Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002360.1

Orthogroup ID

OG0003321

Physical Location & Seq

Genomic Coordinates Reverse (-)

62067 .. 63723

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002360.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atgaactccgaactcgacccaactcgtaatccattctcttctcgttttcctcgttcaaggcttatgagactttgtctggatgatatgaatgcctctgctcaaaggcgggctttgttaatgcgcggcatgtttactctcttagctcactatcttgacaacgacgacgacgacgaagacgaagatgaagacgaagacgaagaggaggaggacgaggatccccaaaaacaagaaaaacaccgactcgctaaccggaagcggcgaagcactcgccgtcgcggcacaactacacgaagaagtcgaaacgacggcgttccgagccaagcctacgctgggccccactcgctttcgttgacaagcgacgcggagagcccatttaaaccagagaactcgctcatcccaagaacaaaaaccgacacgtcgtttatcctccttccgaaaaacccggaaatggaatcgccggagcagatcttcattctttcggggcagagcaacatggcgggtcggggcggcgtgatccgtgaccacggccacaaccaccaccagcactgggacggcgtcgttccgtcggaggctcagcccgacccttcgatcctccgcctcaacgctcagctccactgggaggcggcgcgtgagcctctccacgccgacatcgacgccaagaaggtgtgcggtttgggtccgggaatgtcgttcgccaacgcggtgagggggcgcgtggaggggaagattgggctggtgccgtgcgctgttggcggcacggccatcaaggagtgggcgcgtggggagcatctgtacgagaacatggtgaagagggcgcgtgagagcgtgaagaacgggggagagatcaaagggttgctgtggtaccagggggagagcgacacgtcgtctcagcatgatgttgatgcgtaccacgagaacatggttaggctcattgagaatgtgcgccatgaccttgctttgccttcacttccaattatccaggtggctatttgttctggtgatgagaagttcttggagaaaattagggaggttcaattggggatgaaggttgagaatgttgtgtgtgtggatgccaagggattggagctgaaggatgatcatcttcacctgactaccaaggcacaagttcagttgggtcagatgcttgctgatgcgtacctcaagcattttggatcagctaattcccatcatcctgccctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SASA

Protein Analysis

400

Amino Acids

44.91

Weight (kDa)

