Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015750.1

Orthogroup ID

OG0003321

Physical Location & Seq

Genomic Coordinates Forward (+)

227 .. 1924

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015750.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atgaactccgaactcgacccaactcgtaatccattctcttctcgttttcctcgttcaaggcttatgagactttgtctggatgatatgaatgcctctgctcaaaggcgggctttgttaatgcgcggcatattgactctcttagctcactatctcgacaacgacgacgacgacgaagatgacgaagacgaagaggaggaggacgaggatccccaagaacaaggtttatattctgattctgattcttctgacgatgaatttatgctcttgtgcattgttccactactattcatagccggagaacaagacccactcgctaaccggaagcggcgacgctcaactactcgaaacccaaacgacgacgttccgaaaaaggcccacgctggtccccactcgccttcgttgacaagcgacgcggagagcccatttaaaccagagaactcgctcattccaagaacaaaacccgacacgtcgtttatcctccttccgaaaaacccagaaatggagtcgccggagcagatcttcattctttcggggcagagcaacatggcgggtcggggcggcgtgatccgtgaccacagccacaaccaccaccagcactgggacggcgtcgttccttcggaggctcagcccgacccttcgatcctccgcctcaacgctcacctccactgggaggcggcgcgtgagcctctccacgccgacatcgactccaaggtgtgcggtttgggtccgggaatgtcgttcgccaacgcggtgagggggcgcgtggaggagaagattgggctggtgccgtgcgcggttggtggcacggcgatcaaggagtgggcgcgtggggagcatctgtacgacaacatggtgaagagggcgcgtgagagcgtgaagaacggaggagtgatcaaggggttgctgtggtaccagggggagagcgacacgtcgtctcagcatgatgttgaagcgtaccacgagaacatggttaggctcattgagaatgtgcgccaggaccttgcattgccttcacttccaattatccaggtggctatttgttctggtgatgagaagttcttggagaaaattagggaggttcaattggggatgaaggttgagaatgttgtgtgtgtggatgccaagggattggagctgaaagatgatcatcttcacctgaccactgaggctcaagttcagttgggtcagatgctggctgatgcttacctcaagcattttggatcagctaattcccatcatcctgccctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SASA

Protein Analysis

416

Amino Acids

46.47

Weight (kDa)

