RLG00000029574

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004887
Physical Location & Seq
Reverse (-)
40634894 .. 40635509
616 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029574

Sequence Viewer

Length: 459 bp
ATGGGAGAGAGTGAGAGCTCTCTAAACCCTAGCGTCGTCGTCGATGGGCGTCCGTTTTGGAGGCCTCCTTCGCCTCCTTTCCAGCGTCCGCTCAAGCGTACGAGTTCTCCTTGCTATGGCTGCAAGGCTTTCATCCTTCGATGGAACAATCTTCCAACGACGGCACGAGATCTGATTGGTTGGGTGTCTTGTGCTCTATGCCTTCGAGTCTGGGGCTTCCTGATGTTGTGGGATCCTGGCGGTACTCTGATCCGGGTGCAGCCGCTCCTAGCCGGCGAGTGGTGGAGGCGAGATCGGTCAACAAGCAGGCTGCTATGGGTGATGCGACGACGTCGATATCACGCTAGGTGGGCTGGGGCTGGGACGTCGACGCCACACATATGCTGCGCCAGACTTTTCCATGGGTCTGGATCTGGGACCCGGGTGGATCTTTGGCTACTTCTTTGTTATCTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.4

Weight (kDa)

10.72

Isoelectric Point (pI)

70.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 334, 368
AccBSI CCGCTC 2 cut(s) 91, 265
AccI GTMKAC 1 cut(s) 368
AciI CCGC 3 cut(s) 89, 240, 263
AclWI GGATC 5 cut(s) 227, 240, 244, 418, 435
AcyI GRCGYC 4 cut(s) 49, 331, 365, 371
AfaI GTAC 2 cut(s) 100, 244
AfiI CCNNNNNNNGG 2 cut(s) 116, 279
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw21I GWGCWC 2 cut(s) 20, 196
AlwI GGATC 5 cut(s) 227, 240, 244, 418, 435
Ama87I CYCGRG 1 cut(s) 420
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 4 cut(s) 120, 259, 310, 384
AspLEI GCGC 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 417
AsuC2I CCSGG 3 cut(s) 254, 421, 422
AsuHPI GGTGA 1 cut(s) 331
AvaI CYCGRG 1 cut(s) 420
AvaII GGWCC 1 cut(s) 417
BamHI GGATCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 20
BauI CACGAG 1 cut(s) 165
Bbv12I GWGCWC 2 cut(s) 20, 196
BbvI GCAGC 4 cut(s) 107, 271, 297, 371
BccI CCATC 2 cut(s) 38, 135
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 3 cut(s) 254, 421, 422
BfaI CTAG 3 cut(s) 30, 269, 345
BglII AGATCT 1 cut(s) 169
BisI GCNGC 5 cut(s) 121, 260, 263, 311, 385
BlsI GCNGC 5 cut(s) 122, 261, 264, 312, 386
Bme1390I CCNGG 4 cut(s) 237, 254, 421, 422
Bme18I GGWCC 1 cut(s) 417
BmeT110I CYCGRG 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 417
BmiI GGNNCC 3 cut(s) 234, 418, 419
BmrFI CCNGG 4 cut(s) 237, 254, 421, 422
BmsI GCATC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 3 cut(s) 254, 421, 422
BsaHI GRCGYC 4 cut(s) 49, 331, 365, 371
BsaJI CCNNGG 2 cut(s) 400, 420
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 279
Bse118I RCCGGY 1 cut(s) 272
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 400, 420
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 116, 279
BseXI GCAGC 4 cut(s) 107, 271, 297, 371
BseYI CCCAGC 2 cut(s) 353, 359
BsgI GTGCAG 1 cut(s) 278
BshFI GGCC 1 cut(s) 64
BsiHKAI GWGCWC 2 cut(s) 20, 196
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 3 cut(s) 253, 273, 421
BsiWI CGTACG 1 cut(s) 98
BslFI GGGAC 2 cut(s) 376, 430
BslI CCNNNNNNNGG 2 cut(s) 116, 279
BsmFI GGGAC 2 cut(s) 376, 430
BsnI GGCC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 420
Bsp1286I GDGCHC 2 cut(s) 20, 196
