Rmu_sc0002119.1_g000022
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002119.1
OG0002549
Physical Location & Seq
Forward (+)
104447 .. 107416
2970 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1674 bp
atgatgatgatgacgacgagcagcgaccgcatcacacttccaaagggtttccgattccagccctcggaggaggagctgctgagtcattacctggtgaagaagaatcatcagcgcaaggatcccgaaatcgaggtcatcatccctgagatcaatgtgtgcgaccacgagccccgcgatttaccagccctggtgttcacaagggcgaaatttctgccggcctctccgaacatggagtggcacttcttcagtcggcgagtttttaaacacagcaaaagcaaaagcgaaggcaaaggcaaaagcaaaggcactcaaatcaacagggctaccaaggaaggctcctggaagaagcaaggcgatgacaaaagaatcactcggccctattctgataagcagatcggggggaagaggatcttgaccttctacctgccgaagaaacagaggactgactgggttatccatgagtattatctcactaagcccaattctgatgagcagatcggggactttgttctctgccgcttgaagcacaagtcaggcaagtctgatcatgatcagcaggatgatccactgtgcgatggaggtgaacctaatagtggtagctgcagtatggtctccaacgttgaagatcaaggatccaaagagctgggaactgttcttccgattcccaatggcaataatgatgaagctgaacatggtggcggtagctgcagtatggcctttgatgttgaaaatcaagcatccaaacagctggaaaatgatctttcaattcccaatggcaatgataatgaagctgaacatggaagtagctgccccatcacctctggtttcgataatgaagctgcagcagatggtatgcttacagaagcagaagaatacctggcattcaaggagctggaagaattttttggcaatgagcaagatgttagaggctcgcaaactaatccctgttatattgataagaatgatctttcgagctctgtcgaaggtcaacctgctgatagctgcaattcatctgattctgatatggttgaagaggtgagaacaagcatgccttttgatttctgctatgaaattttcaacttgaagcacaagaagtatattgaaatgtatctaacattatcttgtttgtcattcttgatctaccagttccttgatgaaccaggacatctggccttaccccttcatccaccttcgttacctcaactgcagtcaccaatatacacaaagctgggcaccaccaatgcccataatgatgaatctcgtaagaggaaatatccatttggggataatgacctttttctcacgaagaaaaatcatattgatgtagatagaaactcttcatcaaattctgaaaatcaagctgcggatgcgattccagagggatattctcaaccaggagaaaagctgggatctgattcatttcagtcgcagaaactaccatcaataaacagagaaccgggagattttccccatgacaataatttaattgaatgggataagttgccatctataacagaaggttttgactcttctctcgagctctcagatacatttattgatttgtacctctgtgacggaaacaccgaagtcatctctgtatcggttggtgaagatgtagaggcattatcttgctgtttatcttccccagaagaaactgaaagtcctggaagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

557

Amino Acids

62.37

Weight (kDa)

4.8

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 156 1.3e-27 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 432, 1000
AccB1I GGYRCC 1 cut(s) 1232
AccII CGCG 1 cut(s) 174
AciI CCGC 5 cut(s) 28, 172, 517, 699, 1364
AclI AACGTT 1 cut(s) 618
AclWI GGATC 7 cut(s) 113, 126, 416, 557, 627, 640, 1417
AcsI RAATTY 4 cut(s) 206, 899, 1071, 1345
AcuI CTGAAG 1 cut(s) 229
AfaI GTAC 1 cut(s) 1565
AfiI CCNNNNNNNGG 2 cut(s) 64, 593
AjnI CCWGG 7 cut(s) 90, 186, 338, 876, 1159, 1393, 1663
AjuI GAANNNNNNNTTGG 2 cut(s) 888, 920
AloI GAACNNNNNNTCC 2 cut(s) 640, 672
Alw21I GWGCWC 2 cut(s) 977, 1542
Alw26I GTCTC 1 cut(s) 616
AlwI GGATC 7 cut(s) 113, 126, 416, 557, 627, 640, 1417
Ama87I CYCGRG 1 cut(s) 1535
AoxI GGCC 4 cut(s) 216, 374, 714, 1170
ApeKI GCWGC 9 cut(s) 21, 76, 600, 705, 807, 839, 842, 1002, 1361
ApoI RAATTY 4 cut(s) 206, 899, 1071, 1345
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
Asp700I GAANNNNTTC 1 cut(s) 1336
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 375
AsuC2I CCSGG 1 cut(s) 1458
AsuHPI GGTGA 6 cut(s) 106, 593, 808, 1048, 1203, 1619
AvaI CYCGRG 1 cut(s) 1535
BaeGI GKGCMC 1 cut(s) 1235
BamHI GGATCC 2 cut(s) 118, 632
