RLG00000014056

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004887
Physical Location & Seq
Reverse (-)
46245444 .. 46245854
411 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014056

Sequence Viewer

Length: 312 bp
ATGGGAGAGAGTGAGAGCTCTCTAAACCCTAGCGCCGTCGTCTATGGGAGTCCCTTTTGGAGGCCTCCTTCGCCTCCTTTCCAGCATCCGCTCAAGCGTATGAGTTCTCCTTGCTATGGCTGCAAGGCTTTCATCCTTCGATGGAACAATCTTCCAACGACGCCGCTCCTAGCTGGCGAGTGGTGGAGGCGAGATCGGTCAACAAGCAGGCTGTTATGGGTGATGCGACGACGTCGATATCACGCTAGGCTGGTTTCTGCTTTCTTGCACGGTGGTGGCTGGGTTCTTACTTGGTGGTTGATTCTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

12.13

Weight (kDa)

11.36

Isoelectric Point (pI)

89.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 235
AccBSI CCGCTC 2 cut(s) 91, 166
AciI CCGC 2 cut(s) 89, 164
AcyI GRCGYC 2 cut(s) 161, 232
AfiI CCNNNNNNNGG 2 cut(s) 60, 116
AleI CACNNNNGTG 1 cut(s) 273
AluBI AGCT 2 cut(s) 18, 173
AluI AGCT 2 cut(s) 18, 173
Alw21I GWGCWC 1 cut(s) 20
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 232
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 107
BccI CCATC 1 cut(s) 135
BceAI ACGGC 1 cut(s) 20
BfaI CTAG 3 cut(s) 30, 170, 246
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 2 cut(s) 121, 164
BlsI GCNGC 2 cut(s) 122, 165
BmsI GCATC 2 cut(s) 94, 213
BpuEI CTTGAG 1 cut(s) 77
BsaHI GRCGYC 2 cut(s) 161, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 116
BseGI GGATG 2 cut(s) 85, 132
BseLI CCNNNNNNNGG 2 cut(s) 60, 116
BseXI GCAGC 1 cut(s) 107
BseYI CCCAGC 1 cut(s) 279
BshFI GGCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 20
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 60, 116
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 2 cut(s) 89, 164
BspANI GGCC 1 cut(s) 64
BsrBI CCGCTC 2 cut(s) 91, 166
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 2 cut(s) 161, 232
Bst4CI ACNGT 1 cut(s) 272
BstACI GRCGYC 2 cut(s) 161, 232
BstC8I GCNNGC 2 cut(s) 175, 209
BstENI CCTNNNNNAGG 1 cut(s) 58
BstF5I GGATG 2 cut(s) 85, 132
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 70, 120
BstV1I GCAGC 1 cut(s) 107
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 85, 132
Cac8I GCNNGC 2 cut(s) 175, 209
CfoI GCGC 1 cut(s) 35
CseI GACGC 1 cut(s) 169
CviJI RGCY 8 cut(s) 18, 64, 120, 128, 173, 211, 250, 279
CviKI_1 RGCY 8 cut(s) 18, 64, 120, 128, 173, 211, 250, 279
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 20
Eco32I GATATC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 58
EcoRV GATATC 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 20
FaiI YATR 4 cut(s) 45, 101, 117, 217
FaqI GGGAC 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 121, 164
FokI GGATG 2 cut(s) 72, 119
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 121, 164
FspBI CTAG 3 cut(s) 30, 170, 246
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 121, 164
GsaI CCCAGC 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 1 cut(s) 64
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 35
Hin1I GRCGYC 2 cut(s) 161, 232
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HinfI GANTC 2 cut(s) 49, 301
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 201
Hpy99I CGWCG 5 cut(s) 41, 163, 231, 234, 237
HpyAV CCTTC 2 cut(s) 78, 146
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 123, 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 120
HpySE526I ACGT 1 cut(s) 232
Hsp92I GRCGYC 2 cut(s) 161, 232
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 5 cut(s) 95, 159, 193, 236, 265
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 2 cut(s) 94, 213
MaeI CTAG 3 cut(s) 30, 170, 246
MaeII ACGT 1 cut(s) 232
MalI GATC 1 cut(s) 195
MbiI CCGCTC 2 cut(s) 91, 166
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 20
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 4 cut(s) 54, 75, 84, 180
MslI CAYNNNNRTG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 70, 120
NdeII GATC 1 cut(s) 193
OliI CACNNNNGTG 1 cut(s) 273
PceI AGGCCT 1 cut(s) 64
PfeI GAWTC 1 cut(s) 301
PflFI GACNNNGTC 1 cut(s) 231
PkrI GCNGC 2 cut(s) 122, 165
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 20
SatI GCNGC 2 cut(s) 121, 164
Sau3AI GATC 1 cut(s) 193
SchI GAGTC 1 cut(s) 58
SduI GDGCHC 1 cut(s) 20
SetI ASST 3 cut(s) 20, 175, 235
SfaNI GCATC 2 cut(s) 94, 213
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 64
SsiI CCGC 2 cut(s) 89, 164
SspMI CTAG 3 cut(s) 30, 170, 246
SstI GAGCTC 1 cut(s) 20
StuI AGGCCT 1 cut(s) 64
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 235
TaqI TCGA 2 cut(s) 139, 235
TaqII GACCGA 1 cut(s) 186
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 1 cut(s) 301
TseI GCWGC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 121
Tth111I GACNNNGTC 1 cut(s) 231
XagI CCTNNNNNAGG 1 cut(s) 58
XspI CTAG 3 cut(s) 30, 170, 246
ZraI GACGTC 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.