Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Forward (+)

42990834 .. 42992666

Gene Structure 1833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018929

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTGGACTCGAAATGGCGCTCCTCGTCGGACATGGCTGGGCTCCGATCTCTAAGAGAAAGAAAGAGAAATGGAATTTATCAAAGGATGAGAGACAGCAGCTTGCAGTAGCAGAGAGCGTGGATGACGCTGCTGAGGTTGAGCAGGTCGGGGCGGTAGCCACAGAGGCGGAGGTGGTCAAGGAGGTGGAGGGCTTGGTCGACATTACGGTGGCAGGTGCAGAAGAAGAAGAAGATTGCGAGCCCCTGATCGGCGCTCCGGCAGCATCCTTCCTCACCATCTCGCTCGGCTCCGGCAACACAGGACCTTCGGATGCTAAAACTCCTTCATCGATTCCGTTCTCCATTACCGTTCTCAGCCGGAGCCGACCCAAACGGAGACGAGCTAGAGTAATTCGGCCTCAGATCTTCGAATCCAAACGGCAAACCCATCGCCGCGTCGTCCAACTCCGGCAACCTGACGATCCCGCAACGCGAGGCGAGGAGGCTGAAGACGAAGCTTCAAATGACGAGATCGAGAGCGCAAAGAGCTCTCAACGACCTGAGATTCATCGGCACCGTCTTCCTCATCACCAGACCGCAACCACTTTAGATTTATCTACCTGTAAGTTGAATCTTCTTTTGTTCATTTCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.29

Weight (kDa)

