Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004887

Physical Location & Seq

Genomic Coordinates Forward (+)

38793585 .. 38794163

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00358680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATTCTCTCTGTCTCCACTCAAATAAGCATCTCTCTCTTTCTCAAGTCCTCATTGCAGAACCAACTTCCCAATACCACAAAACCAAGCTCCACCATTACCACCACAACTCACGAGCAGAAAAGGTCCGACGAAGCAGCGGAAGACCGGACGAAGCTACAAGACCGGACGAGCGACAGAGGAACTCCGAGCAGCAACCCGAAGAAGACCGGGTTTGGGTCCGCTTCTTCTCGCTATTTTTCTTCTCTCTCTCGATTCGGGTCGGTCGACTTGCAAAGAAGACCGGACGAGAATCAAATGAACCGAAGAAGACCAGCAACCGAAGCGGCGACCGCAACTGGATCTGTCCGATTGCGATTTTTCTTCTCTCCCTCTCTATCTAGAAAGCAGGAAGTTGAGCGGCTTCGTGCGGAAAGGAATGCAGTGGCAAACAAGATGAAGGGGAAGTTGGAACCCTCCGAGCGTCAAAAACTCATAGAGGAAGGTAAGAATATGAAGGAAGGCCTTCTTACATTGGAAGAAGACCTGCTTAAGCTTACCGATGAGCTCCAACAGAAGCACAATGTATACCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004828 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006091 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009987 GO:0010467 GO:0015980 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031974 GO:0032502 GO:0032543 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032990 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0048856 GO:0048869 GO:0055114 GO:0070013 GO:0070127 GO:0070158 GO:0070584 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140053 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

192

Amino Acids

21.75

Weight (kDa)

9.93

Isoelectric Point (pI)