BanI GGYRCC 1 cut(s) 1232
BanII GRGCYC 3 cut(s) 171, 977, 1542
BauI CACGAG 1 cut(s) 164
Bbv12I GWGCWC 2 cut(s) 977, 1542
BbvI GCAGC 9 cut(s) 33, 63, 587, 692, 794, 826, 854, 989, 1348
BccI CCATC 5 cut(s) 569, 821, 842, 1447, 1513
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BciT130I CCWGG 7 cut(s) 92, 188, 340, 878, 1161, 1395, 1665
BclI TGATCA 2 cut(s) 544, 550
BcnI CCSGG 1 cut(s) 1458
BcoDI GTCTC 1 cut(s) 616
BfmI CTRYAG 4 cut(s) 601, 706, 840, 1205
BfuAI ACCTGC 2 cut(s) 432, 1000
Bme1390I CCNGG 8 cut(s) 92, 188, 340, 878, 1161, 1395, 1458, 1665
BmeT110I CYCGRG 1 cut(s) 1535
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 4 cut(s) 120, 337, 634, 1234
BmrFI CCNGG 8 cut(s) 92, 188, 340, 878, 1161, 1395, 1458, 1665
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 3 cut(s) 39, 746, 1357
BmuI ACTGGG 1 cut(s) 457
BpuMI CCSGG 1 cut(s) 1458
BsaBI GATNNNNATC 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 3 cut(s) 63, 186, 327
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 593
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 452, 1144
Bse3DI GCAATG 2 cut(s) 784, 916
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 7 cut(s) 92, 188, 340, 878, 1161, 1395, 1665
BseDI CCNNGG 3 cut(s) 63, 186, 327
BseGI GGATG 5 cut(s) 138, 565, 737, 1183, 1372
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 2 cut(s) 64, 593
BseMI GCAATG 2 cut(s) 784, 916
BseMII CTCAG 3 cut(s) 71, 135, 1557
BseNI ACTGG 2 cut(s) 452, 1144
BseRI GAGGAG 2 cut(s) 83, 86
BseSI GKGCMC 1 cut(s) 1235
BseXI GCAGC 9 cut(s) 33, 63, 587, 692, 794, 826, 854, 989, 1348
BseYI CCCAGC 3 cut(s) 643, 1228, 1405
Bsh1236I CGCG 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 4 cut(s) 218, 376, 716, 1172
BshNI GGYRCC 1 cut(s) 1232
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 2 cut(s) 977, 1542
BsiHKCI CYCGRG 1 cut(s) 1535
BsiSI CCGG 2 cut(s) 215, 1457
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 2 cut(s) 64, 593
BsmAI GTCTC 1 cut(s) 616
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 881
BsnI GGCC 4 cut(s) 218, 376, 716, 1172
Bso31I GGTCTC 1 cut(s) 616
BsoBI CYCGRG 1 cut(s) 1535
Bsp1286I GDGCHC 4 cut(s) 171, 977, 1235, 1542
BspACI CCGC 5 cut(s) 28, 172, 517, 699, 1364
BspANI GGCC 4 cut(s) 218, 376, 716, 1172
BspCNI CTCAG 3 cut(s) 72, 136, 1556
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 4 cut(s) 120, 337, 634, 1234
BspMAI CTGCAG 4 cut(s) 605, 710, 844, 1209
BspMI ACCTGC 2 cut(s) 432, 1000
BspPI GGATC 7 cut(s) 113, 126, 416, 557, 627, 640, 1417
BspT107I GGYRCC 1 cut(s) 1232
BspTNI GGTCTC 1 cut(s) 616
BsrDI GCAATG 2 cut(s) 784, 916
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 2 cut(s) 452, 1144
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 3 cut(s) 63, 186, 327
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 164
Bst2UI CCWGG 7 cut(s) 92, 188, 340, 878, 1161, 1395, 1665
Bst4CI ACNGT 2 cut(s) 570, 652
Bst6I CTCTTC 4 cut(s) 398, 1026, 1342, 1534
BstC8I GCNNGC 3 cut(s) 216, 932, 1049
BstDEI CTNAG 4 cut(s) 80, 144, 474, 1543
BstF5I GGATG 5 cut(s) 138, 565, 737, 1183, 1372
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 616
