Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Reverse (-)

56162074 .. 56164716

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCTTCACTGTTGGCTCTCTCGGGATTTAAGGTTTTGGAACCAAAAGAAGACGTTTTTGTCCTCGATCGGCCCAAACTGCTTCGGACCGAGGCGGATCTCTTGAATCGCTCGGGAGTTGGACGCTTAAAGCCCTTATCATACGAAGGCATCTCCGCCTCTCCCTCCTTCCGCTCTTTTATCCGATTCGAGAATATCACCTTACGGAGGAGCGAGGCTGCTGTTGACAAGAAACAATGTAATGGGTTGATACAAGTTATCATTTTTGAAGCCGCGGATCGGAGTAATATCGGTGGTTCTGCTTATGGGGGACGAGAGATCTATATGTTGCACCCCGATCTTGCTATGATGGAAGGTTGTAAGCAAGCTCGTGATCCAAAGCTGAAGGAACTTGTAATGAGCGGGAAGACGGTATGGAAAAGCCCCGATGGTTATCTACCTGGTCGAATGGCTCCACCGATGAAATTTTACGTGTATATGGCACTTGCTTATGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0031985 GO:0032580 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

166

Amino Acids

18.55

Weight (kDa)

9.37

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccBSI	CCGCTC	2 cut(s)	174, 402
AccII	CGCG	1 cut(s)	275
AciI	CCGC	6 cut(s)	95, 156, 172, 273, 275, 402
AclWI	GGATC	3 cut(s)	105, 285, 368
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	404
AfiI	CCNNNNNNNGG	2 cut(s)	207, 279
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	2 cut(s)	106, 269
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	2 cut(s)	368, 382
AluI	AGCT	2 cut(s)	368, 382
AlwI	GGATC	3 cut(s)	105, 285, 368
Ama87I	CYCGRG	2 cut(s)	22, 112
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	464
AspS9I	GGNCC	2 cut(s)	72, 87
AsuHPI	GGTGA	1 cut(s)	190
AvaI	CYCGRG	2 cut(s)	22, 112
AvaII	GGWCC	1 cut(s)	87
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	57, 413
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	2 cut(s)	343, 422
BciT130I	CCWGG	1 cut(s)	441
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	2 cut(s)	219, 273
BlsI	GCNGC	2 cut(s)	220, 274
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	87
BmeT110I	CYCGRG	2 cut(s)	22, 112
BmgT120I	GGNCC	2 cut(s)	72, 87
BmiI	GGNNCC	2 cut(s)	42, 453
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	1 cut(s)	159
BpiI	GAAGAC	2 cut(s)	57, 413
BsaAI	YACGTR	1 cut(s)	472
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	90, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 279
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	90, 273
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	207, 279
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	73
BsiEI	CGRYCG	1 cut(s)	70
BsiHKCI	CYCGRG	2 cut(s)	22, 112
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	207, 279
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	73
BsoBI	CYCGRG	2 cut(s)	22, 112
Bsp143I	GATC	6 cut(s)	67, 97, 277, 318, 337, 373
BspACI	CCGC	6 cut(s)	95, 156, 172, 273, 275, 402
BspANI	GGCC	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	2 cut(s)	42, 453
BspPI	GGATC	3 cut(s)	105, 285, 368
BsrBI	CCGCTC	2 cut(s)	174, 402
BssECI	CCNNGG	2 cut(s)	90, 273
BssMI	GATC	6 cut(s)	67, 97, 277, 318, 337, 373
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	12, 412
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	366
BstDSI	CCRYGG	1 cut(s)	273
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	6 cut(s)	70, 100, 280, 321, 340, 376
BstMBI	GATC	6 cut(s)	67, 97, 277, 318, 337, 373
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	439
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	205
BstV2I	GAAGAC	2 cut(s)	57, 413
