Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003321

Physical Location & Seq

Genomic Coordinates Reverse (-)

74755682 .. 74757121

Gene Structure 1440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0558400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCTCTCCGCAATGCACTTGGAAAGCTGACCAGGACTTTGAGGTTCATTACAACAGAAGCAACTGGACATGACATTGGGAAGCTCAACATAACATTGAGGAGGTTCAACACGATTGGGGCATACAAACATGATGTTGAAAAGCTCACGACGAGAAGGTTCAACATAACCGGGGAATACAAACATGATGGGAAGCTCATCAGGCACACTAACCTGAGAAGGTTCAATACCATTGGGGAAAATGAACTTGATGACAAGGAAGATAGGTACAAATTCTGGGGTCCCTACCTGAGTGACAAAGTCAGGGAGCAAGGCAAAGATCAATGCTGGGCAATAGGGCCTGCCGAGTGCCTAGAAGCCATCTACAAGCTGTACACTGGGGAGACGGTGGTGGTATCTCCACAGCATATACTAGATAGGGCTCCAAGAGCGAAGGATCAAAGTAAACTGGAGAAGTTTGAAAAGGGGGAGGGCTCAGGGGGAGGCTCGGTTATGGATGCATTCAAATTCATGGAAACTGATGGAGTTGCCCTTGAATCAGCCTGGCCCCATGCAAAGGGACCCATCAATGAGGAAGGAAGGAAAATTAAAATAGGAGGATACAGAGTGGTGAAGGGAAGAACAAAAATAAAGAAAGTCCTCAAGCTACACCCATCTGTAGGCTGCATTGCAGTTCATCCCATTGAACAATTTTACTCGGGTGACATAATTGAATCAAGACACTTAGAATTTTTTGAGACAGTCAAATGGGATGATAATAAGTTCCCTATGTGTGAAGTTCAGAATTTTTCTTGTCCATACATCAAGAAGCATGTAGTGGGATTCTGTCACTACTGTGGATACACCAGTGGGTTTCACACAGTTGTGCTGAGTGGATACGACACGCGAACTGCTGGCAAACACCACTGGATATTCAGAAACACCAGGGGGACACAGTGGGGGGTCAACGGCTATGGAATGATGAAAATGACTGAATCAGAAGAAGATATTGGAGACAACGAGGTTGATGAGACAGTAAGAAAGGGGCTGCCACTTGGCCTATTGAACATTGAGCAATTTGCTGTGTATCCTATTCCACACCACAGTTGGAAGAAACGGGAGGGACTTGAATGGAAGCAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SASA

Protein Analysis

374

Amino Acids

42.92

Weight (kDa)