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 3 cut(s) 27, 705, 1367
BstNI CCWGG 7 cut(s) 92, 188, 340, 878, 1161, 1395, 1665
BstNSI RCATGY 1 cut(s) 1051
BstSCI CCNGG 8 cut(s) 90, 186, 338, 876, 1159, 1393, 1456, 1663
BstSFI CTRYAG 4 cut(s) 601, 706, 840, 1205
BstSLI GKGCMC 1 cut(s) 1235
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 9 cut(s) 33, 63, 587, 692, 794, 826, 854, 989, 1348
BstX2I RGATCY 4 cut(s) 118, 408, 632, 1409
BstXI CCANNNNNNTGG 2 cut(s) 643, 748
BstYI RGATCY 4 cut(s) 118, 408, 632, 1409
BsuRI GGCC 4 cut(s) 218, 376, 716, 1172
BtgZI GCGATG 2 cut(s) 369, 588
BtsCI GGATG 5 cut(s) 138, 565, 737, 1183, 1372
BtsIMutI CAGTG 1 cut(s) 566
BveI ACCTGC 2 cut(s) 432, 1000
Cac8I GCNNGC 3 cut(s) 216, 932, 1049
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 375
CsiI ACCWGGT 1 cut(s) 90
Csp6I GTAC 1 cut(s) 1564
CviAII CATG 7 cut(s) 229, 458, 548, 692, 797, 1048, 1472
CviQI GTAC 1 cut(s) 1564
DdeI CTNAG 4 cut(s) 80, 144, 474, 1543
DraI TTTAAA 1 cut(s) 262
Eam1104I CTCTTC 4 cut(s) 398, 1026, 1342, 1534
EarI CTCTTC 4 cut(s) 398, 1026, 1342, 1534
Ecl136II GAGCTC 2 cut(s) 975, 1540
Eco130I CCWWGG 1 cut(s) 327
Eco24I GRGCYC 3 cut(s) 171, 977, 1542
Eco31I GGTCTC 1 cut(s) 616
Eco53kI GAGCTC 2 cut(s) 975, 1540
Eco57I CTGAAG 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 1535
EcoICRI GAGCTC 2 cut(s) 975, 1540
EcoRII CCWGG 7 cut(s) 90, 186, 338, 876, 1159, 1393, 1663
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 3 cut(s) 171, 977, 1542
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 7 cut(s) 232, 461, 551, 695, 800, 1051, 1475
FalI AAGNNNNNCTT 4 cut(s) 395, 427, 1036, 1068
FaqI GGGAC 1 cut(s) 515
FatI CATG 7 cut(s) 228, 457, 547, 691, 796, 1047, 1471
FauI CCCGC 1 cut(s) 179
FbaI TGATCA 2 cut(s) 544, 550
FokI GGATG 5 cut(s) 125, 572, 724, 1170, 1379
FriOI GRGCYC 3 cut(s) 171, 977, 1542
GlaI GCGC 1 cut(s) 113
GsaI CCCAGC 3 cut(s) 647, 1232, 1409
HaeIII GGCC 4 cut(s) 218, 376, 716, 1172
HapII CCGG 2 cut(s) 215, 1457
HhaI GCGC 1 cut(s) 114
Hin1II CATG 7 cut(s) 232, 461, 551, 695, 800, 1051, 1475
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HincII GTYRAC 1 cut(s) 989
HindII GTYRAC 1 cut(s) 989
HpaII CCGG 2 cut(s) 215, 1457
HphI GGTGA 6 cut(s) 106, 593, 808, 1048, 1203, 1619
Hpy166II GTNNAC 3 cut(s) 195, 584, 989
Hpy188III TCNNGA 7 cut(s) 122, 412, 548, 1135, 1303, 1376, 1535
Hpy8I GTNNAC 3 cut(s) 195, 584, 989
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 7 cut(s) 278, 326, 427, 977, 1190, 1200, 1511
HpyCH4III ACNGT 2 cut(s) 570, 652
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 5 cut(s) 603, 708, 842, 1005, 1207
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 705, 1367
HpyF3I CTNAG 4 cut(s) 80, 144, 474, 1543
HpySE526I ACGT 1 cut(s) 618
Hsp92II CATG 7 cut(s) 232, 461, 551, 695, 800, 1051, 1475
HspAI GCGC 1 cut(s) 112
KroI GCCGGC 1 cut(s) 214
KroNI GCCGGC 1 cut(s) 216
Ksp22I TGATCA 2 cut(s) 544, 550
LmnI GCTCC 3 cut(s) 73, 341, 889
Lsp1109I GCAGC 9 cut(s) 33, 63, 587, 692, 794, 826, 854, 989, 1348
LweI GCATC 3 cut(s) 39, 746, 1357
MabI ACCWGGT 1 cut(s) 90
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 3 cut(s) 1194, 1209, 1571
MflI RGATCY 4 cut(s) 118, 408, 632, 1409
