Rh6CG494200

Carbohydrate esterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003321
Physical Location & Seq
Forward (+)
66006478 .. 66007054
577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG494200.1

Sequence Viewer

Length: 501 bp
ATGGCTTTTGCCAACAAGGTCCTCCAAGCCAAAGGCTCGGCTATGGGAGTTTTGGGTCTGGTTCCTTGCGCTGTGGGCGGGACTAGAATCAGCAAGTGGGCTCGAGGGACTCAGTTGTATAATGAGTTGGTGAGACGAGCCAGCGACTCGGTGAAGGCAGGAGGAACTATCCGAGCAATTTTATGGTACCAGGGAGAGAGTGGCACTGTGAATAGAGCCGATGCGAAGGGATATAAAGGGAGTTTTGTGAGGCTTATAACTGACCTACACTCCGATCTCAAAAGCCCTAACCTTCCTGTTATTCAGGTAGCACTGGCATCAGGAGAAGGTCAGTTCATAGATATAGTGAGGAAAGCACAGCTGGAAACGAAGCTGCCTAATGTGAATTGTGTCGATGCTGAAGGATTGCCTTTGAAACCGGATAATCTCCACCTCACTACCATATCGGAGGTCCACCTGGGTATCAAGCTAGCAAATTCTTTTCTGGCTTCCTATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SASA

Protein Analysis

166

Amino Acids

17.72

Weight (kDa)

9.48

Isoelectric Point (pI)

17.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SASA PF03629 1 - 162 1.2e-56 Carbohydrate esterase, sialic acid-specific acetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
Acc65I GGTACC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 186
AciI CCGC 1 cut(s) 78
AcsI RAATTY 1 cut(s) 475
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 1 cut(s) 188
AgsI TTSAA 1 cut(s) 415
AjnI CCWGG 2 cut(s) 189, 456
AluBI AGCT 3 cut(s) 361, 373, 469
AluI AGCT 3 cut(s) 361, 373, 469
Alw26I GTCTC 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 373
ApoI RAATTY 1 cut(s) 475
Asp718I GGTACC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 19, 451
AsuHPI GGTGA 2 cut(s) 142, 163
AsuNHI GCTAGC 1 cut(s) 469
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 2 cut(s) 19, 451
BaeI ACNNNNGTAYC 2 cut(s) 445, 478
BanI GGYRCC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 360
BciT130I CCWGG 2 cut(s) 191, 458
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 2 cut(s) 84, 470
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 2 cut(s) 191, 458
Bme18I GGWCC 2 cut(s) 19, 451
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 19, 451
BmiI GGNNCC 2 cut(s) 63, 188
BmrFI CCNGG 2 cut(s) 191, 458
BmsI GCATC 3 cut(s) 211, 326, 385
BmtI GCTAGC 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 190, 457
BsaWI WCCGGW 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse1I ACTGG 1 cut(s) 318
BseBI CCWGG 2 cut(s) 191, 458
BseDI CCNNGG 2 cut(s) 190, 457
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 360
BshNI GGYRCC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 419
BslFI GGGAC 2 cut(s) 94, 121
BsmAI GTCTC 1 cut(s) 127
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 2 cut(s) 94, 121
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 63, 188
BspOI GCTAGC 1 cut(s) 473
BspT107I GGYRCC 1 cut(s) 186
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 190, 457
BssMI GATC 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 191, 458
Bst4CI ACNGT 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 142, 471
BstDEI CTNAG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 2 cut(s) 191, 458
BstSCI CCNGG 2 cut(s) 189, 456
BstV1I GCAGC 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 204, 311
Cac8I GCNNGC 2 cut(s) 142, 471
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 19, 451
Csp6I GTAC 1 cut(s) 187
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 103
Eco47I GGWCC 2 cut(s) 19, 451
Eco57I CTGAAG 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 189, 456
EcoT38I GRGCYC 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 127
FaiI YATR 9 cut(s) 44, 120, 184, 234, 257, 338, 344, 443, 495
FaqI GGGAC 2 cut(s) 94, 121
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 2 cut(s) 84, 470
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 374
HapII CCGG 1 cut(s) 419
HhaI GCGC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 3 cut(s) 87, 109, 146
HpaII CCGG 1 cut(s) 419
HphI GGTGA 2 cut(s) 142, 163
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 3 cut(s) 173, 274, 448
Hpy188III TCNNGA 1 cut(s) 321
Hpy8I GTNNAC 1 cut(s) 454
HpyAV CCTTC 5 cut(s) 148, 220, 302, 320, 395
HpyCH4III ACNGT 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 111
HspAI GCGC 1 cut(s) 69
KpnI GGTACC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 274
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 3 cut(s) 211, 326, 385
MaeI CTAG 2 cut(s) 84, 470
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 3 cut(s) 177, 385, 475
MlyI GAGTC 2 cut(s) 103, 140
MnlI CCTC 7 cut(s) 32, 98, 155, 243, 342, 442, 443
MseI TTAA 1 cut(s) 499
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 2 cut(s) 191, 458
MvaI CCWGG 2 cut(s) 191, 458
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 1 cut(s) 274
NheI GCTAGC 1 cut(s) 469
NlaIV GGNNCC 2 cut(s) 63, 188
NmeAIII GCCGAG 1 cut(s) 17
PaeR7I CTCGAG 1 cut(s) 102
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 2 cut(s) 103, 140
PpsI GAGTC 2 cut(s) 103, 140
PpuMI RGGWCCY 1 cut(s) 19
PsiI TTATAA 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 2 cut(s) 189, 456
PspGI CCWGG 2 cut(s) 189, 456
PspN4I GGNNCC 2 cut(s) 63, 188
PspPI GGNCC 2 cut(s) 19, 451
PspPPI RGGWCCY 1 cut(s) 19
PspXI VCTCGAGB 1 cut(s) 102
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 499
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 2 cut(s) 19, 451
SchI GAGTC 2 cut(s) 103, 140
ScrFI CCNGG 2 cut(s) 191, 458
SduI GDGCHC 1 cut(s) 103
SfaNI GCATC 3 cut(s) 211, 326, 385
Sfr274I CTCGAG 1 cut(s) 102
SinI GGWCC 2 cut(s) 19, 451
SlaI CTCGAG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 3 cut(s) 177, 385, 475
SsiI CCGC 1 cut(s) 78
SspMI CTAG 2 cut(s) 84, 470
StyD4I CCNGG 2 cut(s) 189, 456
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 103, 393
TasI AATT 3 cut(s) 177, 385, 475
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 499
Tru9I TTAA 1 cut(s) 499
TscAI CASTG 2 cut(s) 211, 318
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 325
TspRI CASTG 2 cut(s) 211, 318
VpaK11BI GGWCC 2 cut(s) 19, 451
XapI RAATTY 1 cut(s) 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 102
XspI CTAG 2 cut(s) 84, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.