8.93

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	100 - 240	4.9e-07	Papain family cysteine protease
Peptidase_C1	PF00112	278 - 327	2.8e-06	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34215 AT4G34215
fragaria_vesca	FvH4_2g05290 FvH4_2g05290 FvH4_2g33790
malus_domestica	MD15G1076800.v1.1
prunus_persica	Prupe.1G430200_v2.0.a1 Prupe.8G134400_v2.0.a1 Prupe.8G134400_v2.0.a1
pyrus_communis	pycom10g08260 pycom15g07160
rosa_chinensis	RchiOBHm_Chr6g0255411 RchiOBHm_Chr6g0255421
rosa_laevigata	RLG00000010621 RLG00000014839 RLG00000014840
rosa_multiflora	Rmu_sc0002360.1_g000013 Rmu_sc0015750.1_g000001 Rmu_sc0015750.1_g000003
rosa_roxburghii	Rroxscaffold_7G00210000 Rroxscaffold_7G00210010
rosa_rugosa	Rorug05G0558400 Rorug05G0558500 Rorug05G0558600
rosa_samantha	Rh6AG075100 Rh6AG075200 Rh6BG068500 Rh6BG068600 Rh6BG069000 Rh6CG068100 Rh6CG068200 Rh6CG494100 Rh6CG494200 Rh6DG064800 Rh6DG065000
rosa_wichuraiana	Rw6G006630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	886
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	1 cut(s)	444
AcsI	RAATTY	4 cut(s)	272, 506, 728, 784
AfaI	GTAC	2 cut(s)	269, 374
AfiI	CCNNNNNNNGG	2 cut(s)	556, 659
AjnI	CCWGG	3 cut(s)	32, 542, 923
AjuI	GAANNNNNNNTTGG	2 cut(s)	972, 1004
AleI	CACNNNNGTG	2 cut(s)	834, 863
AluBI	AGCT	6 cut(s)	28, 85, 145, 196, 370, 646
AluI	AGCT	6 cut(s)	28, 85, 145, 196, 370, 646
Alw26I	GTCTC	4 cut(s)	377, 731, 987, 1004
AlwI	GGATC	1 cut(s)	444
Ama87I	CYCGRG	1 cut(s)	697
AoxI	GGCC	3 cut(s)	338, 545, 1036
ApeKI	GCWGC	2 cut(s)	663, 1027
ApoI	RAATTY	4 cut(s)	272, 506, 728, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
AspS9I	GGNCC	4 cut(s)	281, 338, 546, 560
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	622, 713
AvaI	CYCGRG	1 cut(s)	697
AvaII	GGWCC	2 cut(s)	281, 560
BaeI	ACNNNNGTAYC	2 cut(s)	832, 865
BanII	GRGCYC	2 cut(s)	424, 476
BarI	GAAGNNNNNNTAC	2 cut(s)	211, 243
BbvI	GCAGC	2 cut(s)	650, 1014
BccI	CCATC	5 cut(s)	182, 368, 515, 572, 661
BceAI	ACGGC	1 cut(s)	964
BciT130I	CCWGG	3 cut(s)	34, 544, 925
BciVI	GTATCC	4 cut(s)	593, 833, 869, 1077
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	4 cut(s)	377, 731, 987, 1004
BfaI	CTAG	2 cut(s)	353, 413
BfmI	CTRYAG	1 cut(s)	657
BfuI	GTATCC	4 cut(s)	593, 833, 869, 1077
BisI	GCNGC	2 cut(s)	664, 1028
BlsI	GCNGC	2 cut(s)	665, 1029
Bme1390I	CCNGG	4 cut(s)	34, 172, 544, 925
Bme18I	GGWCC	2 cut(s)	281, 560
BmeT110I	CYCGRG	1 cut(s)	697
BmgT120I	GGNCC	4 cut(s)	281, 338, 546, 560
BmiI	GGNNCC	6 cut(s)	282, 283, 423, 548, 561, 562
BmrFI	CCNGG	4 cut(s)	34, 172, 544, 925
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	487
BmuI	ACTGGG	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	626
BpuMI	CCSGG	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	171, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 659
Bse1I	ACTGG	5 cut(s)	70, 382, 453, 846, 911
Bse3DI	GCAATG	2 cut(s)	19, 666
BseBI	CCWGG	3 cut(s)	34, 544, 925
BseDI	CCNNGG	2 cut(s)	171, 924
BseGI	GGATG	3 cut(s)	502, 676, 757
BseLI	CCNNNNNNNGG	2 cut(s)	556, 659
BseMI	GCAATG	2 cut(s)	19, 666
BseMII	CTCAG	4 cut(s)	206, 281, 489, 860
BseNI	ACTGG	5 cut(s)	70, 382, 453, 846, 911
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	650, 1014
BseYI	CCCAGC	1 cut(s)	327
