Rmu_sc0002119.1_g000006
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002119.1
OG0002549
Physical Location & Seq
Forward (+)
30338 .. 32898
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1689 bp
atgatgagctgcatcacacttcataaggatctccgattcctgccctccgacgaggagctggtgagtgattacttggagaagaagaatcagcagaaggatcccgaaagcaaggccatcatctctgtattcaatgtgtgcgagcacgggcctagcgacttagcagccctggtaccaagggtgaaatttctggacagggagtgggaattcaccgtggcggactctccggacatggagcggtacttctacagtccgcgagtttttaaacacaacaaaagcaaaagcactcggtccaacaggaagacgaaggaaggctactggaagcagcaaggcaaggaccgcagaatcactcgggcacgttctgatgagcagatcggggggaagaggatcttgaccttctacctgcaggataaacagaagactgactgggttatccatgagtattatctcactaaggcgaattctgatgagcagataggggactttgttctctgccgcttgaagaacaagtcaggcaagtctgatcatgatcagcaggatgatccactgtgcgatggaggtgaacctaatagtggtagctgcagtatggtctccaatgttgaacatcaaggatccaaagagctgggaactgttcttccgattcccaagggcaataatgatgaagctgaacatggtggcggtagctgcagtatggcctttgatgttgaaaatcaagcatccaaacacctggaaaattatcttccgattcccaatggcaatgataatgaagctgaacatgataaggatgccccattcttcgatcgaggtagcactagctgcagtatggcctccaatgttgaaaatcaagctgaagaaaattgggcatccattgagcaggttaatgtcgttccaattcccaatggaaatggtgatgaagctgaaactggtggtggtatgattacagaagaagaggaatacctggctttaaaggagctggaaaatgctcttcagagtcctattggcaatcctcatgaattccaaggcacgcaaactgatccttgtcatatagataagaatgatctttcgacctctgttgaaggccgacctgataagagcaatttgtctgatatgattgaagagctactagatgacccagaaaatctggattcactctttgatacgcctgcgccacctcaactgcatcagccaccaatgtataccaccaatgaccataatgatgaatgtcgtaagagggcatatccatttgaggacaatgagccttctcttgtgaagaagaagaatatttcaaccaatgacgatgacgaattagttagcaagaccgcatccagttcggaaaatcaagctgcaaatatcaatatgattcaagagagatattctcaacaaggagtaaatctgggatcagactttgattcatttctgccgaaggattacgattatacactaccatcaataaacggaggaccgggagattttccccatgacaataattttattgagtgggatgatttgccatccttatacgaaggtatggactattctcccgcaaagttctcacatacagttattgatggtggtaaaggagtaaccagtgacggaaacaccgaagtagtagatggatcggcatataaagatgtctcttctcataagcagttccttggaggtggagcttcctctgtcaacattactacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

562

Amino Acids

62.68

Weight (kDa)

4.62

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 148 4.6e-26 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 408, 862
Acc65I GGTACC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 169
AccBSI CCGCTC 1 cut(s) 235
AccI GTMKAC 1 cut(s) 1193
AccII CGCG 1 cut(s) 253
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 8 cut(s) 215, 235, 251, 337, 493, 675, 1317, 1539
AcsI RAATTY 4 cut(s) 182, 203, 457, 1010
AcuI CTGAAG 2 cut(s) 867, 968
AfaI GTAC 2 cut(s) 171, 239
AfiI CCNNNNNNNGG 1 cut(s) 569
AgsI TTSAA 9 cut(s) 130, 499, 599, 704, 836, 1073, 1112, 1284, 1361