5.82

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34215 AT4G34215
fragaria_vesca	FvH4_2g05290 FvH4_2g05290 FvH4_2g33790
malus_domestica	MD15G1076800.v1.1
prunus_persica	Prupe.1G430200_v2.0.a1 Prupe.8G134400_v2.0.a1 Prupe.8G134400_v2.0.a1
pyrus_communis	pycom10g08260 pycom15g07160
rosa_chinensis	RchiOBHm_Chr6g0255411 RchiOBHm_Chr6g0255421
rosa_laevigata	RLG00000010621 RLG00000014839 RLG00000014840
rosa_multiflora	Rmu_sc0002360.1_g000013 Rmu_sc0015750.1_g000001 Rmu_sc0015750.1_g000003
rosa_roxburghii	Rroxscaffold_7G00210000 Rroxscaffold_7G00210010
rosa_rugosa	Rorug05G0558400 Rorug05G0558500 Rorug05G0558600
rosa_samantha	Rh6AG075100 Rh6AG075200 Rh6BG068500 Rh6BG068600 Rh6BG069000 Rh6CG068100 Rh6CG068200 Rh6CG494100 Rh6CG494200 Rh6DG064800 Rh6DG065000
rosa_wichuraiana	Rw6G006630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	861
AccB1I	GGYRCC	2 cut(s)	736, 861
AccII	CGCG	8 cut(s)	123, 276, 362, 628, 701, 714, 778, 817
AclWI	GGATC	5 cut(s)	209, 222, 508, 583, 1180
AcoI	YGGCCR	2 cut(s)	526, 759
AcuI	CTGAAG	1 cut(s)	1109
AcyI	GRCGYC	2 cut(s)	555, 654
AfaI	GTAC	4 cut(s)	794, 863, 908, 1157
AfiI	CCNNNNNNNGG	4 cut(s)	330, 448, 547, 619
AflIII	ACRYGT	2 cut(s)	414, 879
AgsI	TTSAA	2 cut(s)	57, 1034
AhdI	GACNNNNNGTC	1 cut(s)	883
AjiI	CACGTC	2 cut(s)	417, 882
AjnI	CCWGG	2 cut(s)	864, 978
AluBI	AGCT	4 cut(s)	143, 610, 1087, 1178
AluI	AGCT	4 cut(s)	143, 610, 1087, 1178
Alw26I	GTCTC	2 cut(s)	61, 891
AlwI	GGATC	5 cut(s)	209, 222, 508, 583, 1180
AoxI	GGCC	3 cut(s)	332, 526, 759
ApaI	GGGCCC	1 cut(s)	336
Asp718I	GGTACC	1 cut(s)	861
AspLEI	GCGC	7 cut(s)	123, 628, 714, 746, 778, 817, 945
AspS9I	GGNCC	3 cut(s)	332, 333, 677
AsuC2I	CCSGG	2 cut(s)	443, 681
AsuHPI	GGTGA	4 cut(s)	715, 817, 1010, 1097
AvaII	GGWCC	1 cut(s)	677
BaeGI	GKGCMC	1 cut(s)	336
BamHI	GGATCC	1 cut(s)	214
BanI	GGYRCC	2 cut(s)	736, 861
BanII	GRGCYC	2 cut(s)	336, 371
BauI	CACGAG	1 cut(s)	911
BbsI	GAAGAC	3 cut(s)	180, 192, 198
BccI	CCATC	2 cut(s)	770, 1194
BceAI	ACGGC	6 cut(s)	255, 322, 541, 568, 724, 774
BciT130I	CCWGG	2 cut(s)	866, 980
BclI	TGATCA	1 cut(s)	1096
BcnI	CCSGG	2 cut(s)	443, 681
BcoDI	GTCTC	2 cut(s)	61, 891
BglI	GCCNNNNNGGC	1 cut(s)	276
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	6 cut(s)	124, 257, 277, 508, 624, 754
BlpI	GCTNAGC	2 cut(s)	573, 606
BlsI	GCNGC	6 cut(s)	125, 258, 278, 509, 625, 755
Bme1390I	CCNGG	4 cut(s)	443, 681, 866, 980
Bme18I	GGWCC	1 cut(s)	677
BmeRI	GACNNNNNGTC	1 cut(s)	883
BmgBI	CACGTC	2 cut(s)	417, 882
BmgT120I	GGNCC	3 cut(s)	332, 333, 677
BmiI	GGNNCC	6 cut(s)	216, 334, 335, 678, 738, 863
BmrFI	CCNGG	4 cut(s)	443, 681, 866, 980
BmrI	ACTGGG	2 cut(s)	556, 625
BmsI	GCATC	5 cut(s)	796, 892, 1060, 1131, 1141
BmuI	ACTGGG	2 cut(s)	556, 625
BpiI	GAAGAC	3 cut(s)	180, 192, 198
Bpu1102I	GCTNAGC	2 cut(s)	573, 606
