Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003321

Physical Location & Seq

Genomic Coordinates Reverse (-)

60258219 .. 60260493

Gene Structure 2275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGTTAGGCTCATTGAGAATGTGCGCCATGACCTTGCTGTGCCTTCACTTCCAATAATCCAGGTGGCTATTTGTTCTGGTGATGAGAAGTTCTTGGAGAAAATTAGGGAGGTTCAATTGGGGTTGAAGGTTGAGAATGTTGTGTGTGTGGATGCCAAGGGATTGGAGCTGAAAGATGATCATCTTCACCTGACTACCAAGGCTCAAGTTCAGTTGGGTCAGATGCTTGCTGATGCTTACCTCAAGCATTTTGGATCAGCTAATTCCCATCATCCTGCCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SASA

Protein Analysis

94

Amino Acids

10.42

Weight (kDa)

6.27

Isoelectric Point (pI)

13.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SASA	PF03629	1 - 82	2.4e-26	Carbohydrate esterase, sialic acid-specific acetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34215 AT4G34215
fragaria_vesca	FvH4_2g05290 FvH4_2g05290 FvH4_2g33790
malus_domestica	MD15G1076800.v1.1
prunus_persica	Prupe.1G430200_v2.0.a1 Prupe.8G134400_v2.0.a1 Prupe.8G134400_v2.0.a1
pyrus_communis	pycom10g08260 pycom15g07160
rosa_chinensis	RchiOBHm_Chr6g0255411 RchiOBHm_Chr6g0255421
rosa_laevigata	RLG00000010621 RLG00000014839 RLG00000014840
rosa_multiflora	Rmu_sc0002360.1_g000013 Rmu_sc0015750.1_g000001 Rmu_sc0015750.1_g000003
rosa_roxburghii	Rroxscaffold_7G00210000 Rroxscaffold_7G00210010
rosa_rugosa	Rorug05G0558400 Rorug05G0558500 Rorug05G0558600
rosa_samantha	Rh6AG075100 Rh6AG075200 Rh6BG068500 Rh6BG068600 Rh6BG069000 Rh6CG068100 Rh6CG068200 Rh6CG494100 Rh6CG494200 Rh6DG064800 Rh6DG065000
rosa_wichuraiana	Rw6G006630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	116, 127
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	2 cut(s)	169, 260
AluI	AGCT	2 cut(s)	169, 260
AlwI	GGATC	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	92, 179
BccI	CCATC	1 cut(s)	276
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	3 cut(s)	142, 213, 223
BpuEI	CTTGAG	2 cut(s)	189, 227
BsaBI	GATNNNNATC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	156, 198
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	156, 198
BseGI	GGATG	2 cut(s)	157, 271
BseJI	GATNNNNATC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	178, 254
BspPI	GGATC	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	156, 198
BssMI	GATC	2 cut(s)	178, 254
BssT1I	CCWWGG	2 cut(s)	156, 198
Bst2UI	CCWGG	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	157, 271
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	2 cut(s)	181, 257
BstMBI	GATC	2 cut(s)	178, 254
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	157, 271
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	1 cut(s)	27
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	5 cut(s)	10, 68, 169, 203, 260
CviKI_1	RGCY	5 cut(s)	10, 68, 169, 203, 260
DpnI	GATC	2 cut(s)	180, 256
DpnII	GATC	2 cut(s)	178, 254
Eco130I	CCWWGG	2 cut(s)	156, 198
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	156, 198
ErhI	CCWWGG	2 cut(s)	156, 198
FaeI	CATG	1 cut(s)	32
FaiI	YATR	1 cut(s)	30
FatI	CATG	1 cut(s)	28
FbaI	TGATCA	1 cut(s)	178
FokI	GGATG	2 cut(s)	164, 258
GlaI	GCGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	32
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HphI	GGTGA	2 cut(s)	92, 179
Hpy188I	TCNGA	1 cut(s)	222
HpyAV	CCTTC	2 cut(s)	54, 121
Hsp92II	CATG	1 cut(s)	32
HspAI	GCGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	178, 254
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	4 cut(s)	47, 63, 74, 203
LweI	GCATC	3 cut(s)	142, 213, 223
MalI	GATC	2 cut(s)	180, 256
MboI	GATC	2 cut(s)	178, 254
MboII	GAAGA	1 cut(s)	176
MfeI	CAATTG	1 cut(s)	116
MluCI	AATT	3 cut(s)	102, 116, 262
MnlI	CCTC	2 cut(s)	103, 251
MspR9I	CCNGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	62
NdeII	GATC	2 cut(s)	178, 254
NlaIII	CATG	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	178, 254
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	8 cut(s)	36, 66, 114, 132, 171, 192, 243, 262
SfaNI	GCATC	3 cut(s)	142, 213, 223
SmlI	CTYRAG	2 cut(s)	204, 242
SmoI	CTYRAG	2 cut(s)	204, 242
Sse9I	AATT	3 cut(s)	102, 116, 262
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	156, 198
TasI	AATT	3 cut(s)	102, 116, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.