Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Reverse (-)

34553318 .. 34564795

Gene Structure 11478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGGCGATCGGAGCTGATGGCGAGTATATGGCGGTATGGACACCCAAGCTCGGCCACCATTTTTCTTCGGACCACTTGTTTGGCGTTGATCGGATGTTGGGTTTTGATGAAATTGACAAGAAAAGAAGGGTTGAAAATGAGGTGGAGAGGAAATTGTTAAAAATTTTGGTGGCAAACACCTTTGTTCAAAGTTGGTACCGGTCAAAAAGCAAGGGCCAAAAGCATTGCACACCATTCATCTTGTCGTCCACTTTCAACCAATATTCCACTTCCACTCTCTCTTCCGTCTTCATCCTCTTCATTCCGGTACTCATTGCAGAACCAACTTCCCAATACCACAAAACCAAGCTCCACCATTACCACCACAACTCACGAGCGAAAAGGTCCGACGAAGCGGCGAGAAGACCGGACGAAGCTACAAGACCGGACGAGCGACGAGAGGAACTCCGAGCAGCAACCAAAGAAGACGGGTTTGGGTCCGCTTTTCCTCGCTACTTTTCTCTCTCTCTATCTAGAAAGCAGGAAGTTGAGCGGCTTCGTGCGGAAAGGAATGCGGTGGAAAACAAGATGAAGGGGAAGTTGGAACCCTACGAGCGTCAAAAACTCATAGAGGAAGGTAAGAATGCGAAGGAAGGCCTTCTTACATTGGAAGAAGACCTCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

222

Amino Acids

25.67

Weight (kDa)

9.18

Isoelectric Point (pI)