Bsh1236I	CGCG	1 cut(s)	886
BshFI	GGCC	3 cut(s)	340, 547, 1038
BsiHKCI	CYCGRG	1 cut(s)	697
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	4 cut(s)	267, 573, 943, 1116
BslI	CCNNNNNNNGG	2 cut(s)	556, 659
BsmAI	GTCTC	4 cut(s)	377, 731, 987, 1004
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	4 cut(s)	267, 573, 943, 1116
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	3 cut(s)	340, 547, 1038
BsoBI	CYCGRG	1 cut(s)	697
Bsp1286I	GDGCHC	2 cut(s)	424, 476
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	319, 436
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	3 cut(s)	340, 547, 1038
BspCNI	CTCAG	4 cut(s)	207, 282, 488, 861
BspFNI	CGCG	1 cut(s)	886
BspLI	GGNNCC	6 cut(s)	282, 283, 423, 548, 561, 562
BspPI	GGATC	1 cut(s)	444
BsrDI	GCAATG	2 cut(s)	19, 666
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	5 cut(s)	70, 382, 453, 846, 911
BssECI	CCNNGG	2 cut(s)	171, 924
BssMI	GATC	2 cut(s)	319, 436
Bst2UI	CCWGG	3 cut(s)	34, 544, 925
Bst4CI	ACNGT	7 cut(s)	388, 742, 836, 862, 936, 1015, 1085
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	2 cut(s)	342, 895
BstDEI	CTNAG	5 cut(s)	215, 290, 475, 724, 869
BstF5I	GGATG	3 cut(s)	502, 676, 757
BstFNI	CGCG	1 cut(s)	886
BstKTI	GATC	2 cut(s)	322, 439
BstMAI	GTCTC	4 cut(s)	377, 731, 987, 1004
BstMBI	GATC	2 cut(s)	319, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 428
BstNI	CCWGG	3 cut(s)	34, 544, 925
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	4 cut(s)	32, 170, 542, 923
BstSFI	CTRYAG	1 cut(s)	657
BstUI	CGCG	1 cut(s)	886
BstV1I	GCAGC	2 cut(s)	650, 1014
BsuI	GTATCC	4 cut(s)	593, 833, 869, 1077
BsuRI	GGCC	3 cut(s)	340, 547, 1038
BtsCI	GGATG	3 cut(s)	502, 676, 757
BtsIMutI	CAGTG	4 cut(s)	375, 853, 904, 941
Cac8I	GCNNGC	2 cut(s)	342, 895
Cfr13I	GGNCC	4 cut(s)	281, 338, 546, 560
Csp6I	GTAC	2 cut(s)	268, 373
CviAII	CATG	6 cut(s)	71, 131, 185, 511, 551, 812
CviQI	GTAC	2 cut(s)	268, 373
DdeI	CTNAG	5 cut(s)	215, 290, 475, 724, 869
DpnI	GATC	2 cut(s)	321, 438
DpnII	GATC	2 cut(s)	319, 436
Eco24I	GRGCYC	2 cut(s)	424, 476
Eco47I	GGWCC	2 cut(s)	281, 560
Eco88I	CYCGRG	1 cut(s)	697
EcoO109I	RGGNCCY	3 cut(s)	281, 338, 560
EcoRII	CCWGG	3 cut(s)	32, 542, 923
EcoT22I	ATGCAT	1 cut(s)	502
EcoT38I	GRGCYC	2 cut(s)	424, 476
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	6 cut(s)	74, 134, 188, 514, 554, 815
FaqI	GGGAC	4 cut(s)	267, 573, 943, 1116
FatI	CATG	6 cut(s)	70, 130, 184, 510, 550, 811
Fnu4HI	GCNGC	2 cut(s)	664, 1028
FokI	GGATG	3 cut(s)	509, 663, 764
FriOI	GRGCYC	2 cut(s)	424, 476
Fsp4HI	GCNGC	2 cut(s)	664, 1028
FspBI	CTAG	2 cut(s)	353, 413
GluI	GCNGC	2 cut(s)	664, 1028
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	3 cut(s)	340, 547, 1038
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	6 cut(s)	74, 134, 188, 514, 554, 815
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HinfI	GANTC	4 cut(s)	536, 713, 822, 974
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	2 cut(s)	622, 713
Hpy166II	GTNNAC	3 cut(s)	375, 446, 946
Hpy188I	TCNGA	3 cut(s)	783, 917, 979
Hpy188III	TCNNGA	3 cut(s)	148, 717, 805
Hpy8I	GTNNAC	3 cut(s)	375, 446, 946
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	6 cut(s)	150, 213, 427, 569, 573, 607
