Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Reverse (-)

56168639 .. 56169169

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCCCCCATCCATATCTACCGCAACGAAATCTTCCGGGAAGTCGGCAATGCTTTCCTTCTCTCCGGCGGCAGCGAAGGCATCTCCGCCTCTCCCTCCTTCCGCTCTTTTTATCCGATTCGAGAATATCACCTTCCGGAGGAGCGAGGCTGCTGTTGACAAGAAACAATGTAATAGCAAGCCTCGTGATCCAAAGTCGAAGGAACTTGTAATGAGCGGGAAGACGGTATGGAAAAGCCCCGATGGTTATCTACCTGGTCGAATGGCTCCACCGATGAAATTTTACGTGTATATGGCACTTGCTTATGTGCCGATTGGTGTAATTTGGCTCACTCGGTATGTGAGGTTCGGAAGGATATTCTGCAACTTCAACATTGCATCACGGCTGTCATTGCTCTTGGATTGTTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0031985 GO:0032580 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

137

Amino Acids

15.25

Weight (kDa)

10.22

Isoelectric Point (pI)

64.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	104, 216
AccIII	TCCGGA	1 cut(s)	135
AciI	CCGC	5 cut(s)	21, 68, 86, 102, 216
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	138
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	253
AlwI	GGATC	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	71, 149
ApoI	RAATTY	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	121
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	83, 136
BccI	CCATC	2 cut(s)	16, 236
BceAI	ACGGC	1 cut(s)	398
BciT130I	CCWGG	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	37
BisI	GCNGC	3 cut(s)	69, 72, 150
BlsI	GCNGC	3 cut(s)	70, 73, 151
Bme1390I	CCNGG	2 cut(s)	37, 255
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	37, 255
BmsI	GCATC	2 cut(s)	89, 386
BpiI	GAAGAC	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	37
BsaAI	YACGTR	1 cut(s)	286
BsaBI	GATNNNNATC	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse3DI	GCAATG	3 cut(s)	54, 372, 389
Bse8I	GATNNNNATC	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	3 cut(s)	54, 372, 389
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	2 cut(s)	83, 136
BsiSI	CCGG	3 cut(s)	36, 65, 136
BslI	CCNNNNNNNGG	1 cut(s)	138
Bsp13I	TCCGGA	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	5 cut(s)	21, 68, 86, 102, 216
BspEI	TCCGGA	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	182
BsrBI	CCGCTC	2 cut(s)	104, 216
BsrDI	GCAATG	3 cut(s)	54, 372, 389
BssMI	GATC	1 cut(s)	187
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	179
BstENI	CCTNNNNNAGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	8
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 391
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	35, 253
BstV1I	GCAGC	2 cut(s)	83, 136
BstV2I	GAAGAC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	179
CsiI	ACCWGGT	1 cut(s)	253
CviJI	RGCY	6 cut(s)	149, 181, 237, 266, 328, 385
CviKI_1	RGCY	6 cut(s)	149, 181, 237, 266, 328, 385
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	253
FaiI	YATR	6 cut(s)	14, 229, 291, 293, 306, 339
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	3 cut(s)	69, 72, 150
Fsp4HI	GCNGC	3 cut(s)	69, 72, 150
GluI	GCNGC	3 cut(s)	69, 72, 150
HapII	CCGG	3 cut(s)	36, 65, 136
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	3 cut(s)	36, 65, 136
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	116, 350
Hpy188III	TCNNGA	3 cut(s)	121, 136, 185
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	6 cut(s)	67, 70, 108, 142, 193, 345
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	363, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 391
HpySE526I	ACGT	1 cut(s)	285
Kpn2I	TCCGGA	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	2 cut(s)	141, 271
LpnPI	CCDG	5 cut(s)	49, 78, 149, 240, 267
Lsp1109I	GCAGC	2 cut(s)	83, 136
LweI	GCATC	2 cut(s)	89, 386
MabI	ACCWGGT	1 cut(s)	253
MaeII	ACGT	1 cut(s)	285
MalI	GATC	1 cut(s)	189
MbiI	CCGCTC	2 cut(s)	104, 216
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	24, 232
MluCI	AATT	2 cut(s)	278, 321
MnlI	CCTC	6 cut(s)	99, 105, 132, 139, 192, 336
MroI	TCCGGA	1 cut(s)	135
MspI	CCGG	3 cut(s)	36, 65, 136
MspR9I	CCNGG	2 cut(s)	37, 255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	77, 391
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	117
PfoI	TCCNGGA	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	70, 73, 151
Ppu21I	YACGTR	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	267
PsrI	GAACNNNNNNTAC	2 cut(s)	329, 361
SatI	GCNGC	3 cut(s)	69, 72, 150
Sau3AI	GATC	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	37, 255
SetI	ASST	4 cut(s)	134, 256, 288, 347
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	2 cut(s)	89, 386
Sse9I	AATT	2 cut(s)	278, 321
SsiI	CCGC	5 cut(s)	21, 68, 86, 102, 216
StyD4I	CCNGG	2 cut(s)	35, 253
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	3 cut(s)	120, 197, 259
TasI	AATT	2 cut(s)	278, 321
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	117
TseI	GCWGC	2 cut(s)	71, 149
TspDTI	ATGAA	1 cut(s)	290
XagI	CCTNNNNNAGG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.