BpuEI	CTTGAG	1 cut(s)	1145
BpuMI	CCSGG	2 cut(s)	443, 681
BsaBI	GATNNNNATC	1 cut(s)	1098
BsaHI	GRCGYC	2 cut(s)	555, 654
BsaJI	CCNNGG	4 cut(s)	523, 865, 1074, 1116
BsaWI	WCCGGW	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	776, 806
Bsc4I	CCNNNNNNNGG	4 cut(s)	330, 448, 547, 619
Bse1I	ACTGG	2 cut(s)	551, 620
Bse8I	GATNNNNATC	1 cut(s)	1098
BseBI	CCWGG	2 cut(s)	866, 980
BseDI	CCNNGG	4 cut(s)	523, 865, 1074, 1116
BseGI	GGATG	6 cut(s)	85, 393, 1047, 1075, 1099, 1189
BseJI	GATNNNNATC	1 cut(s)	1098
BseLI	CCNNNNNNNGG	4 cut(s)	330, 448, 547, 619
BseMII	CTCAG	3 cut(s)	587, 620, 902
BseNI	ACTGG	2 cut(s)	551, 620
BseRI	GAGGAG	2 cut(s)	215, 218
BseSI	GKGCMC	1 cut(s)	336
BseYI	CCCAGC	1 cut(s)	329
Bsh1236I	CGCG	8 cut(s)	123, 276, 362, 628, 701, 714, 778, 817
BshFI	GGCC	3 cut(s)	334, 528, 761
BshNI	GGYRCC	2 cut(s)	736, 861
BsiSI	CCGG	4 cut(s)	250, 443, 458, 680
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	4 cut(s)	330, 448, 547, 619
BsmAI	GTCTC	2 cut(s)	61, 891
BsmBI	CGTCTC	1 cut(s)	891
BsmFI	GGGAC	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	334, 528, 761
Bsp120I	GGGCCC	1 cut(s)	332
Bsp1286I	GDGCHC	2 cut(s)	336, 371
Bsp143I	GATC	7 cut(s)	214, 465, 513, 588, 843, 1096, 1172
Bsp1720I	GCTNAGC	2 cut(s)	573, 606
BspANI	GGCC	3 cut(s)	334, 528, 761
BspCNI	CTCAG	3 cut(s)	586, 619, 901
BspFNI	CGCG	8 cut(s)	123, 276, 362, 628, 701, 714, 778, 817
BspLI	GGNNCC	6 cut(s)	216, 334, 335, 678, 738, 863
BspPI	GGATC	5 cut(s)	209, 222, 508, 583, 1180
BspT107I	GGYRCC	2 cut(s)	736, 861
BsrI	ACTGG	2 cut(s)	551, 620
BssECI	CCNNGG	4 cut(s)	523, 865, 1074, 1116
BssMI	GATC	7 cut(s)	214, 465, 513, 588, 843, 1096, 1172
BssNI	GRCGYC	2 cut(s)	555, 654
BssSI	CACGAG	1 cut(s)	911
BssT1I	CCWWGG	2 cut(s)	1074, 1116
Bst2BI	CACGAG	1 cut(s)	911
Bst2UI	CCWGG	2 cut(s)	866, 980
Bst6I	CTCTTC	3 cut(s)	43, 192, 803
BstACI	GRCGYC	2 cut(s)	555, 654
BstC8I	GCNNGC	2 cut(s)	108, 1146
BstDEI	CTNAG	4 cut(s)	139, 573, 606, 888
BstDSI	CCRYGG	1 cut(s)	523
BstF5I	GGATG	6 cut(s)	85, 393, 1047, 1075, 1099, 1189
BstFNI	CGCG	8 cut(s)	123, 276, 362, 628, 701, 714, 778, 817
BstHHI	GCGC	7 cut(s)	123, 628, 714, 746, 778, 817, 945
BstKTI	GATC	7 cut(s)	217, 468, 516, 591, 846, 1099, 1175
BstMAI	GTCTC	2 cut(s)	61, 891
BstMBI	GATC	7 cut(s)	214, 465, 513, 588, 843, 1096, 1172
BstMWI	GCNNNNNNNGC	5 cut(s)	276, 315, 340, 750, 784
BstNI	CCWGG	2 cut(s)	866, 980
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	4 cut(s)	441, 679, 864, 978
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	8 cut(s)	123, 276, 362, 628, 701, 714, 778, 817
BstV2I	GAAGAC	3 cut(s)	180, 192, 198
BstX2I	RGATCY	2 cut(s)	214, 465
BstXI	CCANNNNNNTGG	1 cut(s)	1081
BstYI	RGATCY	2 cut(s)	214, 465
BsuRI	GGCC	3 cut(s)	334, 528, 761
BtgI	CCRYGG	1 cut(s)	523
BtrI	CACGTC	2 cut(s)	417, 882
