Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Forward (+)

49309793 .. 49312698

Gene Structure 2906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00201640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGCCGAGCCACCGGGATAGTAACCGTATGCGCTACCTTCCTGCGAAGTAGTCATCGGGTTACCAAAGATGTCCTCCCTATGCACGGGGAACGAGAGGAAGAGTTTCGATCTCCTGCCGATCTCCTCCTCGTTGTTCCATGGAAGATCGATGGATCTATCGGCATCCGTAGGAACAGTGGGACCAAAGTTCGGAGCGATGGATCCACCTTCATCCGTAGGACTTGCGGGTCCAAAGTTGAGATCGAGAGATCCTCCAACCCGGACTTTCCGAAATGCCTTCATCTGTTGGCTCTCTCGGGATTTGAGGTTCGGGAACCAAAAGAAGACGTTCTTGTCTTCGATCGGCCCAAACGCTTGATTGAGGCCGATCTCTTGAATCTGCTCGAGAGTGGGACGCTTAAAGCCCTTATCATAAACCAACTTCCCAATACCACAAAACCAAGCCCCACCATTACCACCACAACTCACGAGCGAGAAAAGGTCCGACGAAGCGACGAGAAGACCCGGACGAAGCTGCAAGACCGGGACGAGCAGCGAAGGAACTCCGAGCAGCAACCAAAGAAGACCGGGTTTGGGTCTGCTTCTTCTGCTATTTTTCTTCTCTCTCTCAACACCAACCCACCAATGGACTCACCAAACCTTGCGGGTTGCTTCAGCTTCAGCGCAAGTGGGAGGCGGAGGAATGAGGAAGAGTTCAACTCTAATTTGTGCTCCGATCATGGCCGAATCGGTGGCCAAGATGGTGGTGGAGATTGGCAAAGGCCTCTGGTGCTGACCTTGTGGAGATTAGACTGGACCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

30.12

Weight (kDa)

9.2

Isoelectric Point (pI)