61.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Seryl_tRNA_N	PF02403	129 - 186	4.7e-07	Seryl-tRNA synthetase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004887)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0259601
rosa_laevigata	RLG00000003103 RLG00000005636 RLG00000007694 RLG00000010541 RLG00000011298 RLG00000013218 RLG00000014056 RLG00000018752 RLG00000018929 RLG00000022584 RLG00000024077 RLG00000029574 RLG00000031864 RLG00000032289
rosa_multiflora	Rmu_sc0000882.1_g000011 Rmu_sc0003596.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027440 Rroxscaffold_2G00124900 Rroxscaffold_2G00132880 Rroxscaffold_3G00227750 Rroxscaffold_5G00355680 Rroxscaffold_5G00358680 Rroxscaffold_6G00415500 Rroxscaffold_7G00201640 Rroxscaffold_7G00206380 Rroxscaffold_7G00206390
rosa_samantha	Rh1DG184900 Rh2CG167000 Rh7DG366000
rosa_wichuraiana	Rw1G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	534
AccBSI	CCGCTC	1 cut(s)	400
AccI	GTMKAC	2 cut(s)	267, 567
AciI	CCGC	6 cut(s)	140, 222, 326, 333, 400, 410
AclWI	GGATC	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflII	CTTAAG	1 cut(s)	530
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AluBI	AGCT	4 cut(s)	90, 157, 535, 547
AluI	AGCT	4 cut(s)	90, 157, 535, 547
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	2 cut(s)	137, 192
Asp700I	GAANNNNTTC	1 cut(s)	504
AspS9I	GGNCC	2 cut(s)	126, 219
AsuC2I	CCSGG	1 cut(s)	211
AvaII	GGWCC	2 cut(s)	126, 219
BanII	GRGCYC	1 cut(s)	549
BauI	CACGAG	1 cut(s)	113
BbsI	GAAGAC	5 cut(s)	150, 212, 286, 316, 528
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	2 cut(s)	149, 204
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	381
BfrI	CTTAAG	1 cut(s)	530
BfuAI	ACCTGC	1 cut(s)	534
BisI	GCNGC	4 cut(s)	138, 193, 327, 401
BlsI	GCNGC	4 cut(s)	139, 194, 328, 402
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	2 cut(s)	126, 219
BmgT120I	GGNCC	2 cut(s)	126, 219
BmiI	GGNNCC	2 cut(s)	220, 453
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	39
BpiI	GAAGAC	5 cut(s)	150, 212, 286, 316, 528
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	211
BsaWI	WCCGGW	3 cut(s)	147, 165, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	343
BseXI	GCAGC	2 cut(s)	149, 204
Bsh1285I	CGRYCG	2 cut(s)	267, 333
BshFI	GGCC	1 cut(s)	504
BsiEI	CGRYCG	2 cut(s)	267, 333
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	4 cut(s)	148, 166, 210, 284
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	1 cut(s)	341
BspACI	CCGC	6 cut(s)	140, 222, 326, 333, 400, 410
BspANI	GGCC	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	220, 453
BspMI	ACCTGC	1 cut(s)	534
BspPI	GGATC	1 cut(s)	349
BspTI	CTTAAG	1 cut(s)	530
BsrBI	CCGCTC	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	343
BssMI	GATC	1 cut(s)	341
BssNAI	GTATAC	1 cut(s)	568
BssSI	CACGAG	1 cut(s)	113
Bst1107I	GTATAC	1 cut(s)	568
Bst2BI	CACGAG	1 cut(s)	113
BstAFI	CTTAAG	1 cut(s)	530
BstKTI	GATC	1 cut(s)	344
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	341
BstMCI	CGRYCG	2 cut(s)	267, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 332
BstSCI	CCNGG	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	149, 204
BstV2I	GAAGAC	5 cut(s)	150, 212, 286, 316, 528
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BstZ17I	GTATAC	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	504
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	429
BveI	ACCTGC	1 cut(s)	534
Cfr13I	GGNCC	2 cut(s)	126, 219
CseI	GACGC	1 cut(s)	452
CviJI	RGCY	6 cut(s)	90, 157, 403, 504, 535, 547
CviKI_1	RGCY	6 cut(s)	90, 157, 403, 504, 535, 547
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	547
Eco147I	AGGCCT	1 cut(s)	504
Eco24I	GRGCYC	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	126, 219
Eco53kI	GAGCTC	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	549
FaiI	YATR	4 cut(s)	476, 494, 568, 577
FalI	AAGNNNNNCTT	4 cut(s)	492, 524, 513, 545
FblI	GTMKAC	2 cut(s)	267, 567
Fnu4HI	GCNGC	4 cut(s)	138, 193, 327, 401
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	4 cut(s)	138, 193, 327, 401
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	4 cut(s)	138, 193, 327, 401
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	4 cut(s)	148, 166, 210, 284
HgaI	GACGC	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	3 cut(s)	4, 255, 292
HpaII	CCGG	4 cut(s)	148, 166, 210, 284
Hpy166II	GTNNAC	2 cut(s)	268, 568
Hpy188I	TCNGA	4 cut(s)	130, 189, 350, 460
Hpy188III	TCNNGA	3 cut(s)	113, 252, 381
Hpy8I	GTNNAC	2 cut(s)	268, 568
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	5 cut(s)	433, 476, 490, 494, 515
HpyCH4V	TGCA	3 cut(s)	58, 274, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 332
Kzo9I	GATC	1 cut(s)	341
LmnI	GCTCC	2 cut(s)	95, 552
LpnPI	CCDG	8 cut(s)	161, 179, 223, 297, 324, 327, 374, 539
Lsp1109I	GCAGC	2 cut(s)	149, 204
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	381
MalI	GATC	1 cut(s)	343
MbiI	CCGCTC	1 cut(s)	400
MboI	GATC	1 cut(s)	341
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	549
MmeI	TCCRAC	3 cut(s)	153, 429, 574
MnlI	CCTC	5 cut(s)	61, 173, 382, 466, 472
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	4 cut(s)	148, 166, 210, 284
MspR9I	CCNGG	1 cut(s)	211
Mva1269I	GAATGC	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	323, 332
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	341
NlaIV	GGNNCC	2 cut(s)	220, 453
PceI	AGGCCT	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PctI	GAATGC	1 cut(s)	424
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	3 cut(s)	4, 255, 292
PkrI	GCNGC	4 cut(s)	139, 194, 328, 402
Psp124BI	GAGCTC	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	220, 453
PspPI	GGNCC	2 cut(s)	126, 219
PsuI	RGATCY	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	549
SalI	GTCGAC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	4 cut(s)	138, 193, 327, 401
Sau3AI	GATC	1 cut(s)	341
Sau96I	GGNCC	2 cut(s)	126, 219
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	549
SetI	ASST	7 cut(s)	92, 128, 159, 487, 528, 537, 549
SfaNI	GCATC	1 cut(s)	39
SinI	GGWCC	2 cut(s)	126, 219
SmlI	CTYRAG	2 cut(s)	44, 530
SmoI	CTYRAG	2 cut(s)	44, 530
SseBI	AGGCCT	1 cut(s)	504
SsiI	CCGC	6 cut(s)	140, 222, 326, 333, 400, 410
SspMI	CTAG	1 cut(s)	381
SstI	GAGCTC	1 cut(s)	549
StuI	AGGCCT	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	209
TaqI	TCGA	2 cut(s)	253, 267
TaqII	GACCGA	1 cut(s)	253
TauI	GCSGC	2 cut(s)	329, 403
TfiI	GAWTC	3 cut(s)	4, 255, 292
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	2 cut(s)	137, 192
TspDTI	ATGAA	3 cut(s)	314, 452, 509
TspRI	CASTG	1 cut(s)	429
Vha464I	CTTAAG	1 cut(s)	530
VpaK11BI	GGWCC	2 cut(s)	126, 219
XbaI	TCTAGA	1 cut(s)	380
XmiI	GTMKAC	2 cut(s)	267, 567
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.