Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Forward (+)

34658409 .. 34659122

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCTTCGGGTCTAGGGGTCATGCGAGGCCGTGGGATCCCGGCGGTACTGCGATCGGTACGCGCCAATCCTAGTCGGCGATTGGTGGAAGAGAGATCGGGTGCGAGCACGATAGGGATTGCTGCTGCGGGTTTCACTTGGATGCGGTTCGGCTGCGACATCGACATCGGGCAAGGTGGCTTCGCTTCCTTACAACGTGATGGTTGGGCTTTAATTTGGTGGCTGATTTGGTTGCGTTCCCGCCGGGATCGGAGATGGCGAGCTTATTGGTGCCCCGCATTGGGTGGCGGGAGTAATCGGGTGTTCCTAGTAGGCTGTGTGCTGCGGTTATTTTCGGTGGATCGAGCCTTCCTAGATTCTATAAAAAGTCTTGGTATGATCACACTGCGTGAGTACCACAATTGCGTGCATTGGGCGAGCAATGTCCCTTATGTTGGGTCGAGTTTAGGTTTGATTGGTCTGCTTGATCTTCTACATGCCCGGATCGCAAATTCTGATTGTTGGGTCTACAATTTTCAAGGTCATGACAATAGTTCCGTTGTTGGTAATTATCTTGAGGATGATGAGGATTTACCTTCGAATTTTTCTAGAAAAGTTTCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.45

Weight (kDa)