63.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	229, 335
AciI	CCGC	3 cut(s)	228, 647, 679
AclWI	GGATC	4 cut(s)	163, 198, 211, 246
AcoI	YGGCCR	2 cut(s)	724, 736
AcuI	CTGAAG	2 cut(s)	640, 646
AfiI	CCNNNNNNNGG	4 cut(s)	86, 192, 576, 628
AgsI	TTSAA	2 cut(s)	379, 700
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	2 cut(s)	517, 660
AluI	AGCT	2 cut(s)	517, 660
Alw21I	GWGCWC	1 cut(s)	716
AlwI	GGATC	4 cut(s)	163, 198, 211, 246
Ama87I	CYCGRG	2 cut(s)	298, 386
AoxI	GGCC	5 cut(s)	347, 366, 724, 736, 764
ApeKI	GCWGC	3 cut(s)	517, 535, 553
Asp700I	GAANNNNTTC	2 cut(s)	105, 330
AspLEI	GCGC	2 cut(s)	35, 668
AspS9I	GGNCC	5 cut(s)	183, 231, 348, 484, 798
AsuC2I	CCSGG	5 cut(s)	16, 263, 508, 527, 571
AsuHPI	GGTGA	1 cut(s)	627
AvaI	CYCGRG	2 cut(s)	298, 386
AvaII	GGWCC	4 cut(s)	183, 231, 484, 798
BalI	TGGCCA	1 cut(s)	738
BamHI	GGATCC	1 cut(s)	203
BauI	CACGAG	1 cut(s)	470
BbsI	GAAGAC	4 cut(s)	331, 333, 509, 572
Bbv12I	GWGCWC	1 cut(s)	716
BbvI	GCAGC	3 cut(s)	504, 547, 565
BccI	CCATC	3 cut(s)	146, 194, 737
BcnI	CCSGG	5 cut(s)	16, 263, 508, 527, 571
BisI	GCNGC	3 cut(s)	518, 536, 554
BlsI	GCNGC	3 cut(s)	519, 537, 555
Bme1390I	CCNGG	5 cut(s)	16, 263, 508, 527, 571
Bme18I	GGWCC	4 cut(s)	183, 231, 484, 798
BmeT110I	CYCGRG	2 cut(s)	298, 386
BmgT120I	GGNCC	5 cut(s)	183, 231, 348, 484, 798
BmiI	GGNNCC	4 cut(s)	184, 205, 232, 318
BmrFI	CCNGG	5 cut(s)	16, 263, 508, 527, 571
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	4 cut(s)	331, 333, 509, 572
BplI	GAGNNNNNCTC	4 cut(s)	239, 271, 686, 718
BpuMI	CCSGG	5 cut(s)	16, 263, 508, 527, 571
Bsa29I	ATCGAT	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 192, 576, 628
Bse1I	ACTGG	1 cut(s)	800
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	2 cut(s)	165, 213
BseLI	CCNNNNNNNGG	4 cut(s)	86, 192, 576, 628
BseNI	ACTGG	1 cut(s)	800
BseRI	GAGGAG	2 cut(s)	116, 119
BseXI	GCAGC	3 cut(s)	504, 547, 565
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	5 cut(s)	349, 368, 726, 738, 766
BshVI	ATCGAT	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	716
BsiHKCI	CYCGRG	2 cut(s)	298, 386
BsiSI	CCGG	5 cut(s)	15, 263, 508, 526, 570
BslFI	GGGAC	3 cut(s)	196, 409, 542
BslI	CCNNNNNNNGG	4 cut(s)	86, 192, 576, 628
BsmFI	GGGAC	3 cut(s)	196, 409, 542
BsnI	GGCC	5 cut(s)	349, 368, 726, 738, 766
BsoBI	CYCGRG	2 cut(s)	298, 386
Bsp1286I	GDGCHC	1 cut(s)	716
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	3 cut(s)	228, 647, 679
BspANI	GGCC	5 cut(s)	349, 368, 726, 738, 766
BspDI	ATCGAT	1 cut(s)	150
BspLI	GGNNCC	4 cut(s)	184, 205, 232, 318
BspPI	GGATC	4 cut(s)	163, 198, 211, 246
BsrI	ACTGG	1 cut(s)	800
BssECI	CCNNGG	1 cut(s)	140
BssSI	CACGAG	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	470
Bst4CI	ACNGT	2 cut(s)	28, 179
Bst6I	CTCTTC	2 cut(s)	96, 687
BstDSI	CCRYGG	1 cut(s)	140
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	165, 213
BstHHI	GCGC	2 cut(s)	35, 668
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 772
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	5 cut(s)	14, 261, 506, 525, 569
BstV1I	GCAGC	3 cut(s)	504, 547, 565
BstV2I	GAAGAC	4 cut(s)	331, 333, 509, 572
BstX2I	RGATCY	3 cut(s)	155, 203, 251
BstXI	CCANNNNNNTGG	1 cut(s)	746
BstYI	RGATCY	3 cut(s)	155, 203, 251
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	5 cut(s)	349, 368, 726, 738, 766
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	165, 213
BtsIMutI	CAGTG	1 cut(s)	184
CfoI	GCGC	2 cut(s)	35, 668
Cfr13I	GGNCC	5 cut(s)	183, 231, 348, 484, 798
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	1 cut(s)	406
CviAII	CATG	2 cut(s)	141, 722
DrdI	GACNNNNNNGTC	2 cut(s)	229, 335
DseDI	GACNNNNNNGTC	2 cut(s)	229, 335
EaeI	YGGCCR	2 cut(s)	724, 736
Eam1104I	CTCTTC	2 cut(s)	96, 687
EarI	CTCTTC	2 cut(s)	96, 687
EciI	GGCGGA	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	140
Eco147I	AGGCCT	1 cut(s)	766
