Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Reverse (-)

8866939 .. 8869372

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGAGAGAGCGAGAGCTTTCTAAACCCTAGCGCCGCCACCAATGGGTATCCTTTTCAGAGGACTCCTTCACCTCCTCTCCAGCGTTCGCTCCAGCGTACGAGTTCTCTTCACTATGGCTACATGCCATTCATCCTTCGATCGGACGATTTTCCAGCGACGGCCAGGGATCTAAGTGGCCGGGTGTCTTTTGCGCTATGGCTTCAGGTTTGGGGCTCTCTAGTGTTGTGGGATCCTGGTGGTCCTATAGTTGGATTGCAGCCGCTCCTAGTCGGCCAGTGGTGGAGTAGAGATTGGTCAACAAGCGGGTTGATCTGGTTTGTACTGGTGCAGACACGACTGGTGAAGTTCAGTCCGGTTTGGTTCAGGTGGCGATGTCATTATTGGGCTAGGCGGGCTTTTGCTCTCCTTCACGGTGGCGGCTGGGTTCTCCCTTGGTGGTTGCTCTTGTTCTGGTGGCGTAGATGGTTGCAAATCCCGTCAGCTCCGACAGCATCCTTCCTCACCATCTCGTTCGGCTCCGGCAACACAGGATCGTCTGATGCGACAACTCCGTCGTCGATTCCGTTCTCAATTACCTTTCTCAGCCGGAGCTGGCCCAAACAGAGACTATCTGGAGTAGTTAGGCCTCAGATCTTCGAATCCAAACGGCAAACCCATCGCCGCGTCGTCCAACTCCGGCAACTTGATATTTTGATGCGAGGTGAGGAGGCTGAAGACGAAGCTTCAAACGACGAGATCGAGAGCACAAAGAGCACTCAATCACCTAAGATTCATCGGCACCGTCTTCCAGCGGCTTCGACCTGTAAGTTGAATCTTCGTCTCCGCCTTCGAAGGCAACTCCAACCTTTTCTGGCGGCTTCAACCTCGTTCCTACCGCCGAGATATGAGATTGCATATGAGCTCCGATTTGAATCCGTCAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

35.67

Weight (kDa)

10.8

Isoelectric Point (pI)