Bsp143I GATC 6 cut(s) 169, 232, 249, 292, 410, 427
Bsp19I CCATGG 1 cut(s) 400
BspACI CCGC 3 cut(s) 89, 240, 263
BspANI GGCC 1 cut(s) 64
BspLI GGNNCC 3 cut(s) 234, 418, 419
BspPI GGATC 5 cut(s) 227, 240, 244, 418, 435
BsrBI CCGCTC 2 cut(s) 91, 265
BsrFI RCCGGY 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 400, 420
BssMI GATC 6 cut(s) 169, 232, 249, 292, 410, 427
BssNI GRCGYC 4 cut(s) 49, 331, 365, 371
BssSI CACGAG 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 237
BstACI GRCGYC 4 cut(s) 49, 331, 365, 371
BstC8I GCNNGC 2 cut(s) 274, 308
BstDSI CCRYGG 1 cut(s) 400
BstF5I GGATG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 6 cut(s) 172, 235, 252, 295, 413, 430
BstMBI GATC 6 cut(s) 169, 232, 249, 292, 410, 427
BstMWI GCNNNNNNNGC 3 cut(s) 70, 120, 350
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 4 cut(s) 235, 252, 419, 420
BstV1I GCAGC 4 cut(s) 107, 271, 297, 371
BstX2I RGATCY 4 cut(s) 169, 232, 410, 427
BstXI CCANNNNNNTGG 1 cut(s) 407
BstYI RGATCY 4 cut(s) 169, 232, 410, 427
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 400
BtsCI GGATG 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 274, 308
CfoI GCGC 1 cut(s) 389
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 417
Cfr9I CCCGGG 1 cut(s) 420
CseI GACGC 4 cut(s) 22, 38, 74, 379
Csp6I GTAC 2 cut(s) 99, 243
CviAII CATG 1 cut(s) 401
CviQI GTAC 2 cut(s) 99, 243
DpnI GATC 6 cut(s) 171, 234, 251, 294, 412, 429
DpnII GATC 6 cut(s) 169, 232, 249, 292, 410, 427
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 400
Eco147I AGGCCT 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 20
Eco32I GATATC 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 235
EcoRV GATATC 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 1 cut(s) 404
FaiI YATR 6 cut(s) 117, 199, 316, 380, 382, 402
FaqI GGGAC 2 cut(s) 376, 430
FatI CATG 1 cut(s) 400
FauNDI CATATG 1 cut(s) 380
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 5 cut(s) 121, 260, 263, 311, 385
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 5 cut(s) 121, 260, 263, 311, 385
FspBI CTAG 3 cut(s) 30, 269, 345
GlaI GCGC 1 cut(s) 388
GluI GCNGC 5 cut(s) 121, 260, 263, 311, 385
GsaI CCCAGC 2 cut(s) 357, 363
HaeIII GGCC 1 cut(s) 64
HapII CCGG 3 cut(s) 253, 273, 421
HgaI GACGC 4 cut(s) 22, 38, 74, 379
HhaI GCGC 1 cut(s) 389
Hin1I GRCGYC 4 cut(s) 49, 331, 365, 371
Hin1II CATG 1 cut(s) 404
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HincII GTYRAC 2 cut(s) 300, 369
HindII GTYRAC 2 cut(s) 300, 369
HinfI GANTC 1 cut(s) 207
HpaII CCGG 3 cut(s) 253, 273, 421
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 2 cut(s) 300, 369
Hpy188I TCNGA 2 cut(s) 174, 249
Hpy188III TCNNGA 2 cut(s) 220, 408
Hpy8I GTNNAC 2 cut(s) 300, 369
Hpy99I CGWCG 9 cut(s) 38, 41, 44, 163, 330, 333, 336, 370, 373
HpyAV CCTTC 3 cut(s) 78, 146, 212
HpyCH4IV ACGT 2 cut(s) 331, 365
HpyCH4V TGCA 2 cut(s) 123, 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 120, 350
HpySE526I ACGT 2 cut(s) 331, 365