Eco47I	GGWCC	4 cut(s)	183, 231, 484, 798
Eco57I	CTGAAG	2 cut(s)	640, 646
Eco88I	CYCGRG	2 cut(s)	298, 386
Eco91I	GGTNACC	1 cut(s)	61
EcoO65I	GGTNACC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	2 cut(s)	144, 725
FaiI	YATR	5 cut(s)	31, 83, 142, 416, 723
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	3 cut(s)	196, 409, 542
FatI	CATG	2 cut(s)	140, 721
FauI	CCCGC	2 cut(s)	221, 640
Fnu4HI	GCNGC	3 cut(s)	518, 536, 554
FokI	GGATG	2 cut(s)	152, 200
Fsp4HI	GCNGC	3 cut(s)	518, 536, 554
GlaI	GCGC	2 cut(s)	34, 667
GluI	GCNGC	3 cut(s)	518, 536, 554
HaeIII	GGCC	5 cut(s)	349, 368, 726, 738, 766
HapII	CCGG	5 cut(s)	15, 263, 508, 526, 570
HgaI	GACGC	1 cut(s)	406
HhaI	GCGC	2 cut(s)	35, 668
Hin1II	CATG	2 cut(s)	144, 725
Hin6I	GCGC	2 cut(s)	33, 666
HinP1I	GCGC	2 cut(s)	33, 666
HinfI	GANTC	3 cut(s)	379, 632, 729
HpaII	CCGG	5 cut(s)	15, 263, 508, 526, 570
HphI	GGTGA	1 cut(s)	627
Hpy188I	TCNGA	5 cut(s)	195, 273, 488, 550, 718
Hpy188III	TCNNGA	6 cut(s)	247, 300, 314, 376, 388, 470
Hpy99I	CGWCG	2 cut(s)	492, 500
HpyAV	CCTTC	4 cut(s)	49, 220, 290, 534
HpyCH4III	ACNGT	2 cut(s)	28, 179
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	2 cut(s)	85, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 772
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	144, 725
HspAI	GCGC	2 cut(s)	33, 666
LmnI	GCTCC	2 cut(s)	195, 719
LpnPI	CCDG	9 cut(s)	28, 56, 129, 276, 521, 539, 583, 755, 781
Lsp1109I	GCAGC	3 cut(s)	504, 547, 565
LweI	GCATC	1 cut(s)	174
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	22, 61
MboII	GAAGA	9 cut(s)	113, 157, 331, 338, 514, 577, 579, 593, 704
MflI	RGATCY	3 cut(s)	155, 203, 251
MhlI	GDGCHC	1 cut(s)	716
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	1 cut(s)	706
MluNI	TGGCCA	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	626
MmeI	TCCRAC	2 cut(s)	282, 511
Mox20I	TGGCCA	1 cut(s)	738
MroXI	GAANNNNTTC	2 cut(s)	105, 330
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	738
MspI	CCGG	5 cut(s)	15, 263, 508, 526, 570
MspR9I	CCNGG	5 cut(s)	16, 263, 508, 527, 571
MwoI	GCNNNNNNNGC	2 cut(s)	590, 772
NciI	CCSGG	5 cut(s)	16, 263, 508, 527, 571
NcoI	CCATGG	1 cut(s)	140
NlaIII	CATG	2 cut(s)	144, 725
NlaIV	GGNNCC	4 cut(s)	184, 205, 232, 318
NmeAIII	GCCGAG	1 cut(s)	32
PaeR7I	CTCGAG	1 cut(s)	386
PceI	AGGCCT	1 cut(s)	766
PdmI	GAANNNNTTC	2 cut(s)	105, 330
PfeI	GAWTC	2 cut(s)	379, 729
PkrI	GCNGC	3 cut(s)	519, 537, 555
Ple19I	CGATCG	1 cut(s)	346
PleI	GAGTC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	626
PspEI	GGTNACC	1 cut(s)	61
PspN4I	GGNNCC	4 cut(s)	184, 205, 232, 318
PspPI	GGNCC	5 cut(s)	183, 231, 348, 484, 798
PsuI	RGATCY	3 cut(s)	155, 203, 251
PvuI	CGATCG	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	3 cut(s)	518, 536, 554
Sau96I	GGNCC	5 cut(s)	183, 231, 348, 484, 798
SchI	GAGTC	1 cut(s)	626
ScrFI	CCNGG	5 cut(s)	16, 263, 508, 527, 571
SduI	GDGCHC	1 cut(s)	716
SetI	ASST	9 cut(s)	41, 212, 312, 333, 486, 519, 645, 662, 782
SfaNI	GCATC	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	386
SinI	GGWCC	4 cut(s)	183, 231, 484, 798
SlaI	CTCGAG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	1 cut(s)	706
SseBI	AGGCCT	1 cut(s)	766
SsiI	CCGC	3 cut(s)	228, 647, 679
StuI	AGGCCT	1 cut(s)	766
StyD4I	CCNGG	5 cut(s)	14, 261, 506, 525, 569
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	2 cut(s)	28, 179
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	5 cut(s)	109, 150, 246, 342, 387
TasI	AATT	1 cut(s)	706
TfiI	GAWTC	2 cut(s)	379, 729
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	3 cut(s)	517, 535, 553
TspDTI	ATGAA	2 cut(s)	202, 272
TspGWI	ACGGA	2 cut(s)	158, 206
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	4 cut(s)	183, 231, 484, 798
XcmI	CCANNNNNNNNNTGG	2 cut(s)	625, 746
XhoI	CTCGAG	1 cut(s)	386
XmnI	GAANNNNTTC	2 cut(s)	105, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.