AjnI CCWGG 3 cut(s) 165, 723, 954
AloI GAACNNNNNNTCC 2 cut(s) 616, 648
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 2 cut(s) 592, 1636
Ama87I CYCGRG 1 cut(s) 348
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 5 cut(s) 111, 146, 690, 822, 1075
ApeKI GCWGC 7 cut(s) 9, 161, 322, 576, 681, 813, 1340
ApoI RAATTY 4 cut(s) 182, 203, 457, 1010
Asp718I GGTACC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 1165
AspS9I GGNCC 4 cut(s) 146, 288, 334, 1457
AsuC2I CCSGG 1 cut(s) 1461
AsuHPI GGTGA 5 cut(s) 73, 190, 199, 569, 917
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 3 cut(s) 288, 334, 1457
BaeGI GKGCMC 1 cut(s) 355
BamHI GGATCC 2 cut(s) 97, 608
BanI GGYRCC 1 cut(s) 169
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbsI GAAGAC 2 cut(s) 305, 422
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 6 cut(s) 173, 334, 563, 668, 800, 1327
BccI CCATC 6 cut(s) 122, 545, 1450, 1516, 1559, 1604
BcgI CGANNNNNNTGC 2 cut(s) 1308, 1342
BciT130I CCWGG 3 cut(s) 167, 725, 956
BclI TGATCA 2 cut(s) 520, 526
BcnI CCSGG 1 cut(s) 1461
BcoDI GTCTC 2 cut(s) 592, 1636
BfaI CTAG 3 cut(s) 150, 810, 1121
BfmI CTRYAG 5 cut(s) 244, 401, 577, 682, 814
BfuAI ACCTGC 2 cut(s) 408, 862
BisI GCNGC 8 cut(s) 10, 162, 323, 493, 577, 682, 814, 1341
BlsI GCNGC 8 cut(s) 11, 163, 324, 494, 578, 683, 815, 1342
Bme1390I CCNGG 4 cut(s) 167, 725, 956, 1461
Bme18I GGWCC 3 cut(s) 288, 334, 1457
BmeT110I CYCGRG 1 cut(s) 348
BmgT120I GGNCC 4 cut(s) 146, 288, 334, 1457
BmiI GGNNCC 3 cut(s) 99, 171, 610
BmrFI CCNGG 4 cut(s) 167, 725, 956, 1461
BmrI ACTGGG 1 cut(s) 433
BmsI GCATC 6 cut(s) 21, 722, 772, 869, 1186, 1328
BmuI ACTGGG 1 cut(s) 433
BpiI GAAGAC 2 cut(s) 305, 422
BplI GAGNNNNNCTC 2 cut(s) 1357, 1389
BpuMI CCSGG 1 cut(s) 1461
BsaBI GATNNNNATC 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 592
BsaJI CCNNGG 6 cut(s) 165, 173, 210, 642, 1015, 1651
BsaWI WCCGGW 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 569
Bse1I ACTGG 5 cut(s) 320, 428, 925, 1323, 1584
Bse3DI GCAATG 1 cut(s) 760
Bse8I GATNNNNATC 1 cut(s) 525
BseAI TCCGGA 1 cut(s) 223
BseBI CCWGG 3 cut(s) 167, 725, 956
BseDI CCNNGG 6 cut(s) 165, 173, 210, 642, 1015, 1651
BseGI GGATG 7 cut(s) 541, 713, 787, 860, 1319, 1504, 1508
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 569
BseMI GCAATG 1 cut(s) 760
BseNI ACTGG 5 cut(s) 320, 428, 925, 1323, 1584
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 6 cut(s) 173, 334, 563, 668, 800, 1327
BseYI CCCAGC 1 cut(s) 619
Bsh1236I CGCG 1 cut(s) 253
Bsh1285I CGRYCG 1 cut(s) 799
