Rh6CG494100

Carbohydrate esterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003321
Physical Location & Seq
Forward (+)
66006169 .. 66006396
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG494100.1

Sequence Viewer

Length: 228 bp
ATGGCGACGAATGCCATGACTGCCATCTTAAAGTTGGTACAGCTATTCTGTGCCGTCCAAACGACCCAATTCAATTCAGGCTCCTCTGTTTCTCCTCCCGGGAACATCTTCATTCTCGCCGGTCAGAGCAACATGGCCGGAAGAGGCTGCGTCAGCGGCGGTAAGTGGGACGGCAACGTTCGTCCCGAGTGCACACCGACCCCGTCAATTCTCAGACTGAGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SASA

Protein Analysis

75

Amino Acids

7.77

Weight (kDa)

9.15

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SASA PF03629 34 - 75 1.2e-12 Carbohydrate esterase, sialic acid-specific acetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 156, 159
AclI AACGTT 1 cut(s) 177
AcoI YGGCCR 1 cut(s) 135
AfaI GTAC 1 cut(s) 39
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw21I GWGCWC 1 cut(s) 194
Alw44I GTGCAC 1 cut(s) 190
Ama87I CYCGRG 2 cut(s) 98, 185
AoxI GGCC 1 cut(s) 135
ApaLI GTGCAC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 107
AsuC2I CCSGG 2 cut(s) 99, 100
AvaI CYCGRG 2 cut(s) 98, 185
BaeGI GKGCMC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 32
BceAI ACGGC 2 cut(s) 38, 187
BcnI CCSGG 2 cut(s) 99, 100
BisI GCNGC 2 cut(s) 148, 157
BlsI GCNGC 2 cut(s) 149, 158
Bme1390I CCNGG 2 cut(s) 99, 100
BmeT110I CYCGRG 2 cut(s) 98, 185
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 2 cut(s) 99, 100
BpuMI CCSGG 2 cut(s) 99, 100
BsaJI CCNNGG 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 98
BseMII CTCAG 2 cut(s) 209, 226
BseRI GAGGAG 2 cut(s) 73, 84
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 1 cut(s) 134
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 194
BsiHKCI CYCGRG 2 cut(s) 98, 185
BsiSI CCGG 3 cut(s) 99, 120, 138
BslFI GGGAC 2 cut(s) 168, 182
BsmFI GGGAC 2 cut(s) 168, 182
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 1 cut(s) 137
BsoBI CYCGRG 2 cut(s) 98, 185
Bsp1286I GDGCHC 1 cut(s) 194
BspACI CCGC 2 cut(s) 156, 159
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 2 cut(s) 210, 225
BspLI GGNNCC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 136
BstDEI CTNAG 2 cut(s) 212, 218
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 153, 156
BstSCI CCNGG 2 cut(s) 97, 98
BstSLI GKGCMC 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 119
Cfr9I CCCGGG 1 cut(s) 98
CseI GACGC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 38
CviAII CATG 2 cut(s) 16, 133
CviJI RGCY 4 cut(s) 43, 81, 137, 147
CviKI_1 RGCY 4 cut(s) 43, 81, 137, 147
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 2 cut(s) 212, 218
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
Eco88I CYCGRG 2 cut(s) 98, 185
FaeI CATG 2 cut(s) 19, 136
FaiI YATR 2 cut(s) 17, 134
FaqI GGGAC 2 cut(s) 168, 182
FatI CATG 2 cut(s) 15, 132
Fnu4HI GCNGC 2 cut(s) 148, 157
Fsp4HI GCNGC 2 cut(s) 148, 157
GluI GCNGC 2 cut(s) 148, 157
HaeIII GGCC 1 cut(s) 137
HapII CCGG 3 cut(s) 99, 120, 138
HgaI GACGC 1 cut(s) 139
Hin1II CATG 2 cut(s) 19, 136
HpaII CCGG 3 cut(s) 99, 120, 138
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 126, 215
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 192
Hpy99I CGWCG 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 153, 156
HpyF3I CTNAG 2 cut(s) 212, 218
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 2 cut(s) 19, 136
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 4 cut(s) 63, 112, 133, 151
Lsp1109I GCAGC 1 cut(s) 134
MaeII ACGT 1 cut(s) 177
MboII GAAGA 2 cut(s) 100, 153
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 3 cut(s) 68, 73, 207
MnlI CCTC 3 cut(s) 94, 105, 137
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 2 cut(s) 29, 226
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 3 cut(s) 99, 120, 138
MspR9I CCNGG 2 cut(s) 99, 100
Mva1269I GAATGC 1 cut(s) 16
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 153, 156
NciI CCSGG 2 cut(s) 99, 100
NlaIII CATG 2 cut(s) 19, 136
NlaIV GGNNCC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 107
PflFI GACNNNGTC 1 cut(s) 202
PkrI GCNGC 2 cut(s) 149, 158
Psp1406I AACGTT 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 202
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SaqAI TTAA 2 cut(s) 29, 226
SatI GCNGC 2 cut(s) 148, 157
ScrFI CCNGG 2 cut(s) 99, 100
SduI GDGCHC 1 cut(s) 194
SetI ASST 2 cut(s) 45, 180
SmaI CCCGGG 1 cut(s) 100
Sse9I AATT 3 cut(s) 68, 73, 207
SsiI CCGC 2 cut(s) 156, 159
StyD4I CCNGG 2 cut(s) 97, 98
TaiI ACGT 1 cut(s) 180
TasI AATT 3 cut(s) 68, 73, 207
TauI GCSGC 1 cut(s) 159
Tru1I TTAA 2 cut(s) 29, 226
Tru9I TTAA 2 cut(s) 29, 226
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 100
TspMI CCCGGG 1 cut(s) 98
Tth111I GACNNNGTC 1 cut(s) 202
VneI GTGCAC 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XmaI CCCGGG 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.