Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Forward (+)

13149401 .. 13151052

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032289

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTGGGCTCGAAATGGCGCTCCTCGTCGGACATGGCTGGGCTCCGATCTTTGAGAGAAAGAAAGAGAAATGGAATTTTTCAAAGGATGAGAGACGAGCAGTGTCAGAGAAAGGGATTGCAGTGGCAGTTGCAGTCGCAGAGAGCGTGGAAGATGCTGTTGAGGTTGAGCGGGTCGGGGCGGTAGCCACAGAGGTGGAGGTGGTCGAGGAGGTGGAGGGGTTGGTCGACATTGCGGTGGCAGGTGCAGAAGAAGAAGAAGATTGCGAGGACCTGATCGGCGGTGGGAGAAGAAAACGAAGGATCAGTGCTATCAAGTTTGTCGACGGAGCCGGAGAAGAGAGGTTAGACGAGGCGGCGTCGGAGTCGGTGGTTGGTCATCTTGGCGAAGCTTACAATGAATGGGTTCACCAAGCTATTGTCAGCAAAGAAGGCCCCAGATTTTTTGGAAATGACTATTTGGAGGTGTTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:0080132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_hydroxylase

Protein Analysis

159

Amino Acids

17.22

Weight (kDa)

4.54

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	233
AccBSI	CCGCTC	1 cut(s)	172
AccI	GTMKAC	2 cut(s)	228, 324
AciI	CCGC	5 cut(s)	172, 182, 236, 282, 356
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	359
AgsI	TTSAA	1 cut(s)	84
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	392, 416
AluI	AGCT	2 cut(s)	392, 416
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	271, 434
AsuHPI	GGTGA	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	271
BanII	GRGCYC	2 cut(s)	12, 46
BcoDI	GTCTC	1 cut(s)	88
BfoI	RGCGCY	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	271, 434
BmiI	GGNNCC	3 cut(s)	45, 331, 436
BmsI	GCATC	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	231
BseRI	GAGGAG	2 cut(s)	14, 224
BseYI	CCCAGC	2 cut(s)	5, 39
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	88
BsmBI	CGTCTC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	12, 46
Bsp143I	GATC	3 cut(s)	48, 276, 303
BspACI	CCGC	5 cut(s)	172, 182, 236, 282, 356
BspANI	GGCC	1 cut(s)	435
BspLI	GGNNCC	3 cut(s)	45, 331, 436
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	311
BsrBI	CCGCTC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	231
BssMI	GATC	3 cut(s)	48, 276, 303
BssNI	GRCGYC	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	359
BstF5I	GGATG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	3 cut(s)	51, 279, 306
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	48, 276, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	2 cut(s)	108, 129
BtsIMutI	CAGTG	3 cut(s)	108, 129, 313
BveI	ACCTGC	1 cut(s)	233
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	271, 434
CseI	GACGC	1 cut(s)	348
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	9 cut(s)	5, 10, 39, 44, 188, 332, 392, 416, 435
CviKI_1	RGCY	9 cut(s)	5, 10, 39, 44, 188, 332, 392, 416, 435
DpnI	GATC	3 cut(s)	50, 278, 305
DpnII	GATC	3 cut(s)	48, 276, 303
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco24I	GRGCYC	2 cut(s)	12, 46
Eco47I	GGWCC	1 cut(s)	271
EcoO109I	RGGNCCY	2 cut(s)	271, 434
EcoT38I	GRGCYC	2 cut(s)	12, 46
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	1 cut(s)	38
FaiI	YATR	1 cut(s)	36
FatI	CATG	1 cut(s)	34
FauI	CCCGC	1 cut(s)	165
FblI	GTMKAC	2 cut(s)	228, 324
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	2 cut(s)	12, 46
Fsp4HI	GCNGC	1 cut(s)	357
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	357
GsaI	CCCAGC	2 cut(s)	9, 43
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	359
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HincII	GTYRAC	2 cut(s)	229, 325
HindII	GTYRAC	2 cut(s)	229, 325
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	3 cut(s)	229, 325, 409
Hpy188I	TCNGA	4 cut(s)	32, 48, 109, 364
Hpy8I	GTNNAC	3 cut(s)	229, 325, 409
Hpy99I	CGWCG	3 cut(s)	32, 329, 364
HpyAV	CCTTC	2 cut(s)	294, 425
HpyCH4V	TGCA	3 cut(s)	122, 134, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	359
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	3 cut(s)	48, 276, 303
LmnI	GCTCC	3 cut(s)	27, 49, 329
LpnPI	CCDG	5 cut(s)	25, 228, 287, 346, 451
LweI	GCATC	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	468
MalI	GATC	3 cut(s)	50, 278, 305
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	3 cut(s)	48, 276, 303
MboII	GAAGA	7 cut(s)	164, 263, 266, 269, 272, 303, 350
MhlI	GDGCHC	2 cut(s)	12, 46
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	2 cut(s)	10, 342
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	475
MslI	CAYNNNNRTG	2 cut(s)	194, 236
MspI	CCGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	432
NdeII	GATC	3 cut(s)	48, 276, 303
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	3 cut(s)	45, 331, 436
OliI	CACNNNNGTG	1 cut(s)	194
PaqCI	CACCTGC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	271
PspFI	CCCAGC	2 cut(s)	5, 39
PspN4I	GGNNCC	3 cut(s)	45, 331, 436
PspPI	GGNCC	2 cut(s)	271, 434
PspPPI	RGGWCCY	1 cut(s)	271
RseI	CAYNNNNRTG	2 cut(s)	194, 236
SalI	GTCGAC	2 cut(s)	227, 323
SaqAI	TTAA	1 cut(s)	475
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	3 cut(s)	48, 276, 303
Sau96I	GGNCC	2 cut(s)	271, 434
SchI	GAGTC	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	12, 46
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	194, 236
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	5 cut(s)	172, 182, 236, 282, 356
TaqI	TCGA	4 cut(s)	12, 207, 228, 324
TasI	AATT	1 cut(s)	76
TauI	GCSGC	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	475
Tru9I	TTAA	1 cut(s)	475
TscAI	CASTG	3 cut(s)	108, 129, 313
TspDTI	ATGAA	1 cut(s)	414
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	3 cut(s)	108, 129, 313
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	76
XmiI	GTMKAC	2 cut(s)	228, 324
XmnI	GAANNNNTTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.