BshFI GGCC 5 cut(s) 113, 148, 692, 824, 1077
BshNI GGYRCC 1 cut(s) 169
BsiEI CGRYCG 1 cut(s) 799
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 2 cut(s) 224, 1460
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 1 cut(s) 569
BsmAI GTCTC 2 cut(s) 592, 1636
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 5 cut(s) 113, 148, 692, 824, 1077
Bso31I GGTCTC 1 cut(s) 592
BsoBI CYCGRG 1 cut(s) 348
Bsp1286I GDGCHC 2 cut(s) 144, 355
Bsp13I TCCGGA 1 cut(s) 223
BspACI CCGC 8 cut(s) 215, 235, 251, 337, 493, 675, 1317, 1539
BspANI GGCC 5 cut(s) 113, 148, 692, 824, 1077
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 1 cut(s) 253
BspHI TCATGA 2 cut(s) 523, 1006
BspLI GGNNCC 3 cut(s) 99, 171, 610
BspMAI CTGCAG 4 cut(s) 405, 581, 686, 818
BspMI ACCTGC 2 cut(s) 408, 862
BspQI GCTCTTC 2 cut(s) 987, 1107
BspT107I GGYRCC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 592
BsrBI CCGCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 760
BsrI ACTGG 5 cut(s) 320, 428, 925, 1323, 1584
BssECI CCNNGG 6 cut(s) 165, 173, 210, 642, 1015, 1651
BssNAI GTATAC 1 cut(s) 1194
BssT1I CCWWGG 4 cut(s) 173, 642, 1015, 1651
Bst1107I GTATAC 1 cut(s) 1194
Bst2UI CCWGG 3 cut(s) 167, 725, 956
Bst4CI ACNGT 5 cut(s) 211, 248, 546, 628, 1558
Bst6I CTCTTC 5 cut(s) 374, 939, 987, 1107, 1639
BstAPI GCANNNNNTGC 1 cut(s) 813
BstC8I GCNNGC 3 cut(s) 140, 1022, 1161
BstDEI CTNAG 2 cut(s) 157, 450
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 7 cut(s) 541, 713, 787, 860, 1319, 1504, 1508
BstFNI CGCG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 1165
BstMAI GTCTC 2 cut(s) 592, 1636
BstMCI CGRYCG 1 cut(s) 799
BstMWI GCNNNNNNNGC 3 cut(s) 336, 681, 813
BstNI CCWGG 3 cut(s) 167, 725, 956
BstSCI CCNGG 4 cut(s) 165, 723, 954, 1459
BstSFI CTRYAG 5 cut(s) 244, 401, 577, 682, 814
BstSLI GKGCMC 1 cut(s) 355
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 6 cut(s) 173, 334, 563, 668, 800, 1327
BstV2I GAAGAC 2 cut(s) 305, 422
BstX2I RGATCY 4 cut(s) 28, 97, 384, 608
BstXI CCANNNNNNTGG 2 cut(s) 619, 724
BstYI RGATCY 4 cut(s) 28, 97, 384, 608
BstZ17I GTATAC 1 cut(s) 1194
BsuRI GGCC 5 cut(s) 113, 148, 692, 824, 1077
BtgI CCRYGG 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 564
BtsCI GGATG 7 cut(s) 541, 713, 787, 860, 1319, 1504, 1508
BtsIMutI CAGTG 2 cut(s) 542, 1591
BveI ACCTGC 2 cut(s) 408, 862
Cac8I GCNNGC 3 cut(s) 140, 1022, 1161
CciI TCATGA 2 cut(s) 523, 1006
CfoI GCGC 1 cut(s) 1165
Cfr13I GGNCC 4 cut(s) 146, 288, 334, 1457
Csp6I GTAC 2 cut(s) 170, 238
CviAII CATG 7 cut(s) 229, 434, 524, 668, 773, 1007, 1475
CviQI GTAC 2 cut(s) 170, 238