56.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	198
AccBSI	CCGCTC	1 cut(s)	535
AciI	CCGC	7 cut(s)	5, 35, 398, 483, 535, 545, 557
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	165
AfaI	GTAC	2 cut(s)	200, 312
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgeI	ACCGGT	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	137, 191, 259
AjuI	GAANNNNNNNTTGG	4 cut(s)	459, 491, 566, 598
AluBI	AGCT	4 cut(s)	17, 52, 352, 419
AluI	AGCT	4 cut(s)	17, 52, 352, 419
AoxI	GGCC	3 cut(s)	55, 217, 637
ApeKI	GCWGC	1 cut(s)	455
ApoI	RAATTY	1 cut(s)	165
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AsiGI	ACCGGT	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	639
Asp718I	GGTACC	1 cut(s)	198
AspS9I	GGNCC	4 cut(s)	73, 217, 387, 480
AvaII	GGWCC	3 cut(s)	73, 387, 480
BanI	GGYRCC	1 cut(s)	198
BauI	CACGAG	1 cut(s)	375
BbsI	GAAGAC	4 cut(s)	283, 412, 474, 663
BbvI	GCAGC	1 cut(s)	467
BccI	CCATC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	516
BisI	GCNGC	4 cut(s)	6, 399, 456, 536
BlsI	GCNGC	4 cut(s)	7, 400, 457, 537
Bme18I	GGWCC	3 cut(s)	73, 387, 480
BmgT120I	GGNCC	4 cut(s)	73, 217, 387, 480
BmiI	GGNNCC	3 cut(s)	200, 481, 588
BpiI	GAAGAC	4 cut(s)	283, 412, 474, 663
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
BsaWI	WCCGGW	4 cut(s)	201, 307, 409, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	201
Bse3DI	GCAATG	2 cut(s)	226, 315
BseGI	GGATG	2 cut(s)	102, 294
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	2 cut(s)	226, 315
BseXI	GCAGC	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	57, 219, 639
BshNI	GGYRCC	1 cut(s)	198
BshTI	ACCGGT	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	12
BsiSI	CCGG	4 cut(s)	202, 308, 410, 428
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmI	GAATGC	2 cut(s)	559, 631
BsnI	GGCC	3 cut(s)	57, 219, 639
Bsp143I	GATC	2 cut(s)	9, 91
BspACI	CCGC	7 cut(s)	5, 35, 398, 483, 535, 545, 557
BspANI	GGCC	3 cut(s)	57, 219, 639
BspLI	GGNNCC	3 cut(s)	200, 481, 588
BspT107I	GGYRCC	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	535
BsrDI	GCAATG	2 cut(s)	226, 315
BsrFI	RCCGGY	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	201
BssMI	GATC	2 cut(s)	9, 91
BssSI	CACGAG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	375
Bst6I	CTCTTC	2 cut(s)	289, 305
BstF5I	GGATG	2 cut(s)	102, 294
BstKTI	GATC	2 cut(s)	12, 94
BstMBI	GATC	2 cut(s)	9, 91
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	467
BstV2I	GAAGAC	4 cut(s)	283, 412, 474, 663
BstXI	CCANNNNNNTGG	1 cut(s)	83
BsuRI	GGCC	3 cut(s)	57, 219, 639
BtsCI	GGATG	2 cut(s)	102, 294
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	4 cut(s)	73, 217, 387, 480
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	2 cut(s)	199, 311
CspAI	ACCGGT	1 cut(s)	201
CviJI	RGCY	8 cut(s)	17, 52, 57, 219, 352, 419, 538, 639
CviKI_1	RGCY	8 cut(s)	17, 52, 57, 219, 352, 419, 538, 639
CviQI	GTAC	2 cut(s)	199, 311
DpnI	GATC	2 cut(s)	11, 93
DpnII	GATC	2 cut(s)	9, 91
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	289, 305
EarI	CTCTTC	2 cut(s)	289, 305
Eco147I	AGGCCT	1 cut(s)	639
Eco47I	GGWCC	3 cut(s)	73, 387, 480
FaiI	YATR	4 cut(s)	30, 32, 40, 611
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
Fnu4HI	GCNGC	4 cut(s)	6, 399, 456, 536
FokI	GGATG	2 cut(s)	109, 281
Fsp4HI	GCNGC	4 cut(s)	6, 399, 456, 536
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	4 cut(s)	6, 399, 456, 536
HaeIII	GGCC	3 cut(s)	57, 219, 639
HapII	CCGG	4 cut(s)	202, 308, 410, 428
HgaI	GACGC	1 cut(s)	587
HpaII	CCGG	4 cut(s)	202, 308, 410, 428
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	5 cut(s)	14, 73, 96, 391, 452
Hpy188III	TCNNGA	2 cut(s)	375, 516
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	2 cut(s)	395, 441
HpyAV	CCTTC	6 cut(s)	123, 568, 611, 625, 629, 650
HpyCH4V	TGCA	2 cut(s)	231, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
KpnI	GGTACC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	9, 91
LmnI	GCTCC	2 cut(s)	14, 357
LpnPI	CCDG	5 cut(s)	215, 321, 423, 441, 509
Lsp1109I	GCAGC	1 cut(s)	467
MaeI	CTAG	1 cut(s)	516
MalI	GATC	2 cut(s)	11, 93
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	2 cut(s)	9, 91
MboII	GAAGA	8 cut(s)	60, 276, 283, 292, 417, 479, 665, 668
MluCI	AATT	3 cut(s)	114, 155, 165
MmeI	TCCRAC	2 cut(s)	414, 564
MnlI	CCTC	6 cut(s)	136, 144, 308, 436, 501, 607
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	2 cut(s)	161, 667
MspI	CCGG	4 cut(s)	202, 308, 410, 428
Mva1269I	GAATGC	2 cut(s)	559, 631
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	2 cut(s)	9, 91
NlaIV	GGNNCC	3 cut(s)	200, 481, 588
NmeAIII	GCCGAG	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	639
PctI	GAATGC	2 cut(s)	559, 631
PdmI	GAANNNNTTC	1 cut(s)	639
PinAI	ACCGGT	1 cut(s)	201
PkrI	GCNGC	4 cut(s)	7, 400, 457, 537
Ple19I	CGATCG	1 cut(s)	12
PspN4I	GGNNCC	3 cut(s)	200, 481, 588
PspPI	GGNCC	4 cut(s)	73, 217, 387, 480
PvuI	CGATCG	1 cut(s)	12
RsaI	GTAC	2 cut(s)	200, 312
RsaNI	GTAC	2 cut(s)	199, 311
SaqAI	TTAA	2 cut(s)	161, 667
SatI	GCNGC	4 cut(s)	6, 399, 456, 536
Sau3AI	GATC	2 cut(s)	9, 91
Sau96I	GGNCC	4 cut(s)	73, 217, 387, 480
SetI	ASST	9 cut(s)	19, 54, 147, 185, 354, 389, 421, 622, 663
SinI	GGWCC	3 cut(s)	73, 387, 480
Sse9I	AATT	3 cut(s)	114, 155, 165
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	7 cut(s)	5, 35, 398, 483, 535, 545, 557
SspI	AATATT	1 cut(s)	266
SspMI	CTAG	1 cut(s)	516
StuI	AGGCCT	1 cut(s)	639
TasI	AATT	3 cut(s)	114, 155, 165
TauI	GCSGC	3 cut(s)	8, 401, 538
Tru1I	TTAA	2 cut(s)	161, 667
Tru9I	TTAA	2 cut(s)	161, 667
TseI	GCWGC	1 cut(s)	455
TspDTI	ATGAA	5 cut(s)	126, 229, 283, 292, 587
TspGWI	ACGGA	1 cut(s)	277
VpaK11BI	GGWCC	3 cut(s)	73, 387, 480
XapI	RAATTY	1 cut(s)	165
XbaI	TCTAGA	1 cut(s)	515
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.