HpyCH4III	ACNGT	7 cut(s)	388, 742, 836, 862, 936, 1015, 1085
HpyCH4V	TGCA	5 cut(s)	17, 500, 554, 666, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 428
HpyF3I	CTNAG	5 cut(s)	215, 290, 475, 724, 869
Hsp92II	CATG	6 cut(s)	74, 134, 188, 514, 554, 815
KflI	GGGWCCC	2 cut(s)	281, 560
Kzo9I	GATC	2 cut(s)	319, 436
LmnI	GCTCC	2 cut(s)	307, 427
Lsp1109I	GCAGC	2 cut(s)	650, 1014
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	2 cut(s)	353, 413
MaeIII	GTNAC	3 cut(s)	293, 701, 827
MalI	GATC	2 cut(s)	321, 438
MboI	GATC	2 cut(s)	319, 436
MboII	GAAGA	5 cut(s)	272, 630, 992, 995, 1102
MhlI	GDGCHC	2 cut(s)	424, 476
MluCI	AATT	8 cut(s)	272, 506, 585, 689, 708, 728, 784, 1055
MmeI	TCCRAC	1 cut(s)	1067
Mph1103I	ATGCAT	1 cut(s)	502
MseI	TTAA	1 cut(s)	588
MslI	CAYNNNNRTG	2 cut(s)	834, 863
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	4 cut(s)	34, 172, 544, 925
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	3 cut(s)	34, 544, 925
MvnI	CGCG	1 cut(s)	886
MwoI	GCNNNNNNNGC	2 cut(s)	202, 428
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	2 cut(s)	319, 436
NlaIII	CATG	6 cut(s)	74, 134, 188, 514, 554, 815
NlaIV	GGNNCC	6 cut(s)	282, 283, 423, 548, 561, 562
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	3 cut(s)	293, 701, 827
NsiI	ATGCAT	1 cut(s)	502
NspI	RCATGY	1 cut(s)	815
OliI	CACNNNNGTG	2 cut(s)	834, 863
PctI	GAATGC	1 cut(s)	500
PfeI	GAWTC	4 cut(s)	536, 713, 822, 974
PflFI	GACNNNGTC	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	665, 1029
PpuMI	RGGWCCY	2 cut(s)	281, 560
Psp5II	RGGWCCY	2 cut(s)	281, 560
Psp6I	CCWGG	3 cut(s)	32, 542, 923
PspFI	CCCAGC	1 cut(s)	327
PspGI	CCWGG	3 cut(s)	32, 542, 923
PspN4I	GGNNCC	6 cut(s)	282, 283, 423, 548, 561, 562
PspPI	GGNCC	4 cut(s)	281, 338, 546, 560
PspPPI	RGGWCCY	2 cut(s)	281, 560
PsyI	GACNNNGTC	1 cut(s)	299
RsaI	GTAC	2 cut(s)	269, 374
RsaNI	GTAC	2 cut(s)	268, 373
RseI	CAYNNNNRTG	2 cut(s)	834, 863
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	2 cut(s)	664, 1028
Sau3AI	GATC	2 cut(s)	319, 436
Sau96I	GGNCC	4 cut(s)	281, 338, 546, 560
ScrFI	CCNGG	4 cut(s)	34, 172, 544, 925
SduI	GDGCHC	2 cut(s)	424, 476
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	1 cut(s)	657
SinI	GGWCC	2 cut(s)	281, 560
SmiMI	CAYNNNNRTG	2 cut(s)	834, 863
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	8 cut(s)	272, 506, 585, 689, 708, 728, 784, 1055
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	2 cut(s)	353, 413
StyD4I	CCNGG	4 cut(s)	32, 170, 542, 923
TaaI	ACNGT	7 cut(s)	388, 742, 836, 862, 936, 1015, 1085
TasI	AATT	8 cut(s)	272, 506, 585, 689, 708, 728, 784, 1055
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	4 cut(s)	536, 713, 822, 974
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	4 cut(s)	382, 853, 911, 941
TseFI	GTSAC	3 cut(s)	293, 701, 827
TseI	GCWGC	2 cut(s)	663, 1027
Tsp45I	GTSAC	3 cut(s)	293, 701, 827
TspDTI	ATGAA	5 cut(s)	37, 258, 499, 665, 977
TspRI	CASTG	4 cut(s)	382, 853, 911, 941
Tth111I	GACNNNGTC	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	281, 560
XapI	RAATTY	4 cut(s)	272, 506, 728, 784
XceI	RCATGY	1 cut(s)	815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1083
XspI	CTAG	2 cut(s)	353, 413
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.