Rroxscaffold_3G00227750

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
11988230 .. 11998703
10474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227750.1

Sequence Viewer

Length: 426 bp
ATGGCCACCACACTCCGCCCATTACCATTAATTCTGATGTTGTTAAGGCATCGTGATCCACCATTATACCATCCGACAAATAATGCCACTACTGGAGTGTTGTCATTGTGGTACTTGCCATCACATTCTGATGGGCCTCCTCCATCACCGCCTGCCTCAAAGCTGTTGAGACTTGAGAGTGAGGGTCTGTCTGCTTCTTCTGCGATTTGTCTTCTCTCTCTCGATTTGGGTCGGTCCGACTTGCGAAGAAGACCAGACAAGAATCAAAGGAACCGAAGAAGAACAGCAACCGAAGCGGCGACTGCGATCTGGGTCGGTCCGACTGCGATTTTTCTTCTCTCTCGAGAACTGGCCGACCATGAAAATTACGCTCAATCACCGTTAGATGTAAACACTCATGAAAAACTGAATAAGGGTGATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.63

Weight (kDa)

9.35

Isoelectric Point (pI)

69.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 16, 149, 296
AclWI GGATC 1 cut(s) 50
AcoI YGGCCR 2 cut(s) 3, 351
AfaI GTAC 1 cut(s) 113
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 3 cut(s) 3, 134, 351
AseI ATTAAT 1 cut(s) 29
AspS9I GGNCC 3 cut(s) 134, 234, 317
AsuHPI GGTGA 2 cut(s) 138, 369
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 2 cut(s) 234, 317
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 203, 256
BccI CCATC 4 cut(s) 78, 125, 127, 151
BcoDI GTCTC 1 cut(s) 163
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme18I GGWCC 2 cut(s) 234, 317
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 3 cut(s) 134, 234, 317
BmiI GGNNCC 1 cut(s) 272
BmsI GCATC 1 cut(s) 58
BpiI GAAGAC 2 cut(s) 203, 256
BpmI CTGGAG 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 97, 354
BseGI GGATG 1 cut(s) 70
BseNI ACTGG 2 cut(s) 97, 354
BseRI GAGGAG 1 cut(s) 129
BshFI GGCC 3 cut(s) 5, 136, 353
BsiHKCI CYCGRG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 163
BsnI GGCC 3 cut(s) 5, 136, 353
BsoBI CYCGRG 1 cut(s) 342
Bsp143I GATC 2 cut(s) 55, 306
BspACI CCGC 3 cut(s) 16, 149, 296
BspANI GGCC 3 cut(s) 5, 136, 353
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 272
BspPI GGATC 1 cut(s) 50
BsrI ACTGG 2 cut(s) 97, 354
BssMI GATC 2 cut(s) 55, 306
Bst4CI ACNGT 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 153
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 2 cut(s) 58, 309
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 2 cut(s) 55, 306
BstMWI GCNNNNNNNGC 3 cut(s) 200, 293, 302
BstV2I GAAGAC 2 cut(s) 203, 256
BsuRI GGCC 3 cut(s) 5, 136, 353
BtsCI GGATG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 153
CciI TCATGA 1 cut(s) 397
Cfr13I GGNCC 3 cut(s) 134, 234, 317
CpoI CGGWCCG 2 cut(s) 234, 317
Csp6I GTAC 1 cut(s) 112
CspI CGGWCCG 2 cut(s) 234, 317
CviAII CATG 2 cut(s) 359, 398
CviJI RGCY 4 cut(s) 5, 136, 163, 353
CviKI_1 RGCY 4 cut(s) 5, 136, 163, 353
CviQI GTAC 1 cut(s) 112
DpnI GATC 2 cut(s) 57, 308
DpnII GATC 2 cut(s) 55, 306
EaeI YGGCCR 2 cut(s) 3, 351
EciI GGCGGA 1 cut(s) 5
Eco47I GGWCC 2 cut(s) 234, 317
Eco88I CYCGRG 1 cut(s) 342
FaeI CATG 2 cut(s) 362, 401
FaiI YATR 4 cut(s) 67, 360, 399, 424
FatI CATG 2 cut(s) 358, 397
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 3 cut(s) 5, 136, 353
Hin1II CATG 2 cut(s) 362, 401
HinfI GANTC 1 cut(s) 262
HphI GGTGA 2 cut(s) 138, 369
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 5 cut(s) 36, 75, 130, 238, 321
Hpy188III TCNNGA 5 cut(s) 53, 221, 342, 344, 398
Hpy8I GTNNAC 1 cut(s) 391
HpyCH4III ACNGT 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 293, 302
Hsp92II CATG 2 cut(s) 362, 401
Kzo9I GATC 2 cut(s) 55, 306
LpnPI CCDG 5 cut(s) 78, 165, 267, 295, 335
LweI GCATC 1 cut(s) 58
MalI GATC 2 cut(s) 57, 308
MboI GATC 2 cut(s) 55, 306
MboII GAAGA 7 cut(s) 189, 203, 258, 261, 288, 291, 326
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 30, 364
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 98, 261, 344
MnlI CCTC 4 cut(s) 147, 150, 166, 175
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 29, 44
MslI CAYNNNNRTG 1 cut(s) 129
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 3 cut(s) 200, 293, 302
NdeII GATC 2 cut(s) 55, 306
NlaIII CATG 2 cut(s) 362, 401
NlaIV GGNNCC 1 cut(s) 272
PaeR7I CTCGAG 1 cut(s) 342
PagI TCATGA 1 cut(s) 397
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 3 cut(s) 134, 234, 317
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 129
Rsr2I CGGWCCG 2 cut(s) 234, 317
RsrII CGGWCCG 2 cut(s) 234, 317
SaqAI TTAA 2 cut(s) 29, 44
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 55, 306
Sau96I GGNCC 3 cut(s) 134, 234, 317
SetI ASST 1 cut(s) 165
SfaNI GCATC 1 cut(s) 58
Sfr274I CTCGAG 1 cut(s) 342
SinI GGWCC 2 cut(s) 234, 317
SlaI CTCGAG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 2 cut(s) 173, 342
SmoI CTYRAG 2 cut(s) 173, 342
Sse9I AATT 2 cut(s) 30, 364
SsiI CCGC 3 cut(s) 16, 149, 296
TaaI ACNGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 222, 343
TaqII GACCGA 2 cut(s) 222, 305
TasI AATT 2 cut(s) 30, 364
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 2 cut(s) 29, 44
Tru9I TTAA 2 cut(s) 29, 44
TspDTI ATGAA 2 cut(s) 375, 414
VpaK11BI GGWCC 2 cut(s) 234, 317
VspI ATTAAT 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.