9.54

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AccI	GTMKAC	1 cut(s)	507
AccII	CGCG	1 cut(s)	63
AciI	CCGC	7 cut(s)	44, 128, 145, 241, 276, 288, 325
AclWI	GGATC	5 cut(s)	31, 44, 255, 348, 491
AcsI	RAATTY	2 cut(s)	490, 580
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	3 cut(s)	48, 60, 395
AfiI	CCNNNNNNNGG	3 cut(s)	280, 281, 434
AgsI	TTSAA	2 cut(s)	518, 600
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw21I	GWGCWC	1 cut(s)	110
AlwI	GGATC	5 cut(s)	31, 44, 255, 348, 491
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	4 cut(s)	122, 125, 153, 322
ApoI	RAATTY	2 cut(s)	490, 580
Asp700I	GAANNNNTTC	1 cut(s)	595
AspLEI	GCGC	1 cut(s)	65
AsuC2I	CCSGG	3 cut(s)	41, 245, 481
AsuII	TTCGAA	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	4 cut(s)	109, 112, 140, 309
BccI	CCATC	2 cut(s)	194, 249
BceAI	ACGGC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	378
BcnI	CCSGG	3 cut(s)	41, 245, 481
BfaI	CTAG	5 cut(s)	14, 72, 308, 353, 588
BisI	GCNGC	4 cut(s)	123, 126, 154, 323
BlsI	GCNGC	4 cut(s)	124, 127, 155, 324
Bme1390I	CCNGG	3 cut(s)	41, 245, 481
BmiI	GGNNCC	2 cut(s)	38, 272
BmrFI	CCNGG	3 cut(s)	41, 245, 481
BmsI	GCATC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	575
BpuMI	CCSGG	3 cut(s)	41, 245, 481
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 281, 434
Bse3DI	GCAATG	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	147, 565
BseLI	CCNNNNNNNGG	3 cut(s)	280, 281, 434
BseMI	GCAATG	1 cut(s)	427
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	4 cut(s)	109, 112, 140, 309
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	41, 244, 481
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	3 cut(s)	280, 281, 434
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	30
Bsp119I	TTCGAA	1 cut(s)	578
Bsp1286I	GDGCHC	2 cut(s)	110, 275
Bsp143I	GATC	8 cut(s)	36, 53, 95, 247, 340, 378, 466, 483
BspACI	CCGC	7 cut(s)	44, 128, 145, 241, 276, 288, 325
BspANI	GGCC	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	38, 272
BspPI	GGATC	5 cut(s)	31, 44, 255, 348, 491
BspT104I	TTCGAA	1 cut(s)	578
BspT107I	GGYRCC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	427
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	8 cut(s)	36, 53, 95, 247, 340, 378, 466, 483
Bst6I	CTCTTC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	578
BstC8I	GCNNGC	4 cut(s)	106, 261, 407, 418
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	147, 565
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	8 cut(s)	39, 56, 98, 250, 343, 381, 469, 486
BstMBI	GATC	8 cut(s)	36, 53, 95, 247, 340, 378, 466, 483
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	3 cut(s)	39, 243, 479
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	109, 112, 140, 309
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	147, 565
BtsI	GCAGTG	1 cut(s)	383
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	4 cut(s)	106, 261, 407, 418
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	1 cut(s)	65
Csp6I	GTAC	3 cut(s)	47, 59, 394
CviAII	CATG	3 cut(s)	22, 476, 524
CviJI	RGCY	9 cut(s)	5, 30, 153, 180, 209, 223, 263, 315, 347
CviKI_1	RGCY	9 cut(s)	5, 30, 153, 180, 209, 223, 263, 315, 347
CviQI	GTAC	3 cut(s)	47, 59, 394
DpnI	GATC	8 cut(s)	38, 55, 97, 249, 342, 380, 468, 485
DpnII	GATC	8 cut(s)	36, 53, 95, 247, 340, 378, 466, 483
DraIII	CACNNNGTG	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
FaeI	CATG	3 cut(s)	25, 479, 527
FaiI	YATR	6 cut(s)	23, 362, 377, 432, 477, 525
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	3 cut(s)	21, 475, 523
FauI	CCCGC	4 cut(s)	121, 248, 281, 283
FbaI	TGATCA	1 cut(s)	378
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	4 cut(s)	123, 126, 154, 323
FokI	GGATG	2 cut(s)	154, 572
Fsp4HI	GCNGC	4 cut(s)	123, 126, 154, 323
FspBI	CTAG	5 cut(s)	14, 72, 308, 353, 588
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	4 cut(s)	123, 126, 154, 323
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	3 cut(s)	41, 244, 481
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	25, 479, 527
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	3 cut(s)	41, 244, 481
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	2 cut(s)	252, 496
Hpy188III	TCNNGA	3 cut(s)	524, 554, 588
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	2 cut(s)	358, 585
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	3 cut(s)	25, 479, 527
HspAI	GCGC	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	8 cut(s)	36, 53, 95, 247, 340, 378, 466, 483
LpnPI	CCDG	3 cut(s)	54, 257, 494
Lsp1109I	GCAGC	4 cut(s)	109, 112, 140, 309
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	5 cut(s)	14, 72, 308, 353, 588
MaeII	ACGT	1 cut(s)	196
MalI	GATC	8 cut(s)	38, 55, 97, 249, 342, 380, 468, 485
MboI	GATC	8 cut(s)	36, 53, 95, 247, 340, 378, 466, 483
MboII	GAAGA	2 cut(s)	101, 461
MfeI	CAATTG	1 cut(s)	400
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	110, 275
MluCI	AATT	6 cut(s)	213, 400, 490, 511, 547, 580
MnlI	CCTC	3 cut(s)	20, 550, 559
MroXI	GAANNNNTTC	1 cut(s)	595
MseI	TTAA	1 cut(s)	212
MslI	CAYNNNNRTG	1 cut(s)	140
MspI	CCGG	3 cut(s)	41, 244, 481
MspR9I	CCNGG	3 cut(s)	41, 245, 481
MunI	CAATTG	1 cut(s)	400
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	485
NciI	CCSGG	3 cut(s)	41, 245, 481
NdeII	GATC	8 cut(s)	36, 53, 95, 247, 340, 378, 466, 483
NlaIII	CATG	3 cut(s)	25, 479, 527
NlaIV	GGNNCC	2 cut(s)	38, 272
NspI	RCATGY	1 cut(s)	479
NspV	TTCGAA	1 cut(s)	578
PagI	TCATGA	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	595
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	4 cut(s)	124, 127, 155, 324
Ple19I	CGATCG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	38, 272
PsuI	RGATCY	1 cut(s)	36
PvuI	CGATCG	1 cut(s)	56
RsaI	GTAC	3 cut(s)	48, 60, 395
RsaNI	GTAC	3 cut(s)	47, 59, 394
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	4 cut(s)	123, 126, 154, 323
Sau3AI	GATC	8 cut(s)	36, 53, 95, 247, 340, 378, 466, 483
ScrFI	CCNGG	3 cut(s)	41, 245, 481
SduI	GDGCHC	2 cut(s)	110, 275
SetI	ASST	6 cut(s)	178, 199, 265, 451, 523, 577
SfaNI	GCATC	1 cut(s)	132
SfuI	TTCGAA	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	6 cut(s)	213, 400, 490, 511, 547, 580
SsiI	CCGC	7 cut(s)	44, 128, 145, 241, 276, 288, 325
SspMI	CTAG	5 cut(s)	14, 72, 308, 353, 588
StyD4I	CCNGG	3 cut(s)	39, 243, 479
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	4 cut(s)	162, 343, 440, 578
TasI	AATT	6 cut(s)	213, 400, 490, 511, 547, 580
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	4 cut(s)	122, 125, 153, 322
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	1 cut(s)	390
XapI	RAATTY	2 cut(s)	490, 580
XbaI	TCTAGA	1 cut(s)	587
XceI	RCATGY	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	507
XmnI	GAANNNNTTC	1 cut(s)	595
XspI	CTAG	5 cut(s)	14, 72, 308, 353, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.