RLG00000018752

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004887
Physical Location & Seq
Reverse (-)
35340737 .. 35341465
729 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018752

Sequence Viewer

Length: 348 bp
ATGAAGCCTCGACTGCAACTCCAGCAGCAGCAGTCGGGAAATGGAGTGCCTGGATTGAGGTCAGATATGGGTGATGTTCTTGATAAAAAAAACGTGGATGACGCTGCTGAGGTTGAGCGGGTCGGGGCGGTAGCCACAGAGGCGGAGGTGGTCGAGGAGGTGGAGGGCTTGGTCGACATTGCGGTGGTAGGTGCAGAAGAAGAAGAAGATTGCGAGGACCTGATCGGCGGTGGGAGCAGAAAACGAAGGATCAATGCGATCAAGTTTGTCGACGGAGCCGGAGAAGAGTGGTTAGACGAGGCGGCGTCAGAGTCGGTGGTGAGAGAGAGAAGAGAAAGATCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.55

Weight (kDa)

4.45

Isoelectric Point (pI)

62.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 118
AccI GTMKAC 2 cut(s) 174, 270
AciI CCGC 6 cut(s) 118, 128, 143, 182, 228, 302
AclWI GGATC 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 305
AjnI CCWGG 1 cut(s) 49
AlwI GGATC 1 cut(s) 257
ApeKI GCWGC 3 cut(s) 25, 28, 104
AspS9I GGNCC 1 cut(s) 217
AsuHPI GGTGA 2 cut(s) 83, 331
AvaII GGWCC 1 cut(s) 217
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 3 cut(s) 37, 40, 91
BciT130I CCWGG 1 cut(s) 51
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 4 cut(s) 26, 29, 105, 303
BlsI GCNGC 4 cut(s) 27, 30, 106, 304
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 5
Bpu10I CCTNAGC 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 305
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 99
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 3 cut(s) 37, 40, 91
BsgI GTGCAG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 279
Bsp143I GATC 4 cut(s) 222, 249, 258, 338
BspACI CCGC 6 cut(s) 118, 128, 143, 182, 228, 302
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 277
BspPI GGATC 1 cut(s) 257
BsrBI CCGCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 177
BssMI GATC 4 cut(s) 222, 249, 258, 338
BssNI GRCGYC 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 279, 325
BstACI GRCGYC 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 4 cut(s) 225, 252, 261, 341
BstMBI GATC 4 cut(s) 222, 249, 258, 338
BstMWI GCNNNNNNNGC 4 cut(s) 13, 22, 140, 234
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 3 cut(s) 37, 40, 91
BtsCI GGATG 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 217
CseI GACGC 2 cut(s) 110, 294
CviJI RGCY 4 cut(s) 7, 134, 168, 278
CviKI_1 RGCY 4 cut(s) 7, 134, 168, 278
DdeI CTNAG 1 cut(s) 108
DpnI GATC 4 cut(s) 224, 251, 260, 340
DpnII GATC 4 cut(s) 222, 249, 258, 338
Eam1104I CTCTTC 2 cut(s) 279, 325
EarI CTCTTC 2 cut(s) 279, 325
EciI GGCGGA 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 49
FaiI YATR 1 cut(s) 68
FauI CCCGC 1 cut(s) 111
FblI GTMKAC 2 cut(s) 174, 270
Fnu4HI GCNGC 4 cut(s) 26, 29, 105, 303
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 4 cut(s) 26, 29, 105, 303
GluI GCNGC 4 cut(s) 26, 29, 105, 303
GsuI CTGGAG 1 cut(s) 5
HapII CCGG 1 cut(s) 279
HgaI GACGC 2 cut(s) 110, 294
Hin1I GRCGYC 1 cut(s) 305
HincII GTYRAC 2 cut(s) 175, 271
HindII GTYRAC 2 cut(s) 175, 271
HinfI GANTC 1 cut(s) 311
HpaII CCGG 1 cut(s) 279
HphI GGTGA 2 cut(s) 83, 331
Hpy166II GTNNAC 2 cut(s) 175, 271
Hpy188I TCNGA 2 cut(s) 64, 310
Hpy188III TCNNGA 2 cut(s) 36, 80
Hpy8I GTNNAC 2 cut(s) 175, 271
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 240
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 16, 194
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 22, 140, 234
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 305
Kzo9I GATC 4 cut(s) 222, 249, 258, 338
LmnI GCTCC 2 cut(s) 234, 275
LpnPI CCDG 5 cut(s) 35, 36, 63, 233, 292
Lsp1109I GCAGC 3 cut(s) 37, 40, 91
MaeII ACGT 1 cut(s) 93
MalI GATC 4 cut(s) 224, 251, 260, 340
MbiI CCGCTC 1 cut(s) 118
MboI GATC 4 cut(s) 222, 249, 258, 338
MboII GAAGA 6 cut(s) 209, 212, 215, 218, 296, 342
MlyI GAGTC 1 cut(s) 320
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 4 cut(s) 13, 22, 140, 234
NdeII GATC 4 cut(s) 222, 249, 258, 338
NlaIV GGNNCC 1 cut(s) 277
PkrI GCNGC 4 cut(s) 27, 30, 106, 304
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 1 cut(s) 217
PspPPI RGGWCCY 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 182
SalI GTCGAC 2 cut(s) 173, 269
SatI GCNGC 4 cut(s) 26, 29, 105, 303
Sau3AI GATC 4 cut(s) 222, 249, 258, 338
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 51
SetI ASST 8 cut(s) 62, 96, 114, 150, 162, 193, 222, 347
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 182
SsiI CCGC 6 cut(s) 118, 128, 143, 182, 228, 302
StyD4I CCNGG 1 cut(s) 49
TaiI ACGT 1 cut(s) 96
TaqI TCGA 5 cut(s) 10, 153, 174, 270, 341
TauI GCSGC 1 cut(s) 305
TseI GCWGC 3 cut(s) 25, 28, 104
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 217
XmiI GTMKAC 2 cut(s) 174, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.