Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Forward (+)

8299478 .. 8300780

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCACAATGAGAGACCCAGCTCAACGGTTGCCCCCCTGTTAGTGTCGGAGTTGAAGTCCGTGCTGCACTATCTGAGTCAAAACCATGCTGCACGACGACATATTGAGCCTCGATGCCGGACCGATTTGAGCCTCAATGACGGCGCGATTCTGGCGAGAAAACCATCCTCACGATCTTGGTCAGCTCCGGCCGCATCCTTCCTCACCATCTCATTCTGCTCCAGCAACACAAGACCGTTGGATGCGACAACTCTGTCGTCGATTTCGTTCTCCATTACCTTTCTCAGCCGGAGTTGGCCCGAACGAAGACTAGCTGGAGTAGTTAGGCCTCAGATCTTCAAATCCAAACGGCAAACCCATCGCCGCGTCGTCCAACTTCGGCAACTTGATAATCCCTTGACGCGAGGTGAGAAGGCTGAAGACGAAGCTTCAAACGAGCTGATTGAGAGCGCAAAGAGCTCTCAACCACCTAAGATTCATCGGCACCGTCTTCCACCGGCTTCAACCTGTAAGTTGAATCTTCGTCTCCGCCTTCGAAGGCAACTCCAACCTCTTCTGGCGGCTTCGACCTCGTTCCTACCGCCGAGATTTGAGATTGCATATCTGAGCTCCAATTTGCTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.49

Weight (kDa)

11.24

Isoelectric Point (pI)