5.6

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	206
Acc36I	ACCTGC	2 cut(s)	136, 206
AccB1I	GGYRCC	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	2 cut(s)	438, 475
AciI	CCGC	5 cut(s)	155, 170, 436, 468, 579
AclWI	GGATC	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	510
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	504, 613
AluBI	AGCT	4 cut(s)	103, 386, 500, 531
AluI	AGCT	4 cut(s)	103, 386, 500, 531
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	2 cut(s)	88, 373
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	3 cut(s)	100, 131, 263
ApoI	RAATTY	1 cut(s)	76
AspLEI	GCGC	3 cut(s)	22, 257, 524
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	268, 563
AsuII	TTCGAA	2 cut(s)	411, 632
AvaII	GGWCC	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	555
BanII	GRGCYC	3 cut(s)	46, 246, 533
BbsI	GAAGAC	2 cut(s)	498, 554
Bbv12I	GWGCWC	1 cut(s)	533
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	112, 118, 275
BccI	CCATC	2 cut(s)	287, 438
BceAI	ACGGC	1 cut(s)	437
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BcoDI	GTCTC	2 cut(s)	88, 373
BfaI	CTAG	1 cut(s)	387
BfoI	RGCGCY	2 cut(s)	23, 258
BfuAI	ACCTGC	2 cut(s)	136, 206
BglI	GCCNNNNNGGC	1 cut(s)	167
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	4 cut(s)	101, 132, 264, 436
BlsI	GCNGC	4 cut(s)	102, 133, 265, 437
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	4 cut(s)	45, 292, 365, 557
BmsI	GCATC	2 cut(s)	275, 304
BpiI	GAAGAC	2 cut(s)	498, 554
Bpu10I	CCTNAGC	1 cut(s)	135
Bpu14I	TTCGAA	2 cut(s)	411, 632
Bsa29I	ATCGAT	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
BseCI	ATCGAT	1 cut(s)	332
BseGI	GGATG	4 cut(s)	94, 130, 266, 319
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	4 cut(s)	126, 370, 416, 534
BseRI	GAGGAG	2 cut(s)	14, 497
BseXI	GCAGC	3 cut(s)	112, 118, 275
BseYI	CCCAGC	1 cut(s)	39
BsgI	GTGCAG	1 cut(s)	240
Bsh1236I	CGCG	2 cut(s)	438, 475
BshFI	GGCC	1 cut(s)	400
BshNI	GGYRCC	1 cut(s)	555
BshVI	ATCGAT	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	533
BsiSI	CCGG	4 cut(s)	260, 294, 361, 451
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	88, 373
BsmBI	CGTCTC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	400
Bsp119I	TTCGAA	2 cut(s)	411, 632
Bsp1286I	GDGCHC	3 cut(s)	46, 246, 533
Bsp143I	GATC	5 cut(s)	48, 249, 405, 463, 513
BspACI	CCGC	5 cut(s)	155, 170, 436, 468, 579
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	4 cut(s)	127, 369, 415, 535
BspDI	ATCGAT	1 cut(s)	332
BspFNI	CGCG	2 cut(s)	438, 475
BspLI	GGNNCC	4 cut(s)	45, 292, 365, 557
BspMI	ACCTGC	2 cut(s)	136, 206
BspPI	GGATC	1 cut(s)	458
BspT104I	TTCGAA	2 cut(s)	411, 632
BspT107I	GGYRCC	1 cut(s)	555
BssMI	GATC	5 cut(s)	48, 249, 405, 463, 513
Bst4CI	ACNGT	3 cut(s)	211, 352, 560
BstBI	TTCGAA	2 cut(s)	411, 632
BstC8I	GCNNGC	2 cut(s)	105, 242
BstDEI	CTNAG	5 cut(s)	54, 135, 356, 402, 543
BstF5I	GGATG	4 cut(s)	94, 130, 266, 319
BstFNI	CGCG	2 cut(s)	438, 475
BstH2I	RGCGCY	2 cut(s)	23, 258
BstHHI	GCGC	3 cut(s)	22, 257, 524
BstKTI	GATC	5 cut(s)	51, 252, 408, 466, 516
BstMAI	GTCTC	2 cut(s)	88, 373
BstMBI	GATC	5 cut(s)	48, 249, 405, 463, 513
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 263, 528
BstUI	CGCG	2 cut(s)	438, 475
BstV1I	GCAGC	3 cut(s)	112, 118, 275
BstV2I	GAAGAC	2 cut(s)	498, 554
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
Bsu15I	ATCGAT	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	400
BsuTUI	ATCGAT	1 cut(s)	332
BtgZI	GCGATG	1 cut(s)	416
BtsCI	GGATG	4 cut(s)	94, 130, 266, 319
BveI	ACCTGC	2 cut(s)	136, 206
Cac8I	GCNNGC	2 cut(s)	105, 242
CfoI	GCGC	3 cut(s)	22, 257, 524
Cfr13I	GGNCC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	332
CseI	GACGC	2 cut(s)	137, 427
CviAII	CATG	1 cut(s)	35
DdeI	CTNAG	5 cut(s)	54, 135, 356, 402, 543