MhlI GDGCHC 4 cut(s) 171, 977, 1235, 1542
MluCI AATT 9 cut(s) 206, 481, 765, 899, 1006, 1071, 1345, 1480, 1485
MlyI GAGTC 2 cut(s) 91, 1520
MmeI TCCRAC 1 cut(s) 639
MroNI GCCGGC 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 1336
MseI TTAA 2 cut(s) 261, 1484
MslI CAYNNNNRTG 2 cut(s) 1251, 1320
MspA1I CMGCKG 1 cut(s) 748
MspI CCGG 2 cut(s) 215, 1457
MspR9I CCNGG 8 cut(s) 92, 188, 340, 878, 1161, 1395, 1458, 1665
Mva1269I GAATGC 1 cut(s) 881
MvaI CCWGG 7 cut(s) 92, 188, 340, 878, 1161, 1395, 1665
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 27, 705, 1367
NaeI GCCGGC 1 cut(s) 216
NciI CCSGG 1 cut(s) 1458
NgoMIV GCCGGC 1 cut(s) 214
NlaIII CATG 7 cut(s) 232, 461, 551, 695, 800, 1051, 1475
NlaIV GGNNCC 4 cut(s) 120, 337, 634, 1234
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 2 cut(s) 1209, 1571
NspI RCATGY 1 cut(s) 1051
PaeI GCATGC 1 cut(s) 1051
PaeR7I CTCGAG 1 cut(s) 1535
PagI TCATGA 1 cut(s) 547
PcsI WCGNNNNNNNCGW 2 cut(s) 171, 1581
PctI GAATGC 1 cut(s) 881
PdiI GCCGGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 1336
PfeI GAWTC 8 cut(s) 54, 103, 366, 661, 1016, 1256, 1372, 1415
PfoI TCCNGGA 2 cut(s) 338, 1663
PleI GAGTC 2 cut(s) 90, 1520
PpsI GAGTC 2 cut(s) 90, 1520
Psp124BI GAGCTC 2 cut(s) 977, 1542
Psp1406I AACGTT 1 cut(s) 618
Psp6I CCWGG 7 cut(s) 90, 186, 338, 876, 1159, 1393, 1663
PspFI CCCAGC 3 cut(s) 643, 1228, 1405
PspGI CCWGG 7 cut(s) 90, 186, 338, 876, 1159, 1393, 1663
PspN4I GGNNCC 4 cut(s) 120, 337, 634, 1234
PspPI GGNCC 1 cut(s) 375
PstI CTGCAG 4 cut(s) 605, 710, 844, 1209
PsuI RGATCY 4 cut(s) 118, 408, 632, 1409
PvuII CAGCTG 1 cut(s) 748
RsaI GTAC 1 cut(s) 1565
RsaNI GTAC 1 cut(s) 1564
RseI CAYNNNNRTG 2 cut(s) 1251, 1320
SacI GAGCTC 2 cut(s) 977, 1542
SaqAI TTAA 2 cut(s) 261, 1484
Sau96I GGNCC 1 cut(s) 375
SchI GAGTC 2 cut(s) 91, 1520
ScrFI CCNGG 8 cut(s) 92, 188, 340, 878, 1161, 1395, 1458, 1665
SduI GDGCHC 4 cut(s) 171, 977, 1235, 1542
SexAI ACCWGGT 1 cut(s) 90
SfaNI GCATC 3 cut(s) 39, 746, 1357
SfcI CTRYAG 4 cut(s) 601, 706, 840, 1205
Sfr274I CTCGAG 1 cut(s) 1535
SlaI CTCGAG 1 cut(s) 1535
SmiMI CAYNNNNRTG 2 cut(s) 1251, 1320
SmlI CTYRAG 1 cut(s) 1535
SmoI CTYRAG 1 cut(s) 1535
SphI GCATGC 1 cut(s) 1051
Sse9I AATT 9 cut(s) 206, 481, 765, 899, 1006, 1071, 1345, 1480, 1485
SsiI CCGC 5 cut(s) 28, 172, 517, 699, 1364
SstI GAGCTC 2 cut(s) 977, 1542
StyD4I CCNGG 8 cut(s) 90, 186, 338, 876, 1159, 1393, 1456, 1663
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 2 cut(s) 570, 652
TaiI ACGT 1 cut(s) 621
TaqI TCGA 5 cut(s) 129, 828, 971, 981, 1536
TasI AATT 9 cut(s) 206, 481, 765, 899, 1006, 1071, 1345, 1480, 1485
TauI GCSGC 1 cut(s) 519
TfiI GAWTC 8 cut(s) 54, 103, 366, 661, 1016, 1256, 1372, 1415
Tru1I TTAA 2 cut(s) 261, 1484
Tru9I TTAA 2 cut(s) 261, 1484
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 2 cut(s) 1209, 1571
TseI GCWGC 9 cut(s) 21, 76, 600, 705, 807, 839, 842, 1002, 1361
Tsp45I GTSAC 2 cut(s) 1209, 1571
TspGWI ACGGA 1 cut(s) 1590
TspRI CASTG 1 cut(s) 573
XapI RAATTY 4 cut(s) 206, 899, 1071, 1345
XceI RCATGY 1 cut(s) 1051
XhoI CTCGAG 1 cut(s) 1535
XmnI GAANNNNTTC 1 cut(s) 1336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.