76.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	483
AccII	CGCG	3 cut(s)	146, 366, 403
AciI	CCGC	5 cut(s)	192, 364, 529, 560, 581
AcoI	YGGCCR	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	438
AgsI	TTSAA	5 cut(s)	55, 340, 432, 504, 517
AluBI	AGCT	7 cut(s)	21, 185, 314, 428, 439, 459, 609
AluI	AGCT	7 cut(s)	21, 185, 314, 428, 439, 459, 609
Alw21I	GWGCWC	2 cut(s)	461, 611
Alw26I	GTCTC	2 cut(s)	7, 530
AoxI	GGCC	3 cut(s)	189, 296, 326
ApeKI	GCWGC	2 cut(s)	64, 89
AspLEI	GCGC	2 cut(s)	146, 452
AspS9I	GGNCC	2 cut(s)	120, 297
AsuHPI	GGTGA	2 cut(s)	196, 419
AsuII	TTCGAA	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	483
BanII	GRGCYC	2 cut(s)	461, 611
BbsI	GAAGAC	3 cut(s)	313, 426, 482
Bbv12I	GWGCWC	2 cut(s)	461, 611
BbvI	GCAGC	2 cut(s)	51, 76
BccI	CCATC	3 cut(s)	172, 215, 366
BceAI	ACGGC	2 cut(s)	157, 365
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BcoDI	GTCTC	2 cut(s)	7, 530
BfaI	CTAG	1 cut(s)	311
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	5 cut(s)	65, 90, 192, 364, 561
BlsI	GCNGC	5 cut(s)	66, 91, 193, 365, 562
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	120, 297
BmiI	GGNNCC	1 cut(s)	485
BmsI	GCATC	3 cut(s)	104, 203, 232
BpiI	GAAGAC	3 cut(s)	313, 426, 482
BpmI	CTGGAG	2 cut(s)	205, 336
Bpu14I	TTCGAA	1 cut(s)	535
BsaI	GGTCTC	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bse118I	RCCGGY	1 cut(s)	496
BseGI	GGATG	3 cut(s)	164, 194, 247
BseMII	CTCAG	4 cut(s)	65, 298, 344, 596
BseX3I	CGGCCG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	51, 76
BseYI	CCCAGC	1 cut(s)	17
BsgI	GTGCAG	2 cut(s)	50, 75
Bsh1236I	CGCG	3 cut(s)	146, 366, 403
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	3 cut(s)	191, 298, 328
BshNI	GGYRCC	1 cut(s)	483
BsiEI	CGRYCG	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	461, 611
BsiSI	CCGG	4 cut(s)	118, 188, 289, 497
BsmAI	GTCTC	2 cut(s)	7, 530
BsmBI	CGTCTC	1 cut(s)	530
BsnI	GGCC	3 cut(s)	191, 298, 328
Bso31I	GGTCTC	1 cut(s)	7
Bsp119I	TTCGAA	1 cut(s)	535
Bsp1286I	GDGCHC	2 cut(s)	461, 611
Bsp143I	GATC	2 cut(s)	173, 333
BspACI	CCGC	5 cut(s)	192, 364, 529, 560, 581
BspANI	GGCC	3 cut(s)	191, 298, 328
BspCNI	CTCAG	4 cut(s)	66, 297, 343, 597
BspFNI	CGCG	3 cut(s)	146, 366, 403
BspLI	GGNNCC	1 cut(s)	485
BspT104I	TTCGAA	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	496
BssAI	RCCGGY	1 cut(s)	496
BssMI	GATC	2 cut(s)	173, 333
Bst4CI	ACNGT	3 cut(s)	28, 237, 488
Bst6I	CTCTTC	1 cut(s)	558
BstBI	TTCGAA	1 cut(s)	535
BstDEI	CTNAG	5 cut(s)	74, 284, 330, 471, 605
BstF5I	GGATG	3 cut(s)	164, 194, 247
BstFNI	CGCG	3 cut(s)	146, 366, 403
BstHHI	GCGC	2 cut(s)	146, 452
BstKTI	GATC	2 cut(s)	176, 336
BstMAI	GTCTC	2 cut(s)	7, 530
BstMBI	GATC	2 cut(s)	173, 333
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 191, 456
BstUI	CGCG	3 cut(s)	146, 366, 403
BstV1I	GCAGC	2 cut(s)	51, 76
BstV2I	GAAGAC	3 cut(s)	313, 426, 482
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BstZI	CGGCCG	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	191, 298, 328
BtgZI	GCGATG	1 cut(s)	344
BtsCI	GGATG	3 cut(s)	164, 194, 247
CfoI	GCGC	2 cut(s)	146, 452
Cfr10I	RCCGGY	1 cut(s)	496
Cfr13I	GGNCC	2 cut(s)	120, 297
CpoI	CGGWCCG	1 cut(s)	120
CseI	GACGC	2 cut(s)	355, 409
CspI	CGGWCCG	1 cut(s)	120
CviAII	CATG	1 cut(s)	86
DdeI	CTNAG	5 cut(s)	74, 284, 330, 471, 605
DpnI	GATC	2 cut(s)	175, 335
DpnII	GATC	2 cut(s)	173, 333
DrdI	GACNNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	189
EagI	CGGCCG	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
EciI	GGCGGA	1 cut(s)	518
Ecl136II	GAGCTC	2 cut(s)	459, 609
