Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Reverse (-)

69919288 .. 69923151

Gene Structure 3864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00132880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCCCTTGCCCAACACTCTAGCATTTCGGGCCGGTCAATAGTAACGGCCACTAGGCCAGCAAGACTTGCTTTTCCTAAAGCAATGATTCTCTCTCGTCTCCACTCAAATAAGCATCTCTCTCTTTCTCAAGTCCTCATTGCAGAACCAACTTCCCAATACCACAAAACCAAGCTCCACCATTACCACCACAACTCACGAGCGAGAAAAGGTCCGACGAAGCGAGAAGACCGGACGAAGCTACAAGACCGGACGAGCGACGAGAGGAACTCCGAGCAGCAACCGAAGAAGACCGGGTTTGGGTCCGCTTCTTCTGCTATTTTTCTTCTCTCTCTCGATGCGGGTCGGTCGACTTGCAAAGAAGACCGAGACGAGAATCAAATGAACCGAAGAAGACCAGCAACCGAAGCGGCGGCGCAACTGGATCGGTCCGATTGCGATTTTTCTTCTCTCCCTCTCTATCTAGAAAGCAGGAAGTTGAGCGGCTTCGTGCGGAAAGGAATGCGGTGGCAAACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.69

Weight (kDa)

10.51

Isoelectric Point (pI)

63.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	483
AccI	GTMKAC	1 cut(s)	350
AciI	CCGC	7 cut(s)	306, 341, 410, 413, 483, 493, 505
AclWI	GGATC	1 cut(s)	432
AcoI	YGGCCR	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	300
AluBI	AGCT	2 cut(s)	175, 241
AluI	AGCT	2 cut(s)	175, 241
Alw26I	GTCTC	2 cut(s)	104, 363
AlwI	GGATC	1 cut(s)	432
AoxI	GGCC	3 cut(s)	31, 48, 56
ApeKI	GCWGC	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	4 cut(s)	31, 212, 303, 429
AsuC2I	CCSGG	1 cut(s)	295
AvaII	GGWCC	3 cut(s)	212, 303, 429
BauI	CACGAG	1 cut(s)	198
BbsI	GAAGAC	4 cut(s)	234, 296, 369, 400
BbvI	GCAGC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	104, 363
BfaI	CTAG	3 cut(s)	21, 54, 464
BisI	GCNGC	4 cut(s)	278, 411, 414, 484
BlsI	GCNGC	4 cut(s)	279, 412, 415, 485
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	3 cut(s)	212, 303, 429
BmgT120I	GGNCC	4 cut(s)	31, 212, 303, 429
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	2 cut(s)	124, 328
BpiI	GAAGAC	4 cut(s)	234, 296, 369, 400
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpuEI	CTTGAG	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	295
BsaWI	WCCGGW	2 cut(s)	231, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse118I	RCCGGY	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	2 cut(s)	90, 138
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMI	GCAATG	2 cut(s)	90, 138
BseNI	ACTGG	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	289
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	3 cut(s)	33, 50, 58
BsiEI	CGRYCG	1 cut(s)	350
BsiSI	CCGG	4 cut(s)	34, 232, 250, 294
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	2 cut(s)	104, 363
BsmBI	CGTCTC	2 cut(s)	104, 363
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	3 cut(s)	33, 50, 58
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	7 cut(s)	306, 341, 410, 413, 483, 493, 505
BspANI	GGCC	3 cut(s)	33, 50, 58
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	1 cut(s)	432
BsrBI	CCGCTC	1 cut(s)	483
BsrDI	GCAATG	2 cut(s)	90, 138
BsrFI	RCCGGY	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	426
BssAI	RCCGGY	1 cut(s)	33
BssMI	GATC	1 cut(s)	424
BssSI	CACGAG	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	2 cut(s)	104, 363
BstMBI	GATC	1 cut(s)	424
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 68, 314, 407
BstSCI	CCNGG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	4 cut(s)	234, 296, 369, 400
BsuRI	GGCC	3 cut(s)	33, 50, 58
Cac8I	GCNNGC	1 cut(s)	60
CfoI	GCGC	1 cut(s)	418
Cfr10I	RCCGGY	1 cut(s)	33
Cfr13I	GGNCC	4 cut(s)	31, 212, 303, 429
CpoI	CGGWCCG	1 cut(s)	429
CspI	CGGWCCG	1 cut(s)	429
CviJI	RGCY	6 cut(s)	33, 50, 58, 175, 241, 486
CviKI_1	RGCY	6 cut(s)	33, 50, 58, 175, 241, 486
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	48
Eco47I	GGWCC	3 cut(s)	212, 303, 429
Esp3I	CGTCTC	2 cut(s)	104, 363
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FauI	CCCGC	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	4 cut(s)	278, 411, 414, 484
Fsp4HI	GCNGC	4 cut(s)	278, 411, 414, 484
FspBI	CTAG	3 cut(s)	21, 54, 464
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	4 cut(s)	278, 411, 414, 484
HaeIII	GGCC	3 cut(s)	33, 50, 58
HapII	CCGG	4 cut(s)	34, 232, 250, 294
HhaI	GCGC	1 cut(s)	418
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HinfI	GANTC	2 cut(s)	88, 376
HpaII	CCGG	4 cut(s)	34, 232, 250, 294
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	3 cut(s)	216, 274, 433
Hpy188III	TCNNGA	3 cut(s)	198, 335, 464
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	2 cut(s)	220, 263
HpyCH4V	TGCA	2 cut(s)	143, 357
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 68, 314, 407
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	8 cut(s)	47, 72, 245, 263, 307, 407, 411, 457
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	124, 328
MaeI	CTAG	3 cut(s)	21, 54, 464
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	426
MbiI	CCGCTC	1 cut(s)	483
MboI	GATC	1 cut(s)	424
MboII	GAAGA	9 cut(s)	239, 298, 301, 303, 317, 374, 402, 405, 438
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	3 cut(s)	146, 258, 465
MspI	CCGG	4 cut(s)	34, 232, 250, 294
MspR9I	CCNGG	1 cut(s)	295
Mva1269I	GAATGC	1 cut(s)	507
MwoI	GCNNNNNNNGC	4 cut(s)	30, 68, 314, 407
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	1 cut(s)	424
NlaIV	GGNNCC	1 cut(s)	304
PctI	GAATGC	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	88, 376
PkrI	GCNGC	4 cut(s)	279, 412, 415, 485
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	4 cut(s)	31, 212, 303, 429
Rsr2I	CGGWCCG	1 cut(s)	429
RsrII	CGGWCCG	1 cut(s)	429
SalI	GTCGAC	1 cut(s)	349
SatI	GCNGC	4 cut(s)	278, 411, 414, 484
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	4 cut(s)	31, 212, 303, 429
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	3 cut(s)	177, 214, 243
SfaNI	GCATC	2 cut(s)	124, 328
SinI	GGWCC	3 cut(s)	212, 303, 429
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
SsiI	CCGC	7 cut(s)	306, 341, 410, 413, 483, 493, 505
SspMI	CTAG	3 cut(s)	21, 54, 464
StyD4I	CCNGG	1 cut(s)	293
TaqI	TCGA	2 cut(s)	336, 350
TaqII	GACCGA	3 cut(s)	336, 381, 417
TauI	GCSGC	3 cut(s)	413, 416, 486
TfiI	GAWTC	2 cut(s)	88, 376
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	398
VpaK11BI	GGWCC	3 cut(s)	212, 303, 429
XbaI	TCTAGA	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	350
XspI	CTAG	3 cut(s)	21, 54, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.