BtsCI	GGATG	6 cut(s)	85, 393, 1047, 1075, 1099, 1189
BtsIMutI	CAGTG	2 cut(s)	544, 613
Cac8I	GCNNGC	2 cut(s)	108, 1146
CfoI	GCGC	7 cut(s)	123, 628, 714, 746, 778, 817, 945
Cfr13I	GGNCC	3 cut(s)	332, 333, 677
CseI	GACGC	3 cut(s)	368, 544, 662
Csp6I	GTAC	4 cut(s)	793, 862, 907, 1156
CviAII	CATG	6 cut(s)	127, 493, 802, 893, 919, 947
CviQI	GTAC	4 cut(s)	793, 862, 907, 1156
DdeI	CTNAG	4 cut(s)	139, 573, 606, 888
DpnI	GATC	7 cut(s)	216, 467, 515, 590, 845, 1098, 1174
DpnII	GATC	7 cut(s)	214, 465, 513, 588, 843, 1096, 1172
DraI	TTTAAA	1 cut(s)	376
DriI	GACNNNNNGTC	1 cut(s)	883
EaeI	YGGCCR	2 cut(s)	526, 759
Eam1104I	CTCTTC	3 cut(s)	43, 192, 803
Eam1105I	GACNNNNNGTC	1 cut(s)	883
EarI	CTCTTC	3 cut(s)	43, 192, 803
EciI	GGCGGA	1 cut(s)	584
Eco130I	CCWWGG	2 cut(s)	1074, 1116
Eco24I	GRGCYC	2 cut(s)	336, 371
Eco47I	GGWCC	1 cut(s)	677
Eco57I	CTGAAG	1 cut(s)	1109
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	864, 978
EcoT14I	CCWWGG	2 cut(s)	1074, 1116
EcoT38I	GRGCYC	2 cut(s)	336, 371
ErhI	CCWWGG	2 cut(s)	1074, 1116
Esp3I	CGTCTC	1 cut(s)	891
FaeI	CATG	6 cut(s)	130, 496, 805, 896, 922, 950
FaiI	YATR	8 cut(s)	65, 86, 128, 494, 803, 894, 920, 948
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	6 cut(s)	126, 492, 801, 892, 918, 946
FauI	CCCGC	2 cut(s)	99, 490
FbaI	TGATCA	1 cut(s)	1096
Fnu4HI	GCNGC	6 cut(s)	124, 257, 277, 508, 624, 754
FokI	GGATG	6 cut(s)	92, 380, 1054, 1082, 1106, 1176
FriOI	GRGCYC	2 cut(s)	336, 371
Fsp4HI	GCNGC	6 cut(s)	124, 257, 277, 508, 624, 754
GlaI	GCGC	7 cut(s)	122, 627, 713, 745, 777, 816, 944
GluI	GCNGC	6 cut(s)	124, 257, 277, 508, 624, 754
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	334, 528, 761
HapII	CCGG	4 cut(s)	250, 443, 458, 680
HgaI	GACGC	3 cut(s)	368, 544, 662
HhaI	GCGC	7 cut(s)	123, 628, 714, 746, 778, 817, 945
Hin1I	GRCGYC	2 cut(s)	555, 654
Hin1II	CATG	6 cut(s)	130, 496, 805, 896, 922, 950
Hin6I	GCGC	7 cut(s)	121, 626, 712, 744, 776, 815, 943
HinP1I	GCGC	7 cut(s)	121, 626, 712, 744, 776, 815, 943
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HinfI	GANTC	2 cut(s)	240, 452
HpaII	CCGG	4 cut(s)	250, 443, 458, 680
HphI	GGTGA	4 cut(s)	715, 817, 1010, 1097
Hpy166II	GTNNAC	2 cut(s)	132, 351
Hpy188I	TCNGA	5 cut(s)	10, 315, 435, 568, 1140
Hpy188III	TCNNGA	2 cut(s)	77, 152
Hpy8I	GTNNAC	2 cut(s)	132, 351
HpyAV	CCTTC	6 cut(s)	440, 594, 655, 972, 1039, 1084
HpyCH4IV	ACGT	2 cut(s)	416, 881
HpyF10VI	GCNNNNNNNGC	5 cut(s)	276, 315, 340, 750, 784
HpyF3I	CTNAG	4 cut(s)	139, 573, 606, 888
HpySE526I	ACGT	2 cut(s)	416, 881
Hsp92I	GRCGYC	2 cut(s)	555, 654
Hsp92II	CATG	6 cut(s)	130, 496, 805, 896, 922, 950
HspAI	GCGC	7 cut(s)	121, 626, 712, 744, 776, 815, 943
KpnI	GGTACC	1 cut(s)	865
Ksp22I	TGATCA	1 cut(s)	1096
Kzo9I	GATC	7 cut(s)	214, 465, 513, 588, 843, 1096, 1172
