Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000078.1

Orthogroup ID

OG0002248

Physical Location & Seq

Genomic Coordinates Reverse (-)

160493 .. 163624

Gene Structure 3132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgagtttgcttggtggttctgtaccaggagtacccatcttgtggcctaatgctgaaagtgatgatgatattactccattgttgtcatctgtggcagctggttcactggcatgcttggagttattgattcaggttcactttcgtgccaaagtaaatatgagtgctggtggagcgactcctttacacattgctgctgatattgggaacttggagattataaaatgtttgttaaaagctggagctgatcccaatgtaactgatgaggagggtttgaagccaatacaggttgcagctgcaagtgggaaccgaagcgctgtggagatcctctttcccttgacatcacaagttgaaaccatttcaaaatggacagttgatggcatacttgagtatatgcagtctgaaacaagcagactacaggaacaaccgcgaaatactaaggaacttaatgtcccaaaagactctacttcactgaagaaagagctccctgaggtgacacctgaggcaaagaaaagagctgcagaagcaaaattgagaggaggcgatgctttcagtagaaaggattatcaagcggctgttgatgcatacacgcaggcaattgatttggacccaactgatgccatttttctttccaatcgaagcctttgttggcttcgtcttggccaagctgaacatgccttagctgatgcaaaggcctgcagggaattgaaaccggattggccaaaggcttgctttcgagaaggtgcagcattgcgcctaatgcagaagtttgatgaagcagccaattgtttttatgagggcgtgcagctcgaccctgaaagtaaagaactcgtcgatgctttcagggaagcggttgaagctggaaggcagttccacagtaaagataaacaaaaaccaaaaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4 Ank_5 DUF1685 TPR_17 TPR_8

Protein Analysis

300

Amino Acids

32.7

Weight (kDa)