EclXI	CGGCCG	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	328
Eco24I	GRGCYC	2 cut(s)	461, 611
Eco31I	GGTCTC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	120
Eco52I	CGGCCG	1 cut(s)	189
Eco53kI	GAGCTC	2 cut(s)	459, 609
Eco57I	CTGAAG	1 cut(s)	438
EcoICRI	GAGCTC	2 cut(s)	459, 609
EcoT38I	GRGCYC	2 cut(s)	461, 611
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	1 cut(s)	89
FaiI	YATR	3 cut(s)	87, 102, 601
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	5 cut(s)	65, 90, 192, 364, 561
FokI	GGATG	3 cut(s)	151, 181, 254
FriOI	GRGCYC	2 cut(s)	461, 611
Fsp4HI	GCNGC	5 cut(s)	65, 90, 192, 364, 561
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	2 cut(s)	145, 451
GluI	GCNGC	5 cut(s)	65, 90, 192, 364, 561
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	2 cut(s)	205, 336
HaeIII	GGCC	3 cut(s)	191, 298, 328
HapII	CCGG	4 cut(s)	118, 188, 289, 497
HgaI	GACGC	2 cut(s)	355, 409
HhaI	GCGC	2 cut(s)	146, 452
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	2 cut(s)	144, 450
HinP1I	GCGC	2 cut(s)	144, 450
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	4 cut(s)	76, 148, 475, 517
HpaII	CCGG	4 cut(s)	118, 188, 289, 497
HphI	GGTGA	2 cut(s)	196, 419
Hpy188I	TCNGA	4 cut(s)	49, 75, 333, 606
Hpy188III	TCNNGA	1 cut(s)	171
Hpy99I	CGWCG	3 cut(s)	99, 262, 371
HpyAV	CCTTC	4 cut(s)	208, 406, 531, 542
HpyCH4III	ACNGT	3 cut(s)	28, 237, 488
HpyCH4V	TGCA	4 cut(s)	4, 67, 92, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 191, 456
HpyF3I	CTNAG	5 cut(s)	74, 284, 330, 471, 605
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	2 cut(s)	144, 450
Kzo9I	GATC	2 cut(s)	173, 333
LmnI	GCTCC	3 cut(s)	190, 224, 614
Lsp1109I	GCAGC	2 cut(s)	51, 76
LweI	GCATC	3 cut(s)	104, 203, 232
MaeI	CTAG	1 cut(s)	311
MalI	GATC	2 cut(s)	175, 335
MboI	GATC	2 cut(s)	173, 333
MboII	GAAGA	6 cut(s)	318, 328, 431, 482, 512, 545
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	2 cut(s)	461, 611
MluCI	AATT	1 cut(s)	613
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	4 cut(s)	27, 219, 397, 571
MnlI	CCTC	8 cut(s)	120, 143, 178, 212, 339, 398, 561, 580
MspI	CCGG	4 cut(s)	118, 188, 289, 497
MvnI	CGCG	3 cut(s)	146, 366, 403
MwoI	GCNNNNNNNGC	3 cut(s)	152, 191, 456
NdeII	GATC	2 cut(s)	173, 333
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	485
NmeAIII	GCCGAG	1 cut(s)	609
NspV	TTCGAA	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	148, 475, 517
PkrI	GCNGC	5 cut(s)	66, 91, 193, 365, 562
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
Psp124BI	GAGCTC	2 cut(s)	461, 611
PspFI	CCCAGC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	2 cut(s)	120, 297
PsuI	RGATCY	1 cut(s)	333
Rsr2I	CGGWCCG	1 cut(s)	120
RsrII	CGGWCCG	1 cut(s)	120
SacI	GAGCTC	2 cut(s)	461, 611
SatI	GCNGC	5 cut(s)	65, 90, 192, 364, 561
Sau3AI	GATC	2 cut(s)	173, 333
Sau96I	GGNCC	2 cut(s)	120, 297
SchI	GAGTC	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	461, 611
SfaNI	GCATC	3 cut(s)	104, 203, 232
SfuI	TTCGAA	1 cut(s)	535
SinI	GGWCC	1 cut(s)	120
Sse9I	AATT	1 cut(s)	613
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	5 cut(s)	192, 364, 529, 560, 581
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	2 cut(s)	461, 611
StuI	AGGCCT	1 cut(s)	328
TaaI	ACNGT	3 cut(s)	28, 237, 488
TaqI	TCGA	4 cut(s)	112, 260, 535, 566
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	1 cut(s)	613
TauI	GCSGC	3 cut(s)	194, 366, 563
TfiI	GAWTC	3 cut(s)	148, 475, 517
TseI	GCWGC	2 cut(s)	64, 89
TspDTI	ATGAA	1 cut(s)	467
TspGWI	ACGGA	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	120
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.