BstX2I	RGATCY	2 cut(s)	97, 318
BstYI	RGATCY	2 cut(s)	97, 318
BsuRI	GGCC	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	72, 87
Cfr42I	CCGCGG	1 cut(s)	276
CpoI	CGGWCCG	1 cut(s)	87
CseI	GACGC	1 cut(s)	132
CsiI	ACCWGGT	1 cut(s)	439
CspI	CGGWCCG	1 cut(s)	87
CviJI	RGCY	9 cut(s)	17, 73, 133, 218, 272, 368, 382, 423, 452
CviKI_1	RGCY	9 cut(s)	17, 73, 133, 218, 272, 368, 382, 423, 452
DpnI	GATC	6 cut(s)	69, 99, 279, 320, 339, 375
DpnII	GATC	6 cut(s)	67, 97, 277, 318, 337, 373
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EciI	GGCGGA	2 cut(s)	110, 145
Eco47I	GGWCC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	404
Eco88I	CYCGRG	2 cut(s)	22, 112
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	439
FaiI	YATR	9 cut(s)	142, 306, 324, 326, 347, 415, 477, 479, 492
FaqI	GGGAC	1 cut(s)	324
FauI	CCCGC	1 cut(s)	395
Fnu4HI	GCNGC	2 cut(s)	219, 273
Fsp4HI	GCNGC	2 cut(s)	219, 273
GluI	GCNGC	2 cut(s)	219, 273
HaeIII	GGCC	1 cut(s)	73
HgaI	GACGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	106, 186
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	87, 185, 282
Hpy188III	TCNNGA	5 cut(s)	24, 103, 114, 190, 371
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	5 cut(s)	15, 140, 178, 347, 379
HpyCH4III	ACNGT	2 cut(s)	12, 412
HpyCH4IV	ACGT	2 cut(s)	54, 471
HpyCH4V	TGCA	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpySE526I	ACGT	2 cut(s)	54, 471
KspI	CCGCGG	1 cut(s)	276
Kzo9I	GATC	6 cut(s)	67, 97, 277, 318, 337, 373
LmnI	GCTCC	2 cut(s)	210, 457
LpnPI	CCDG	2 cut(s)	426, 453
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	159
MabI	ACCWGGT	1 cut(s)	439
MaeII	ACGT	2 cut(s)	54, 471
MalI	GATC	6 cut(s)	69, 99, 279, 320, 339, 375
MbiI	CCGCTC	2 cut(s)	174, 402
MboI	GATC	6 cut(s)	67, 97, 277, 318, 337, 373
MboII	GAAGA	2 cut(s)	62, 418
MflI	RGATCY	2 cut(s)	97, 318
MluCI	AATT	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	6 cut(s)	74, 85, 169, 175, 201, 208
MseI	TTAA	2 cut(s)	30, 128
MspA1I	CMGCKG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	79
NdeII	GATC	6 cut(s)	67, 97, 277, 318, 337, 373
NlaIV	GGNNCC	2 cut(s)	42, 453
PfeI	GAWTC	2 cut(s)	106, 186
PkrI	GCNGC	2 cut(s)	220, 274
Ple19I	CGATCG	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	42, 453
PspPI	GGNCC	2 cut(s)	72, 87
PsuI	RGATCY	2 cut(s)	97, 318
PvuI	CGATCG	1 cut(s)	70
Rsr2I	CGGWCCG	1 cut(s)	87
RsrII	CGGWCCG	1 cut(s)	87
SacII	CCGCGG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	30, 128
SatI	GCNGC	2 cut(s)	219, 273
Sau3AI	GATC	6 cut(s)	67, 97, 277, 318, 337, 373
Sau96I	GGNCC	2 cut(s)	72, 87
ScrFI	CCNGG	1 cut(s)	441
SetI	ASST	8 cut(s)	36, 57, 203, 358, 370, 384, 442, 474
SexAI	ACCWGGT	1 cut(s)	439
SfaNI	GCATC	1 cut(s)	159
Sfr303I	CCGCGG	1 cut(s)	276
SgrBI	CCGCGG	1 cut(s)	276
SinI	GGWCC	1 cut(s)	87
Sse9I	AATT	1 cut(s)	464
SsiI	CCGC	6 cut(s)	95, 156, 172, 273, 275, 402
StyD4I	CCNGG	1 cut(s)	439
TaaI	ACNGT	2 cut(s)	12, 412
TaiI	ACGT	2 cut(s)	57, 474
TaqI	TCGA	3 cut(s)	66, 189, 445
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	1 cut(s)	464
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	2 cut(s)	106, 186
Tru1I	TTAA	2 cut(s)	30, 128
Tru9I	TTAA	2 cut(s)	30, 128
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	476
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	87
XagI	CCTNNNNNAGG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.