Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Forward (+)

37272198 .. 37272533

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG184900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCGACAACTCCGTCGTCGATTCCGTTCTCCATTACCTTTCTCAGCCGGAGCTGGCCCGAACGGAGACGAGCTGGAGCAGTTCGACCTCAGATCTTCGAATCTAAACGGCAAACCCGTCGCCGCGTCAACGCGAGGTGAGGAGGCTGAAGACGAAGCTTCAAAGGACGAGATCGAAAGCGCAAAGAGCTCTCAACAACCTGAGATTCATCGGCACCGTCTTCCTCATCACCAGACCGCAACCACTTTAGCTTTATCTACCTGTAAGTTGAATCTTCGTCTCCGCCTTCGCACCTCTTCTGGCGGCTTCGACCTCGTTCCTACCGCCGAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.29

Weight (kDa)

8.0

Isoelectric Point (pI)

78.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	213
AccII	CGCG	2 cut(s)	125, 133
AciI	CCGC	5 cut(s)	123, 237, 283, 303, 324
AcuI	CTGAAG	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	162, 271
AluBI	AGCT	5 cut(s)	53, 73, 158, 189, 251
AluI	AGCT	5 cut(s)	53, 73, 158, 189, 251
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	2 cut(s)	60, 284
AoxI	GGCC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	149, 221
AsuII	TTCGAA	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	191
BbsI	GAAGAC	2 cut(s)	156, 212
Bbv12I	GWGCWC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	124
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BcoDI	GTCTC	2 cut(s)	60, 284
BglII	AGATCT	2 cut(s)	92, 330
BisI	GCNGC	2 cut(s)	123, 304
BlsI	GCNGC	2 cut(s)	124, 305
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	215
BpiI	GAAGAC	2 cut(s)	156, 212
BpmI	CTGGAG	1 cut(s)	95
Bpu14I	TTCGAA	1 cut(s)	98
BseMII	CTCAG	3 cut(s)	57, 103, 192
BseRI	GAGGAG	1 cut(s)	155
Bsh1236I	CGCG	2 cut(s)	125, 133
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	48
BsmAI	GTCTC	2 cut(s)	60, 284
BsmBI	CGTCTC	2 cut(s)	60, 284
BsnI	GGCC	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	92, 171, 330
BspACI	CCGC	5 cut(s)	123, 237, 283, 303, 324
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	3 cut(s)	56, 102, 193
BspFNI	CGCG	2 cut(s)	125, 133
BspLI	GGNNCC	1 cut(s)	215
BspT104I	TTCGAA	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	213
BssMI	GATC	3 cut(s)	92, 171, 330
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	301
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	3 cut(s)	43, 89, 201
BstFNI	CGCG	2 cut(s)	125, 133
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	3 cut(s)	95, 174, 333
BstMAI	GTCTC	2 cut(s)	60, 284
BstMBI	GATC	3 cut(s)	92, 171, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstUI	CGCG	2 cut(s)	125, 133
BstV2I	GAAGAC	2 cut(s)	156, 212
BstX2I	RGATCY	2 cut(s)	92, 330
BstYI	RGATCY	2 cut(s)	92, 330
BsuRI	GGCC	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	56
CseI	GACGC	1 cut(s)	114
CviJI	RGCY	9 cut(s)	47, 53, 57, 73, 146, 158, 189, 251, 306
CviKI_1	RGCY	9 cut(s)	47, 53, 57, 73, 146, 158, 189, 251, 306
DdeI	CTNAG	3 cut(s)	43, 89, 201
DpnI	GATC	3 cut(s)	94, 173, 332
DpnII	GATC	3 cut(s)	92, 171, 330
DrdI	GACNNNNNNGTC	1 cut(s)	12
DseDI	GACNNNNNNGTC	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
EciI	GGCGGA	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	191
Esp3I	CGTCTC	2 cut(s)	60, 284
Fnu4HI	GCNGC	2 cut(s)	123, 304
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	123, 304
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	123, 304
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	182
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	4 cut(s)	21, 100, 205, 271
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	2 cut(s)	149, 221
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	2 cut(s)	92, 335
Hpy8I	GTNNAC	1 cut(s)	129
Hpy99I	CGWCG	3 cut(s)	18, 21, 122
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	3 cut(s)	43, 89, 201
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	92, 171, 330
LmnI	GCTCC	2 cut(s)	50, 76
LpnPI	CCDG	7 cut(s)	39, 59, 61, 213, 245, 274, 285
MalI	GATC	3 cut(s)	94, 173, 332
MboI	GATC	3 cut(s)	92, 171, 330
MboII	GAAGA	5 cut(s)	87, 161, 212, 266, 288
MflI	RGATCY	2 cut(s)	92, 330
MhlI	GDGCHC	1 cut(s)	191
MnlI	CCTC	7 cut(s)	98, 128, 133, 136, 234, 304, 323
MspI	CCGG	1 cut(s)	48
MvnI	CGCG	2 cut(s)	125, 133
MwoI	GCNNNNNNNGC	1 cut(s)	186
NdeII	GATC	3 cut(s)	92, 171, 330
NlaIV	GGNNCC	1 cut(s)	215
NspV	TTCGAA	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	2 cut(s)	22, 114
PfeI	GAWTC	4 cut(s)	21, 100, 205, 271
PkrI	GCNGC	2 cut(s)	124, 305
Psp124BI	GAGCTC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	56
PsuI	RGATCY	2 cut(s)	92, 330
SacI	GAGCTC	1 cut(s)	191
SatI	GCNGC	2 cut(s)	123, 304
Sau3AI	GATC	3 cut(s)	92, 171, 330
Sau96I	GGNCC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	191
SfuI	TTCGAA	1 cut(s)	98
SsiI	CCGC	5 cut(s)	123, 237, 283, 303, 324
SstI	GAGCTC	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	218
TaqI	TCGA	5 cut(s)	19, 84, 98, 174, 309
TauI	GCSGC	2 cut(s)	125, 306
TfiI	GAWTC	4 cut(s)	21, 100, 205, 271
TspDTI	ATGAA	1 cut(s)	197
TspGWI	ACGGA	2 cut(s)	14, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.