5.24

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	19 - 87	5e-11	Ankyrin repeats (3 copies)
Ank_2	PF12796	32 - 111	5.1e-12	Ankyrin repeats (3 copies)
Ank_5	PF13857	56 - 97	3.2e-08	Ankyrin repeats (many copies)
Ank	PF00023	57 - 87	2.1e-09	Ankyrin repeat
Ank_3	PF13606	57 - 85	2.1e-06	Ankyrin repeat
Ank_4	PF13637	68 - 109	3.2e-06	Ankyrin repeats (many copies)
TPR_BSK1_C	PF25575	169 - 244	3.3e-13	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04710 AT3G04710 AT3G04710
fragaria_vesca	FvH4_6g02680 FvH4_6g02680 FvH4_6g02680
malus_domestica	MD04G1226000.v1.1 MD12G1243100.v1.1
prunus_persica	Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1 Prupe.6G344800_v2.0.a1
pyrus_communis	pycom04g19920
rosa_chinensis	RchiOBHm_Chr3g0450651
rosa_laevigata	RLG00000009012 RLG00000015782 RLG00000021632 RLG00000025714 RLG00000028104 RLG00000030476 RLG00000032885 RLG00000033656 RLG00000035453
rosa_multiflora	Rmu_sc0000078.1_g000037 Rmu_sc0000078.1_g000039 Rmu_sc0000363.1_g000053 Rmu_sc0004087.1_g000001 Rmu_sc0004482.1_g000035 Rmu_ssc0000041.1_g000028
rosa_roxburghii	Rroxscaffold_6G00428310
rosa_rugosa	Rorug02G0629300
rosa_samantha	Rh3AG030000 Rh3BG030400 Rh3CG029300 Rh3DG030100 Rh3DG068700 Rh4BG215400 Rh4CG266900 Rh5AG295200 Rh6AG203900 Rh7DG321200
rosa_wichuraiana	Rw3G002310 Rw5G037800 Rw6G017710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	42
AccII	CGCG	1 cut(s)	427
AciI	CCGC	3 cut(s)	425, 569, 848
AclWI	GGATC	2 cut(s)	239, 316
AcoI	YGGCCR	2 cut(s)	658, 716
AcuI	CTGAAG	1 cut(s)	491
AfaI	GTAC	2 cut(s)	24, 33
AfeI	AGCGCT	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	5 cut(s)	274, 350, 360, 706, 854
AjnI	CCWGG	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	628, 660
AleI	CACNNNNGTG	1 cut(s)	141
AloI	GAACNNNNNNTCC	2 cut(s)	432, 464
Alw21I	GWGCWC	1 cut(s)	483
AlwI	GGATC	2 cut(s)	239, 316
Aor51HI	AGCGCT	1 cut(s)	313
AoxI	GGCC	4 cut(s)	44, 658, 690, 716
ApeKI	GCWGC	8 cut(s)	95, 191, 290, 293, 515, 743, 776, 802
AspLEI	GCGC	2 cut(s)	314, 753
AspS9I	GGNCC	1 cut(s)	604
AsuHPI	GGTGA	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	604
AxyI	CCTNAGG	2 cut(s)	486, 498
BalI	TGGCCA	2 cut(s)	660, 718
BanII	GRGCYC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	8 cut(s)	107, 178, 280, 302, 502, 755, 788, 814
BccI	CCATC	2 cut(s)	44, 368
BciT130I	CCWGG	1 cut(s)	27
BfmI	CTRYAG	3 cut(s)	413, 516, 694
BfoI	RGCGCY	1 cut(s)	315
BisI	GCNGC	9 cut(s)	96, 192, 291, 294, 516, 570, 744, 777, 803
BlsI	GCNGC	9 cut(s)	97, 193, 292, 295, 517, 571, 745, 778, 804
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	604
BmgT120I	GGNCC	1 cut(s)	604
BmiI	GGNNCC	2 cut(s)	305, 606
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	5 cut(s)	532, 568, 604, 673, 823
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	676
BpuEI	CTTGAG	1 cut(s)	404
BsaWI	WCCGGW	1 cut(s)	709
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	111
Bse21I	CCTNAGG	2 cut(s)	486, 498
Bse3DI	GCAATG	2 cut(s)	186, 746
BseBI	CCWGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMI	GCAATG	2 cut(s)	186, 746
BseMII	CTCAG	2 cut(s)	477, 489
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	2 cut(s)	278, 549
BseXI	GCAGC	8 cut(s)	107, 178, 280, 302, 502, 755, 788, 814
BsgI	GTGCAG	2 cut(s)	762, 821
Bsh1236I	CGCG	1 cut(s)	427
BshFI	GGCC	4 cut(s)	46, 660, 692, 718
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	710
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	4 cut(s)	46, 660, 692, 718
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	2 cut(s)	244, 321
BspACI	CCGC	3 cut(s)	425, 569, 848
BspANI	GGCC	4 cut(s)	46, 660, 692, 718
BspCNI	CTCAG	2 cut(s)	478, 490
BspFNI	CGCG	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	305, 606
BspMAI	CTGCAG	2 cut(s)	520, 698
BspPI	GGATC	2 cut(s)	239, 316
BsrDI	GCAATG	2 cut(s)	186, 746
BsrI	ACTGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	244, 321
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	370, 875
BstC8I	GCNNGC	5 cut(s)	112, 591, 694, 727, 800
BstDEI	CTNAG	5 cut(s)	435, 486, 498, 676, 900
BstFNI	CGCG	1 cut(s)	427
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	2 cut(s)	314, 753
BstKTI	GATC	2 cut(s)	247, 324
BstMBI	GATC	2 cut(s)	244, 321
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 521, 578, 671, 757, 854
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	2 cut(s)	114, 674
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	3 cut(s)	413, 516, 694
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	8 cut(s)	107, 178, 280, 302, 502, 755, 788, 814
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
Bsu36I	CCTNAGG	2 cut(s)	486, 498
BsuRI	GGCC	4 cut(s)	46, 660, 692, 718
BtgZI	GCGATG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	104, 467
Cac8I	GCNNGC	5 cut(s)	112, 591, 694, 727, 800