74.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	780
AccBSI	CCGCTC	1 cut(s)	265
AccII	CGCG	1 cut(s)	666
AclWI	GGATC	4 cut(s)	177, 227, 240, 541
AcoI	YGGCCR	3 cut(s)	162, 178, 274
AcuI	CTGAAG	2 cut(s)	188, 735
AfaI	GTAC	2 cut(s)	100, 324
AfiI	CCNNNNNNNGG	3 cut(s)	45, 142, 251
AgsI	TTSAA	4 cut(s)	729, 814, 864, 914
AjnI	CCWGG	2 cut(s)	164, 235
AluBI	AGCT	5 cut(s)	18, 485, 594, 725, 904
AluI	AGCT	5 cut(s)	18, 485, 594, 725, 904
Alw21I	GWGCWC	3 cut(s)	749, 758, 906
Alw26I	GTCTC	2 cut(s)	601, 827
AlwI	GGATC	4 cut(s)	177, 227, 240, 541
AoxI	GGCC	5 cut(s)	162, 178, 274, 596, 626
ApeKI	GCWGC	1 cut(s)	259
AspLEI	GCGC	2 cut(s)	35, 196
AspS9I	GGNCC	2 cut(s)	242, 597
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	5 cut(s)	63, 355, 496, 716, 756
AsuII	TTCGAA	2 cut(s)	639, 832
AvaII	GGWCC	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	780
BanII	GRGCYC	2 cut(s)	218, 906
BbsI	GAAGAC	2 cut(s)	723, 779
Bbv12I	GWGCWC	3 cut(s)	749, 758, 906
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	3 cut(s)	459, 515, 666
BceAI	ACGGC	2 cut(s)	177, 665
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BciT130I	CCWGG	2 cut(s)	166, 237
BciVI	GTATCC	1 cut(s)	60
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	601, 827
BfaI	CTAG	4 cut(s)	30, 221, 269, 390
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	60
BglII	AGATCT	1 cut(s)	633
BisI	GCNGC	7 cut(s)	36, 260, 263, 421, 664, 795, 858
BlsI	GCNGC	7 cut(s)	37, 261, 264, 422, 665, 796, 859
Bme1390I	CCNGG	3 cut(s)	166, 182, 237
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	242, 597
BmiI	GGNNCC	3 cut(s)	234, 520, 782
BmrFI	CCNGG	3 cut(s)	166, 182, 237
BmsI	GCATC	3 cut(s)	503, 532, 687
BpiI	GAAGAC	2 cut(s)	723, 779
BpmI	CTGGAG	3 cut(s)	65, 77, 636
Bpu14I	TTCGAA	2 cut(s)	639, 832
BpuMI	CCSGG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	913
BsaJI	CCNNGG	2 cut(s)	165, 434
BsaWI	WCCGGW	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 142, 251
Bse1I	ACTGG	3 cut(s)	277, 330, 345
Bse8I	GATNNNNATC	1 cut(s)	913
BseBI	CCWGG	2 cut(s)	166, 237
BseDI	CCNNGG	2 cut(s)	165, 434
BseGI	GGATG	2 cut(s)	132, 494
BseJI	GATNNNNATC	1 cut(s)	913
BseLI	CCNNNNNNNGG	3 cut(s)	45, 142, 251
BseMII	CTCAG	2 cut(s)	598, 644
BseNI	ACTGG	3 cut(s)	277, 330, 345
BseRI	GAGGAG	2 cut(s)	66, 722
BseXI	GCAGC	1 cut(s)	271
BseYI	CCCAGC	1 cut(s)	423
BsgI	GTGCAG	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	666
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	5 cut(s)	164, 180, 276, 598, 628
BshNI	GGYRCC	1 cut(s)	780
BsiEI	CGRYCG	1 cut(s)	143
BsiHKAI	GWGCWC	3 cut(s)	749, 758, 906
BsiSI	CCGG	5 cut(s)	181, 356, 522, 589, 679
BsiWI	CGTACG	1 cut(s)	98
BslI	CCNNNNNNNGG	3 cut(s)	45, 142, 251
BsmAI	GTCTC	2 cut(s)	601, 827
BsmBI	CGTCTC	1 cut(s)	827
BsnI	GGCC	5 cut(s)	164, 180, 276, 598, 628
Bsp119I	TTCGAA	2 cut(s)	639, 832
Bsp1286I	GDGCHC	4 cut(s)	218, 749, 758, 906
Bsp143I	GATC	7 cut(s)	140, 169, 232, 312, 533, 633, 738
BspANI	GGCC	5 cut(s)	164, 180, 276, 598, 628
BspCNI	CTCAG	2 cut(s)	597, 643
BspFNI	CGCG	1 cut(s)	666
BspLI	GGNNCC	3 cut(s)	234, 520, 782
BspPI	GGATC	4 cut(s)	177, 227, 240, 541
BspT104I	TTCGAA	2 cut(s)	639, 832
BspT107I	GGYRCC	1 cut(s)	780
BsrBI	CCGCTC	1 cut(s)	265
BsrI	ACTGG	3 cut(s)	277, 330, 345