Hsp92I GRCGYC 4 cut(s) 49, 331, 365, 371
Hsp92II CATG 1 cut(s) 404
HspAI GCGC 1 cut(s) 387
KflI GGGWCCC 1 cut(s) 417
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
Kzo9I GATC 6 cut(s) 169, 232, 249, 292, 410, 427
LmnI GCTCC 1 cut(s) 270
Lsp1109I GCAGC 4 cut(s) 107, 271, 297, 371
LweI GCATC 1 cut(s) 312
MaeI CTAG 3 cut(s) 30, 269, 345
MaeII ACGT 2 cut(s) 331, 365
MalI GATC 6 cut(s) 171, 234, 251, 294, 412, 429
MbiI CCGCTC 2 cut(s) 91, 265
MboI GATC 6 cut(s) 169, 232, 249, 292, 410, 427
MboII GAAGA 1 cut(s) 143
MflI RGATCY 4 cut(s) 169, 232, 410, 427
MhlI GDGCHC 2 cut(s) 20, 196
MlyI GAGTC 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 4 cut(s) 54, 75, 84, 279
MroNI GCCGGC 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 379
MspI CCGG 3 cut(s) 253, 273, 421
MspR9I CCNGG 4 cut(s) 237, 254, 421, 422
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 3 cut(s) 70, 120, 350
NaeI GCCGGC 1 cut(s) 274
NciI CCSGG 3 cut(s) 254, 421, 422
NcoI CCATGG 1 cut(s) 400
NdeI CATATG 1 cut(s) 380
NdeII GATC 6 cut(s) 169, 232, 249, 292, 410, 427
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 1 cut(s) 404
NlaIV GGNNCC 3 cut(s) 234, 418, 419
PceI AGGCCT 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 274
Pfl23II CGTACG 1 cut(s) 98
PflFI GACNNNGTC 1 cut(s) 330
PkrI GCNGC 5 cut(s) 122, 261, 264, 312, 386
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PpuMI RGGWCCY 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 235
PspFI CCCAGC 2 cut(s) 353, 359
PspGI CCWGG 1 cut(s) 235
PspLI CGTACG 1 cut(s) 98
PspN4I GGNNCC 3 cut(s) 234, 418, 419
PspPI GGNCC 1 cut(s) 417
PspPPI RGGWCCY 1 cut(s) 417
PsuI RGATCY 4 cut(s) 169, 232, 410, 427
PsyI GACNNNGTC 1 cut(s) 330
RsaI GTAC 2 cut(s) 100, 244
RsaNI GTAC 2 cut(s) 99, 243
RseI CAYNNNNRTG 1 cut(s) 379
SacI GAGCTC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 367
SatI GCNGC 5 cut(s) 121, 260, 263, 311, 385
Sau3AI GATC 6 cut(s) 169, 232, 249, 292, 410, 427
Sau96I GGNCC 1 cut(s) 417
SchI GAGTC 1 cut(s) 216
ScrFI CCNGG 4 cut(s) 237, 254, 421, 422
SduI GDGCHC 2 cut(s) 20, 196
SetI ASST 4 cut(s) 20, 334, 350, 368
SfaNI GCATC 1 cut(s) 312
SgrDI CGTCGACG 1 cut(s) 367
SinI GGWCC 1 cut(s) 417
SmaI CCCGGG 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 379
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 64
SsiI CCGC 3 cut(s) 89, 240, 263
SspMI CTAG 3 cut(s) 30, 269, 345
SstI GAGCTC 1 cut(s) 20
StuI AGGCCT 1 cut(s) 64
StyD4I CCNGG 4 cut(s) 235, 252, 419, 420
StyI CCWWGG 1 cut(s) 400
TaiI ACGT 2 cut(s) 334, 368
TaqI TCGA 5 cut(s) 42, 139, 205, 334, 368
TaqII GACCGA 1 cut(s) 285
TauI GCSGC 1 cut(s) 265
TseI GCWGC 4 cut(s) 120, 259, 310, 384
TspDTI ATGAA 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 42
TspMI CCCGGG 1 cut(s) 420
Tth111I GACNNNGTC 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 417
XmaI CCCGGG 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 3 cut(s) 30, 269, 345
ZraI GACGTC 2 cut(s) 332, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.