CfoI	GCGC	2 cut(s)	314, 753
Cfr13I	GGNCC	1 cut(s)	604
Csp6I	GTAC	2 cut(s)	23, 32
CviAII	CATG	2 cut(s)	111, 671
CviQI	GTAC	2 cut(s)	23, 32
DdeI	CTNAG	5 cut(s)	435, 486, 498, 676, 900
DpnI	GATC	2 cut(s)	246, 323
DpnII	GATC	2 cut(s)	244, 321
EaeI	YGGCCR	2 cut(s)	658, 716
Ecl136II	GAGCTC	1 cut(s)	481
Eco147I	AGGCCT	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	604
Eco47III	AGCGCT	1 cut(s)	313
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	491
Eco81I	CCTNAGG	2 cut(s)	486, 498
EcoICRI	GAGCTC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	483
FaeI	CATG	2 cut(s)	114, 674
FaiI	YATR	9 cut(s)	112, 158, 218, 380, 390, 392, 583, 672, 792
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	2 cut(s)	110, 670
Fnu4HI	GCNGC	9 cut(s)	96, 192, 291, 294, 516, 570, 744, 777, 803
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	9 cut(s)	96, 192, 291, 294, 516, 570, 744, 777, 803
GlaI	GCGC	2 cut(s)	313, 752
GluI	GCNGC	9 cut(s)	96, 192, 291, 294, 516, 570, 744, 777, 803
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	4 cut(s)	46, 660, 692, 718
HapII	CCGG	1 cut(s)	710
HhaI	GCGC	2 cut(s)	314, 753
Hin1II	CATG	2 cut(s)	114, 674
Hin6I	GCGC	2 cut(s)	312, 751
HinP1I	GCGC	2 cut(s)	312, 751
HinfI	GANTC	3 cut(s)	127, 175, 458
HpaII	CCGG	1 cut(s)	710
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	2 cut(s)	104, 136
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	1 cut(s)	734
Hpy8I	GTNNAC	2 cut(s)	104, 136
Hpy99I	CGWCG	1 cut(s)	833
HpyAV	CCTTC	2 cut(s)	731, 855
HpyCH4III	ACNGT	2 cut(s)	370, 875
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 521, 578, 671, 757, 854
HpyF3I	CTNAG	5 cut(s)	435, 486, 498, 676, 900
Hsp92II	CATG	2 cut(s)	114, 674
HspAI	GCGC	2 cut(s)	312, 751
Kzo9I	GATC	2 cut(s)	244, 321
LmnI	GCTCC	3 cut(s)	170, 239, 486
Lsp1109I	GCAGC	8 cut(s)	107, 178, 280, 302, 502, 755, 788, 814
LweI	GCATC	5 cut(s)	532, 568, 604, 673, 823
MaeIII	GTNAC	2 cut(s)	253, 490
MalI	GATC	2 cut(s)	246, 323
MboI	GATC	2 cut(s)	244, 321
MboII	GAAGA	1 cut(s)	484
MfeI	CAATTG	2 cut(s)	594, 781
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	483
MlsI	TGGCCA	2 cut(s)	660, 718
MluCI	AATT	4 cut(s)	527, 594, 701, 781
MluNI	TGGCCA	2 cut(s)	660, 718
MlyI	GAGTC	2 cut(s)	169, 452
MnlI	CCTC	8 cut(s)	256, 259, 335, 481, 493, 527, 530, 787
Mox20I	TGGCCA	2 cut(s)	660, 718
Mph1103I	ATGCAT	1 cut(s)	583
MscI	TGGCCA	2 cut(s)	660, 718
MseI	TTAA	2 cut(s)	230, 444
MslI	CAYNNNNRTG	2 cut(s)	109, 141
Msp20I	TGGCCA	2 cut(s)	660, 718
MspA1I	CMGCKG	2 cut(s)	98, 293
MspI	CCGG	1 cut(s)	710
MspR9I	CCNGG	1 cut(s)	27
MunI	CAATTG	2 cut(s)	594, 781
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	6 cut(s)	170, 521, 578, 671, 757, 854
NdeII	GATC	2 cut(s)	244, 321
NlaIII	CATG	2 cut(s)	114, 674
NlaIV	GGNNCC	2 cut(s)	305, 606
NmuCI	GTSAC	1 cut(s)	490
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	2 cut(s)	114, 674
OliI	CACNNNNGTG	1 cut(s)	141
PaeI	GCATGC	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	692
PfeI	GAWTC	1 cut(s)	127
PflMI	CCANNNNNTGG	1 cut(s)	42
PkrI	GCNGC	9 cut(s)	97, 193, 292, 295, 517, 571, 745, 778, 804
PleI	GAGTC	2 cut(s)	169, 452
PpsI	GAGTC	2 cut(s)	169, 452
PsiI	TTATAA	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	305, 606
PspPI	GGNCC	1 cut(s)	604
PstI	CTGCAG	2 cut(s)	520, 698
PsuI	RGATCY	1 cut(s)	321
PvuII	CAGCTG	2 cut(s)	98, 293
RsaI	GTAC	2 cut(s)	24, 33
RsaNI	GTAC	2 cut(s)	23, 32
RseI	CAYNNNNRTG	2 cut(s)	109, 141
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	230, 444
SatI	GCNGC	9 cut(s)	96, 192, 291, 294, 516, 570, 744, 777, 803
Sau3AI	GATC	2 cut(s)	244, 321
Sau96I	GGNCC	1 cut(s)	604
SbfI	CCTGCAGG	1 cut(s)	698
SchI	GAGTC	2 cut(s)	169, 452
ScrFI	CCNGG	1 cut(s)	27
SdaI	CCTGCAGG	1 cut(s)	698
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	5 cut(s)	532, 568, 604, 673, 823
SfcI	CTRYAG	3 cut(s)	413, 516, 694
SinI	GGWCC	1 cut(s)	604
SmiMI	CAYNNNNRTG	2 cut(s)	109, 141
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SphI	GCATGC	1 cut(s)	114
Sse8387I	CCTGCAGG	1 cut(s)	698
Sse9I	AATT	4 cut(s)	527, 594, 701, 781
SseBI	AGGCCT	1 cut(s)	692
SsiI	CCGC	3 cut(s)	425, 569, 848
SstI	GAGCTC	1 cut(s)	483
StuI	AGGCCT	1 cut(s)	692
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	370, 875
TaqI	TCGA	4 cut(s)	634, 733, 807, 831
TasI	AATT	4 cut(s)	527, 594, 701, 781
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	230, 444
Tru9I	TTAA	2 cut(s)	230, 444
TscAI	CASTG	2 cut(s)	111, 474
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	8 cut(s)	95, 191, 290, 293, 515, 743, 776, 802
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	1 cut(s)	786
TspRI	CASTG	2 cut(s)	111, 474
Van91I	CCANNNNNTGG	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	604
XceI	RCATGY	2 cut(s)	114, 674
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.