BssECI	CCNNGG	2 cut(s)	165, 434
BssMI	GATC	7 cut(s)	140, 169, 232, 312, 533, 633, 738
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	166, 237
Bst4CI	ACNGT	2 cut(s)	416, 785
Bst6I	CTCTTC	1 cut(s)	114
BstBI	TTCGAA	2 cut(s)	639, 832
BstC8I	GCNNGC	2 cut(s)	396, 596
BstDEI	CTNAG	4 cut(s)	173, 584, 630, 768
BstF5I	GGATG	2 cut(s)	132, 494
BstFNI	CGCG	1 cut(s)	666
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	35, 196
BstKTI	GATC	7 cut(s)	143, 172, 235, 315, 536, 636, 741
BstMAI	GTCTC	2 cut(s)	601, 827
BstMBI	GATC	7 cut(s)	140, 169, 232, 312, 533, 633, 738
BstMCI	CGRYCG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	395, 491, 753
BstNI	CCWGG	2 cut(s)	166, 237
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	3 cut(s)	164, 180, 235
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	2 cut(s)	723, 779
BstX2I	RGATCY	3 cut(s)	169, 232, 633
BstYI	RGATCY	3 cut(s)	169, 232, 633
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	5 cut(s)	164, 180, 276, 598, 628
BtgZI	GCGATG	2 cut(s)	388, 644
BtsCI	GGATG	2 cut(s)	132, 494
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	396, 596
CfoI	GCGC	2 cut(s)	35, 196
Cfr13I	GGNCC	2 cut(s)	242, 597
CseI	GACGC	1 cut(s)	655
Csp6I	GTAC	2 cut(s)	99, 323
CviAII	CATG	1 cut(s)	124
CviQI	GTAC	2 cut(s)	99, 323
DdeI	CTNAG	4 cut(s)	173, 584, 630, 768
DpnI	GATC	7 cut(s)	142, 171, 234, 314, 535, 635, 740
DpnII	GATC	7 cut(s)	140, 169, 232, 312, 533, 633, 738
DrdI	GACNNNNNNGTC	1 cut(s)	553
DseDI	GACNNNNNNGTC	1 cut(s)	553
EaeI	YGGCCR	3 cut(s)	162, 178, 274
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	815
Ecl136II	GAGCTC	1 cut(s)	904
Eco130I	CCWWGG	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	628
Eco24I	GRGCYC	2 cut(s)	218, 906
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	904
Eco57I	CTGAAG	2 cut(s)	188, 735
EcoICRI	GAGCTC	1 cut(s)	904
EcoRII	CCWGG	2 cut(s)	164, 235
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	2 cut(s)	218, 906
ErhI	CCWWGG	1 cut(s)	434
Esp3I	CGTCTC	1 cut(s)	827
FaeI	CATG	1 cut(s)	127
FaiI	YATR	8 cut(s)	117, 125, 199, 248, 888, 898, 900, 928
FatI	CATG	1 cut(s)	123
FauI	CCCGC	2 cut(s)	299, 387
FauNDI	CATATG	1 cut(s)	898
Fnu4HI	GCNGC	7 cut(s)	36, 260, 263, 421, 664, 795, 858
FokI	GGATG	2 cut(s)	119, 481
FriOI	GRGCYC	2 cut(s)	218, 906
Fsp4HI	GCNGC	7 cut(s)	36, 260, 263, 421, 664, 795, 858
FspBI	CTAG	4 cut(s)	30, 221, 269, 390
GlaI	GCGC	2 cut(s)	34, 195
GluI	GCNGC	7 cut(s)	36, 260, 263, 421, 664, 795, 858
GsaI	CCCAGC	1 cut(s)	427
GsuI	CTGGAG	3 cut(s)	65, 77, 636
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	5 cut(s)	164, 180, 276, 598, 628
HapII	CCGG	5 cut(s)	181, 356, 522, 589, 679
HgaI	GACGC	1 cut(s)	655
HhaI	GCGC	2 cut(s)	35, 196
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	2 cut(s)	33, 194
HinP1I	GCGC	2 cut(s)	33, 194
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	6 cut(s)	64, 562, 641, 772, 814, 914
HpaII	CCGG	5 cut(s)	181, 356, 522, 589, 679
HphI	GGTGA	5 cut(s)	63, 355, 496, 716, 756
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	6 cut(s)	60, 145, 489, 541, 633, 908
Hpy188III	TCNNGA	3 cut(s)	615, 742, 922
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	5 cut(s)	163, 559, 562, 671, 737