DpnI	GATC	5 cut(s)	50, 251, 407, 465, 515
DpnII	GATC	5 cut(s)	48, 249, 405, 463, 513
EciI	GGCGGA	1 cut(s)	185
Ecl136II	GAGCTC	1 cut(s)	531
Eco24I	GRGCYC	3 cut(s)	46, 246, 533
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	531
Eco57I	CTGAAG	1 cut(s)	510
EcoICRI	GAGCTC	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	305
EcoT38I	GRGCYC	3 cut(s)	46, 246, 533
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	1 cut(s)	38
FaiI	YATR	1 cut(s)	36
FatI	CATG	1 cut(s)	34
FauI	CCCGC	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	4 cut(s)	101, 132, 264, 436
FokI	GGATG	4 cut(s)	101, 137, 253, 326
FriOI	GRGCYC	3 cut(s)	46, 246, 533
Fsp4HI	GCNGC	4 cut(s)	101, 132, 264, 436
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	3 cut(s)	21, 256, 523
GluI	GCNGC	4 cut(s)	101, 132, 264, 436
GsaI	CCCAGC	1 cut(s)	43
HaeII	RGCGCY	2 cut(s)	23, 258
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	4 cut(s)	260, 294, 361, 451
HgaI	GACGC	2 cut(s)	137, 427
HhaI	GCGC	3 cut(s)	22, 257, 524
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	3 cut(s)	20, 255, 522
HinP1I	GCGC	3 cut(s)	20, 255, 522
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	498
HinfI	GANTC	5 cut(s)	9, 334, 413, 547, 613
HpaII	CCGG	4 cut(s)	260, 294, 361, 451
HphI	GGTGA	2 cut(s)	268, 563
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	4 cut(s)	32, 48, 313, 405
Hpy188III	TCNNGA	1 cut(s)	517
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	2 cut(s)	32, 443
HpyAV	CCTTC	3 cut(s)	280, 318, 336
HpyCH4III	ACNGT	3 cut(s)	211, 352, 560
HpyCH4V	TGCA	2 cut(s)	107, 221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 263, 528
HpyF3I	CTNAG	5 cut(s)	54, 135, 356, 402, 543
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	3 cut(s)	20, 255, 522
Kzo9I	GATC	5 cut(s)	48, 249, 405, 463, 513
LmnI	GCTCC	5 cut(s)	27, 49, 262, 296, 363
Lsp1109I	GCAGC	3 cut(s)	112, 118, 275
LweI	GCATC	2 cut(s)	275, 304
MaeI	CTAG	1 cut(s)	387
MalI	GATC	5 cut(s)	50, 251, 407, 465, 515
MboI	GATC	5 cut(s)	48, 249, 405, 463, 513
MboII	GAAGA	8 cut(s)	236, 239, 242, 245, 400, 503, 554, 608
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	3 cut(s)	46, 246, 533
MluCI	AATT	3 cut(s)	76, 393, 634
MlyI	GAGTC	1 cut(s)	3
MmeI	TCCRAC	2 cut(s)	10, 469
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	4 cut(s)	260, 294, 361, 451
MvnI	CGCG	2 cut(s)	438, 475
MwoI	GCNNNNNNNGC	3 cut(s)	167, 263, 528
NdeII	GATC	5 cut(s)	48, 249, 405, 463, 513
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	4 cut(s)	45, 292, 365, 557
NmeAIII	GCCGAG	1 cut(s)	267
NspV	TTCGAA	2 cut(s)	411, 632
PaqCI	CACCTGC	1 cut(s)	206
PfeI	GAWTC	4 cut(s)	334, 413, 547, 613
PkrI	GCNGC	4 cut(s)	102, 133, 265, 437
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
PpuMI	RGGWCCY	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	533
Psp5II	RGGWCCY	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	4 cut(s)	45, 292, 365, 557
PspPI	GGNCC	1 cut(s)	305
PspPPI	RGGWCCY	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	533
SalI	GTCGAC	1 cut(s)	200
SatI	GCNGC	4 cut(s)	101, 132, 264, 436
Sau3AI	GATC	5 cut(s)	48, 249, 405, 463, 513
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	1 cut(s)	3
SduI	GDGCHC	3 cut(s)	46, 246, 533
SfaNI	GCATC	2 cut(s)	275, 304
SfuI	TTCGAA	2 cut(s)	411, 632
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	76, 393, 634
SsiI	CCGC	5 cut(s)	155, 170, 436, 468, 579
SspMI	CTAG	1 cut(s)	387
SstI	GAGCTC	1 cut(s)	533
TaaI	ACNGT	3 cut(s)	211, 352, 560
TaqI	TCGA	6 cut(s)	12, 201, 332, 411, 516, 632
TasI	AATT	3 cut(s)	76, 393, 634
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	4 cut(s)	334, 413, 547, 613
TseI	GCWGC	3 cut(s)	100, 131, 263
TspDTI	ATGAA	3 cut(s)	318, 539, 616
TspGWI	ACGGA	2 cut(s)	327, 391
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.