LmnI	GCTCC	4 cut(s)	460, 615, 784, 1084
LweI	GCATC	5 cut(s)	796, 892, 1060, 1131, 1141
MaeII	ACGT	2 cut(s)	416, 881
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	7 cut(s)	216, 467, 515, 590, 845, 1098, 1174
MboI	GATC	7 cut(s)	214, 465, 513, 588, 843, 1096, 1172
MfeI	CAATTG	1 cut(s)	1034
MflI	RGATCY	2 cut(s)	214, 465
MhlI	GDGCHC	2 cut(s)	336, 371
MluCI	AATT	4 cut(s)	972, 1020, 1034, 1180
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	1 cut(s)	546
MseI	TTAA	2 cut(s)	116, 375
MspI	CCGG	4 cut(s)	250, 443, 458, 680
MspR9I	CCNGG	4 cut(s)	443, 681, 866, 980
MunI	CAATTG	1 cut(s)	1034
Mva1269I	GAATGC	1 cut(s)	94
MvaI	CCWGG	2 cut(s)	866, 980
MvnI	CGCG	8 cut(s)	123, 276, 362, 628, 701, 714, 778, 817
MwoI	GCNNNNNNNGC	5 cut(s)	276, 315, 340, 750, 784
NciI	CCSGG	2 cut(s)	443, 681
NdeII	GATC	7 cut(s)	214, 465, 513, 588, 843, 1096, 1172
NlaIII	CATG	6 cut(s)	130, 496, 805, 896, 922, 950
NlaIV	GGNNCC	6 cut(s)	216, 334, 335, 678, 738, 863
NmuCI	GTSAC	1 cut(s)	518
NspI	RCATGY	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	6 cut(s)	49, 165, 168, 174, 295, 648
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	452
PflFI	GACNNNGTC	2 cut(s)	72, 554
PfoI	TCCNGGA	1 cut(s)	679
PkrI	GCNGC	6 cut(s)	125, 258, 278, 509, 625, 755
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	864, 978
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	2 cut(s)	864, 978
PspN4I	GGNNCC	6 cut(s)	216, 334, 335, 678, 738, 863
PspOMI	GGGCCC	1 cut(s)	332
PspPI	GGNCC	3 cut(s)	332, 333, 677
PsuI	RGATCY	2 cut(s)	214, 465
PsyI	GACNNNGTC	2 cut(s)	72, 554
RsaI	GTAC	4 cut(s)	794, 863, 908, 1157
RsaNI	GTAC	4 cut(s)	793, 862, 907, 1156
SaqAI	TTAA	2 cut(s)	116, 375
SatI	GCNGC	6 cut(s)	124, 257, 277, 508, 624, 754
Sau3AI	GATC	7 cut(s)	214, 465, 513, 588, 843, 1096, 1172
Sau96I	GGNCC	3 cut(s)	332, 333, 677
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	4 cut(s)	443, 681, 866, 980
SduI	GDGCHC	2 cut(s)	336, 371
SfaNI	GCATC	5 cut(s)	796, 892, 1060, 1131, 1141
SinI	GGWCC	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	1160
SmoI	CTYRAG	1 cut(s)	1160
Sse9I	AATT	4 cut(s)	972, 1020, 1034, 1180
StyD4I	CCNGG	4 cut(s)	441, 679, 864, 978
StyI	CCWWGG	2 cut(s)	1074, 1116
TaiI	ACGT	2 cut(s)	419, 884
TaqI	TCGA	4 cut(s)	15, 298, 587, 651
TasI	AATT	4 cut(s)	972, 1020, 1034, 1180
TauI	GCSGC	6 cut(s)	126, 259, 279, 510, 626, 756
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	2 cut(s)	116, 375
Tru9I	TTAA	2 cut(s)	116, 375
TscAI	CASTG	2 cut(s)	551, 620
TseFI	GTSAC	1 cut(s)	518
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	5 cut(s)	17, 101, 198, 460, 1058
TspGWI	ACGGA	2 cut(s)	506, 552
TspRI	CASTG	2 cut(s)	551, 620
Tth111I	GACNNNGTC	2 cut(s)	72, 554
VpaK11BI	GGWCC	1 cut(s)	677
XceI	RCATGY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.