut(s)	348, 508
KflI	GGGWCCC	1 cut(s)	918
Kpn2I	TCCGGA	1 cut(s)	908
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	145, 187, 484, 544
LguI	GCTCTTC	1 cut(s)	963
LmnI	GCTCC	2 cut(s)	385, 582
Lsp1109I	GCAGC	4 cut(s)	97, 137, 422, 583
LweI	GCATC	4 cut(s)	49, 76, 796, 992
MaeI	CTAG	6 cut(s)	90, 345, 581, 653, 737, 965
MaeII	ACGT	2 cut(s)	119, 954
MaeIII	GTNAC	1 cut(s)	1043
MalI	GATC	4 cut(s)	147, 189, 486, 546
MbiI	CCGCTC	1 cut(s)	577
MboI	GATC	4 cut(s)	145, 187, 484, 544
MboII	GAAGA	6 cut(s)	74, 386, 416, 484, 953, 980
MflI	RGATCY	3 cut(s)	187, 484, 544
MhlI	GDGCHC	6 cut(s)	335, 382, 531, 704, 840, 880
MluCI	AATT	4 cut(s)	42, 270, 305, 1071
MmeI	TCCRAC	2 cut(s)	478, 544
MroI	TCCGGA	1 cut(s)	908
MseI	TTAA	1 cut(s)	312
MspI	CCGG	8 cut(s)	496, 549, 638, 674, 868, 887, 909, 922
MspR9I	CCNGG	3 cut(s)	549, 888, 922
MvnI	CGCG	1 cut(s)	588
MwoI	GCNNNNNNNGC	2 cut(s)	107, 131
NciI	CCSGG	3 cut(s)	549, 888, 922
NdeII	GATC	4 cut(s)	145, 187, 484, 544
NlaIII	CATG	3 cut(s)	89, 319, 442
NlaIV	GGNNCC	8 cut(s)	381, 486, 546, 837, 878, 907, 919, 920
NspI	RCATGY	1 cut(s)	442
PaeI	GCATGC	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	79, 516
Pfl23II	CGTACG	1 cut(s)	413
PinAI	ACCGGT	1 cut(s)	637
PkrI	GCNGC	9 cut(s)	112, 127, 352, 437, 573, 576, 685, 786, 806
PpuMI	RGGWCCY	1 cut(s)	918
Psp124BI	GAGCTC	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	918
PspLI	CGTACG	1 cut(s)	413
PspN4I	GGNNCC	8 cut(s)	381, 486, 546, 837, 878, 907, 919, 920
PspOMI	GGGCCC	1 cut(s)	876
PspPI	GGNCC	7 cut(s)	554, 671, 876, 877, 889, 906, 918
PspPPI	RGGWCCY	1 cut(s)	918
PspXI	VCTCGAGB	1 cut(s)	194
PsuI	RGATCY	3 cut(s)	187, 484, 544
RsaI	GTAC	2 cut(s)	415, 636
RsaNI	GTAC	2 cut(s)	414, 635
SacI	GAGCTC	1 cut(s)	335
SapI	GCTCTTC	1 cut(s)	963
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	9 cut(s)	111, 126, 351, 436, 572, 575, 684, 785, 805
Sau3AI	GATC	4 cut(s)	145, 187, 484, 544
Sau96I	GGNCC	7 cut(s)	554, 671, 876, 877, 889, 906, 918
ScrFI	CCNGG	3 cut(s)	549, 888, 922
SduI	GDGCHC	6 cut(s)	335, 382, 531, 704, 840, 880
SfaNI	GCATC	4 cut(s)	49, 76, 796, 992
SfcI	CTRYAG	1 cut(s)	558
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	4 cut(s)	554, 671, 906, 918
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SpeI	ACTAGT	1 cut(s)	652
SphI	GCATGC	1 cut(s)	442
Sse9I	AATT	4 cut(s)	42, 270, 305, 1071
SsiI	CCGC	8 cut(s)	351, 575, 586, 618, 683, 784, 804, 807
SspMI	CTAG	6 cut(s)	90, 345, 581, 653, 737, 965
SstI	GAGCTC	1 cut(s)	335
StyD4I	CCNGG	3 cut(s)	547, 886, 920
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	1 cut(s)	729
TaiI	ACGT	2 cut(s)	122, 957
TaqI	TCGA	3 cut(s)	195, 667, 692
TaqII	GACCGA	1 cut(s)	653
TasI	AATT	4 cut(s)	42, 270, 305, 1071
TauI	GCSGC	5 cut(s)	353, 577, 686, 787, 807
TfiI	GAWTC	2 cut(s)	79, 516
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseI	GCWGC	4 cut(s)	110, 125, 435, 571
TspDTI	ATGAA	3 cut(s)	74, 282, 436
TspGWI	ACGGA	1 cut(s)	789
VpaK11BI	GGWCC	4 cut(s)	554, 671, 906, 918
XapI	RAATTY	2 cut(s)	270, 305
XceI	RCATGY	1 cut(s)	442
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	6 cut(s)	90, 345, 581, 653, 737, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.