DdeI CTNAG 2 cut(s) 157, 450
DraI TTTAAA 2 cut(s) 262, 963
Eam1104I CTCTTC 5 cut(s) 374, 939, 987, 1107, 1639
EarI CTCTTC 5 cut(s) 374, 939, 987, 1107, 1639
EciI GGCGGA 1 cut(s) 230
Eco130I CCWWGG 4 cut(s) 173, 642, 1015, 1651
Eco31I GGTCTC 1 cut(s) 592
Eco47I GGWCC 3 cut(s) 288, 334, 1457
Eco57I CTGAAG 2 cut(s) 867, 968
Eco88I CYCGRG 1 cut(s) 348
EcoRI GAATTC 3 cut(s) 203, 457, 1010
EcoRII CCWGG 3 cut(s) 165, 723, 954
EcoT14I CCWWGG 4 cut(s) 173, 642, 1015, 1651
ErhI CCWWGG 4 cut(s) 173, 642, 1015, 1651
FaeI CATG 7 cut(s) 232, 437, 527, 671, 776, 1010, 1478
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 1 cut(s) 491
FatI CATG 7 cut(s) 228, 433, 523, 667, 772, 1006, 1474
FauI CCCGC 1 cut(s) 1546
FbaI TGATCA 2 cut(s) 520, 526
FblI GTMKAC 1 cut(s) 1193
Fnu4HI GCNGC 8 cut(s) 10, 162, 323, 493, 577, 682, 814, 1341
FokI GGATG 7 cut(s) 548, 700, 794, 847, 1306, 1495, 1511
Fsp4HI GCNGC 8 cut(s) 10, 162, 323, 493, 577, 682, 814, 1341
FspBI CTAG 3 cut(s) 150, 810, 1121
GlaI GCGC 1 cut(s) 1164
GluI GCNGC 8 cut(s) 10, 162, 323, 493, 577, 682, 814, 1341
GsaI CCCAGC 1 cut(s) 623
HaeIII GGCC 5 cut(s) 113, 148, 692, 824, 1077
HapII CCGG 2 cut(s) 224, 1460
HhaI GCGC 1 cut(s) 1165
Hin1II CATG 7 cut(s) 232, 437, 527, 671, 776, 1010, 1478
Hin6I GCGC 1 cut(s) 1163
HinP1I GCGC 1 cut(s) 1163
HincII GTYRAC 1 cut(s) 1675
HindII GTYRAC 1 cut(s) 1675
HpaII CCGG 2 cut(s) 224, 1460
HphI GGTGA 5 cut(s) 73, 190, 199, 569, 917
Hpy166II GTNNAC 3 cut(s) 560, 1194, 1675
Hpy188III TCNNGA 8 cut(s) 101, 188, 224, 388, 524, 1007, 1139, 1361
Hpy8I GTNNAC 3 cut(s) 560, 1194, 1675
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 8 cut(s) 88, 298, 302, 403, 1067, 1266, 1414, 1514
HpyCH4III ACNGT 5 cut(s) 211, 248, 546, 628, 1558
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 7 cut(s) 12, 403, 579, 684, 816, 1177, 1343
HpyF10VI GCNNNNNNNGC 3 cut(s) 336, 681, 813
HpyF3I CTNAG 2 cut(s) 157, 450
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 7 cut(s) 232, 437, 527, 671, 776, 1010, 1478
HspAI GCGC 1 cut(s) 1163
Kpn2I TCCGGA 1 cut(s) 223
KpnI GGTACC 1 cut(s) 173
Ksp22I TGATCA 2 cut(s) 520, 526
LguI GCTCTTC 2 cut(s) 987, 1107
LmnI GCTCC 4 cut(s) 55, 232, 967, 1661
Lsp1109I GCAGC 6 cut(s) 173, 334, 563, 668, 800, 1327
LweI GCATC 6 cut(s) 21, 722, 772, 869, 1186, 1328
MaeI CTAG 3 cut(s) 150, 810, 1121
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 2 cut(s) 1579, 1586
MbiI CCGCTC 1 cut(s) 235
MflI RGATCY 4 cut(s) 28, 97, 384, 608
MhlI GDGCHC 2 cut(s) 144, 355
MlyI GAGTC 2 cut(s) 212, 997
MmeI TCCRAC 2 cut(s) 72, 315
MroI TCCGGA 1 cut(s) 223