5.1

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34215 AT4G34215
fragaria_vesca	FvH4_2g05290 FvH4_2g05290 FvH4_2g33790
malus_domestica	MD15G1076800.v1.1
prunus_persica	Prupe.1G430200_v2.0.a1 Prupe.8G134400_v2.0.a1 Prupe.8G134400_v2.0.a1
pyrus_communis	pycom10g08260 pycom15g07160
rosa_chinensis	RchiOBHm_Chr6g0255411 RchiOBHm_Chr6g0255421
rosa_laevigata	RLG00000010621 RLG00000014839 RLG00000014840
rosa_multiflora	Rmu_sc0002360.1_g000013 Rmu_sc0015750.1_g000001 Rmu_sc0015750.1_g000003
rosa_roxburghii	Rroxscaffold_7G00210000 Rroxscaffold_7G00210010
rosa_rugosa	Rorug05G0558400 Rorug05G0558500 Rorug05G0558600
rosa_samantha	Rh6AG075100 Rh6AG075200 Rh6BG068500 Rh6BG068600 Rh6BG069000 Rh6CG068100 Rh6CG068200 Rh6CG494100 Rh6CG494200 Rh6DG064800 Rh6DG065000
rosa_wichuraiana	Rw6G006630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	909
AccB1I	GGYRCC	2 cut(s)	784, 909
AccII	CGCG	8 cut(s)	123, 413, 679, 749, 762, 794, 826, 865
AclWI	GGATC	5 cut(s)	200, 213, 559, 634, 1228
AcsI	RAATTY	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	3 cut(s)	842, 911, 956
AfiI	CCNNNNNNNGG	4 cut(s)	499, 598, 667, 670
AflIII	ACRYGT	2 cut(s)	465, 927
AgsI	TTSAA	3 cut(s)	57, 950, 1082
AhdI	GACNNNNNGTC	1 cut(s)	931
AjiI	CACGTC	2 cut(s)	468, 930
AjnI	CCWGG	3 cut(s)	912, 993, 1026
AluBI	AGCT	3 cut(s)	143, 1135, 1226
AluI	AGCT	3 cut(s)	143, 1135, 1226
Alw26I	GTCTC	2 cut(s)	61, 939
AlwI	GGATC	5 cut(s)	200, 213, 559, 634, 1228
AlwNI	CAGNNNCTG	1 cut(s)	1192
AoxI	GGCC	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	254
Asp718I	GGTACC	1 cut(s)	909
AspLEI	GCGC	7 cut(s)	123, 679, 762, 794, 826, 865, 993
AspS9I	GGNCC	4 cut(s)	373, 383, 725, 997
AsuC2I	CCSGG	1 cut(s)	729
AsuHPI	GGTGA	5 cut(s)	650, 763, 865, 1058, 1145
AvaII	GGWCC	3 cut(s)	383, 725, 997
BamHI	GGATCC	1 cut(s)	205
BanI	GGYRCC	2 cut(s)	784, 909
BanII	GRGCYC	1 cut(s)	422
BauI	CACGAG	1 cut(s)	959
BbsI	GAAGAC	1 cut(s)	189
BccI	CCATC	1 cut(s)	1242
BceAI	ACGGC	3 cut(s)	619, 772, 822
BciT130I	CCWGG	3 cut(s)	914, 995, 1028
BclI	TGATCA	2 cut(s)	891, 1144
BcnI	CCSGG	1 cut(s)	729
BcoDI	GTCTC	2 cut(s)	61, 939
BglII	AGATCT	1 cut(s)	516
BisI	GCNGC	4 cut(s)	124, 326, 559, 675
BlpI	GCTNAGC	1 cut(s)	624
BlsI	GCNGC	4 cut(s)	125, 327, 560, 676
Bme1390I	CCNGG	4 cut(s)	729, 914, 995, 1028
Bme18I	GGWCC	3 cut(s)	383, 725, 997
BmeRI	GACNNNNNGTC	1 cut(s)	931
BmgBI	CACGTC	2 cut(s)	468, 930
BmgT120I	GGNCC	4 cut(s)	373, 383, 725, 997
BmiI	GGNNCC	5 cut(s)	207, 385, 726, 786, 911
BmrFI	CCNGG	4 cut(s)	729, 914, 995, 1028
BmrI	ACTGGG	2 cut(s)	607, 676
BmsI	GCATC	4 cut(s)	844, 1108, 1179, 1189
BmuI	ACTGGG	2 cut(s)	607, 676
BpiI	GAAGAC	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	624
BpuEI	CTTGAG	2 cut(s)	1155, 1193
BpuMI	CCSGG	1 cut(s)	729
BsaBI	GATNNNNATC	1 cut(s)	1146