HpyAV	CCTTC	6 cut(s)	78, 146, 419, 508, 828, 839
HpyCH4III	ACNGT	2 cut(s)	416, 785
HpyCH4V	TGCA	4 cut(s)	259, 331, 472, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	395, 491, 753
HpyF3I	CTNAG	4 cut(s)	173, 584, 630, 768
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	2 cut(s)	33, 194
Kzo9I	GATC	7 cut(s)	140, 169, 232, 312, 533, 633, 738
LmnI	GCTCC	6 cut(s)	96, 270, 490, 524, 591, 909
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	3 cut(s)	503, 532, 687
MaeI	CTAG	4 cut(s)	30, 221, 269, 390
MalI	GATC	7 cut(s)	142, 171, 234, 314, 535, 635, 740
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	7 cut(s)	140, 169, 232, 312, 533, 633, 738
MboII	GAAGA	5 cut(s)	101, 628, 728, 779, 809
MflI	RGATCY	3 cut(s)	169, 232, 633
MhlI	GDGCHC	4 cut(s)	218, 749, 758, 906
MluCI	AATT	1 cut(s)	573
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	4 cut(s)	232, 512, 697, 868
MnlI	CCTC	9 cut(s)	54, 84, 87, 512, 639, 695, 700, 703, 877
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	5 cut(s)	181, 356, 522, 589, 679
MspR9I	CCNGG	3 cut(s)	166, 182, 237
MvaI	CCWGG	2 cut(s)	166, 237
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	3 cut(s)	395, 491, 753
NciI	CCSGG	1 cut(s)	182
NdeI	CATATG	1 cut(s)	898
NdeII	GATC	7 cut(s)	140, 169, 232, 312, 533, 633, 738
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	3 cut(s)	234, 520, 782
NmeAIII	GCCGAG	1 cut(s)	906
NspI	RCATGY	1 cut(s)	127
NspV	TTCGAA	2 cut(s)	639, 832
PceI	AGGCCT	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	3 cut(s)	542, 563, 738
PfeI	GAWTC	5 cut(s)	562, 641, 772, 814, 914
Pfl23II	CGTACG	1 cut(s)	98
PkrI	GCNGC	7 cut(s)	37, 261, 264, 422, 665, 796, 859
Ple19I	CGATCG	1 cut(s)	143
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	906
Psp6I	CCWGG	2 cut(s)	164, 235
PspFI	CCCAGC	1 cut(s)	423
PspGI	CCWGG	2 cut(s)	164, 235
PspLI	CGTACG	1 cut(s)	98
PspN4I	GGNNCC	3 cut(s)	234, 520, 782
PspPI	GGNCC	2 cut(s)	242, 597
PsuI	RGATCY	3 cut(s)	169, 232, 633
PvuI	CGATCG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	100, 324
RsaNI	GTAC	2 cut(s)	99, 323
SacI	GAGCTC	1 cut(s)	906
SatI	GCNGC	7 cut(s)	36, 260, 263, 421, 664, 795, 858
Sau3AI	GATC	7 cut(s)	140, 169, 232, 312, 533, 633, 738
Sau96I	GGNCC	2 cut(s)	242, 597
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	3 cut(s)	166, 182, 237
SduI	GDGCHC	4 cut(s)	218, 749, 758, 906
SfaNI	GCATC	3 cut(s)	503, 532, 687
SfcI	CTRYAG	1 cut(s)	246
SfuI	TTCGAA	2 cut(s)	639, 832
SinI	GGWCC	1 cut(s)	242
Sse9I	AATT	1 cut(s)	573
SseBI	AGGCCT	1 cut(s)	628
SspMI	CTAG	4 cut(s)	30, 221, 269, 390
SstI	GAGCTC	1 cut(s)	906
StuI	AGGCCT	1 cut(s)	628
StyD4I	CCNGG	3 cut(s)	164, 180, 235
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	2 cut(s)	416, 785
TaqI	TCGA	6 cut(s)	139, 560, 639, 741, 800, 832
TasI	AATT	1 cut(s)	573
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	6 cut(s)	38, 265, 423, 666, 797, 860
TfiI	GAWTC	5 cut(s)	562, 641, 772, 814, 914
TscAI	CASTG	1 cut(s)	284
TseI	GCWGC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	121, 764
TspGWI	ACGGA	3 cut(s)	543, 555, 907
TspRI	CASTG	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	242
XceI	RCATGY	1 cut(s)	127
XspI	CTAG	4 cut(s)	30, 221, 269, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.