MseI TTAA 3 cut(s) 261, 876, 962
MslI CAYNNNNRTG 1 cut(s) 1212
MspI CCGG 2 cut(s) 224, 1460
MspR9I CCNGG 4 cut(s) 167, 725, 956, 1461
MvaI CCWGG 3 cut(s) 167, 725, 956
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 3 cut(s) 336, 681, 813
NciI CCSGG 1 cut(s) 1461
NlaIII CATG 7 cut(s) 232, 437, 527, 671, 776, 1010, 1478
NlaIV GGNNCC 3 cut(s) 99, 171, 610
NmuCI GTSAC 1 cut(s) 1586
PagI TCATGA 2 cut(s) 523, 1006
PciSI GCTCTTC 2 cut(s) 987, 1107
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 1596
PfeI GAWTC 8 cut(s) 36, 85, 342, 637, 742, 1142, 1357, 1406
PkrI GCNGC 8 cut(s) 11, 163, 324, 494, 578, 683, 815, 1342
Ple19I CGATCG 1 cut(s) 799
PleI GAGTC 2 cut(s) 212, 996
PpsI GAGTC 2 cut(s) 212, 996
Psp6I CCWGG 3 cut(s) 165, 723, 954
PspFI CCCAGC 1 cut(s) 619
PspGI CCWGG 3 cut(s) 165, 723, 954
PspN4I GGNNCC 3 cut(s) 99, 171, 610
PspPI GGNCC 4 cut(s) 146, 288, 334, 1457
PstI CTGCAG 4 cut(s) 405, 581, 686, 818
PsuI RGATCY 4 cut(s) 28, 97, 384, 608
PvuI CGATCG 1 cut(s) 799
RsaI GTAC 2 cut(s) 171, 239
RsaNI GTAC 2 cut(s) 170, 238
RseI CAYNNNNRTG 1 cut(s) 1212
SapI GCTCTTC 2 cut(s) 987, 1107
SaqAI TTAA 3 cut(s) 261, 876, 962
SatI GCNGC 8 cut(s) 10, 162, 323, 493, 577, 682, 814, 1341
Sau96I GGNCC 4 cut(s) 146, 288, 334, 1457
SbfI CCTGCAGG 1 cut(s) 405
SchI GAGTC 2 cut(s) 212, 997
ScrFI CCNGG 4 cut(s) 167, 725, 956, 1461
SdaI CCTGCAGG 1 cut(s) 405
SduI GDGCHC 2 cut(s) 144, 355
SfaNI GCATC 6 cut(s) 21, 722, 772, 869, 1186, 1328
SfcI CTRYAG 5 cut(s) 244, 401, 577, 682, 814
SinI GGWCC 3 cut(s) 288, 334, 1457
SmiMI CAYNNNNRTG 1 cut(s) 1212
Sse8387I CCTGCAGG 1 cut(s) 405
SsiI CCGC 8 cut(s) 215, 235, 251, 337, 493, 675, 1317, 1539
SspI AATATT 1 cut(s) 1279
SspMI CTAG 3 cut(s) 150, 810, 1121
StyD4I CCNGG 4 cut(s) 165, 723, 954, 1459
StyI CCWWGG 4 cut(s) 173, 642, 1015, 1651
TaaI ACNGT 5 cut(s) 211, 248, 546, 628, 1558
TaiI ACGT 1 cut(s) 358
TaqI TCGA 3 cut(s) 795, 799, 1061
TaqII GACCGA 1 cut(s) 276
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 8 cut(s) 36, 85, 342, 637, 742, 1142, 1357, 1406
Tru1I TTAA 3 cut(s) 261, 876, 962
Tru9I TTAA 3 cut(s) 261, 876, 962
TscAI CASTG 2 cut(s) 549, 1591
TseFI GTSAC 1 cut(s) 1586
TseI GCWGC 7 cut(s) 9, 161, 322, 576, 681, 813, 1340
Tsp45I GTSAC 1 cut(s) 1586
TspDTI ATGAA 7 cut(s) 11, 672, 777, 924, 1023, 1230, 1398
TspGWI ACGGA 2 cut(s) 1467, 1605
TspRI CASTG 2 cut(s) 549, 1591
VpaK11BI GGWCC 3 cut(s) 288, 334, 1457
XapI RAATTY 4 cut(s) 182, 203, 457, 1010
XmiI GTMKAC 1 cut(s) 1193
XspI CTAG 3 cut(s) 150, 810, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.