BsaHI	GRCGYC	1 cut(s)	606
BsaJI	CCNNGG	3 cut(s)	708, 913, 1122
BsaWI	WCCGGW	1 cut(s)	318
BsaXI	ACNNNNNCTCC	4 cut(s)	689, 719, 824, 854
Bsc4I	CCNNNNNNNGG	4 cut(s)	499, 598, 667, 670
Bse1I	ACTGG	2 cut(s)	602, 671
Bse3DI	GCAATG	1 cut(s)	1004
Bse8I	GATNNNNATC	1 cut(s)	1146
BseBI	CCWGG	3 cut(s)	914, 995, 1028
BseDI	CCNNGG	3 cut(s)	708, 913, 1122
BseGI	GGATG	4 cut(s)	85, 1095, 1123, 1237
BseJI	GATNNNNATC	1 cut(s)	1146
BseLI	CCNNNNNNNGG	4 cut(s)	499, 598, 667, 670
BseMI	GCAATG	1 cut(s)	1004
BseMII	CTCAG	3 cut(s)	638, 950, 1155
BseNI	ACTGG	2 cut(s)	602, 671
BseRI	GAGGAG	4 cut(s)	206, 209, 782, 900
Bsh1236I	CGCG	8 cut(s)	123, 413, 679, 749, 762, 794, 826, 865
BshFI	GGCC	1 cut(s)	374
BshNI	GGYRCC	2 cut(s)	784, 909
BsiSI	CCGG	4 cut(s)	294, 319, 509, 728
BslFI	GGGAC	2 cut(s)	369, 614
BslI	CCNNNNNNNGG	4 cut(s)	499, 598, 667, 670
BsmAI	GTCTC	2 cut(s)	61, 939
BsmBI	CGTCTC	1 cut(s)	939
BsmFI	GGGAC	2 cut(s)	369, 614
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	8 cut(s)	205, 516, 564, 639, 810, 891, 1144, 1220
Bsp1720I	GCTNAGC	1 cut(s)	624
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	3 cut(s)	637, 949, 1156
BspFNI	CGCG	8 cut(s)	123, 413, 679, 749, 762, 794, 826, 865
BspLI	GGNNCC	5 cut(s)	207, 385, 726, 786, 911
BspPI	GGATC	5 cut(s)	200, 213, 559, 634, 1228
BspT107I	GGYRCC	2 cut(s)	784, 909
BsrDI	GCAATG	1 cut(s)	1004
BsrI	ACTGG	2 cut(s)	602, 671
BssECI	CCNNGG	3 cut(s)	708, 913, 1122
BssMI	GATC	8 cut(s)	205, 516, 564, 639, 810, 891, 1144, 1220
BssNI	GRCGYC	1 cut(s)	606
BssSI	CACGAG	1 cut(s)	959
BssT1I	CCWWGG	2 cut(s)	708, 1122
Bst2BI	CACGAG	1 cut(s)	959
Bst2UI	CCWGG	3 cut(s)	914, 995, 1028
Bst6I	CTCTTC	3 cut(s)	43, 183, 851
BstACI	GRCGYC	1 cut(s)	606
BstC8I	GCNNGC	2 cut(s)	108, 1194
BstDEI	CTNAG	4 cut(s)	139, 624, 936, 1164
BstF5I	GGATG	4 cut(s)	85, 1095, 1123, 1237
BstFNI	CGCG	8 cut(s)	123, 413, 679, 749, 762, 794, 826, 865
BstHHI	GCGC	7 cut(s)	123, 679, 762, 794, 826, 865, 993
BstKTI	GATC	8 cut(s)	208, 519, 567, 642, 813, 894, 1147, 1223
BstMAI	GTCTC	2 cut(s)	61, 939
BstMBI	GATC	8 cut(s)	205, 516, 564, 639, 810, 891, 1144, 1220
BstMWI	GCNNNNNNNGC	1 cut(s)	832
BstNI	CCWGG	3 cut(s)	914, 995, 1028
BstSCI	CCNGG	4 cut(s)	727, 912, 993, 1026
BstUI	CGCG	8 cut(s)	123, 413, 679, 749, 762, 794, 826, 865
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	205, 516
BstXI	CCANNNNNNTGG	1 cut(s)	1129
BstYI	RGATCY	2 cut(s)	205, 516
BsuRI	GGCC	1 cut(s)	374
BtrI	CACGTC	2 cut(s)	468, 930
BtsCI	GGATG	4 cut(s)	85, 1095, 1123, 1237
BtsIMutI	CAGTG	3 cut(s)	595, 664, 1161
Cac8I	GCNNGC	2 cut(s)	108, 1194
CaiI	CAGNNNCTG	1 cut(s)	1192
CfoI	GCGC	7 cut(s)	123, 679, 762, 794, 826, 865, 993
Cfr13I	GGNCC	4 cut(s)	373, 383, 725, 997
CseI	GACGC	3 cut(s)	339, 419, 595
Csp6I	GTAC	3 cut(s)	841, 910, 955
CviAII	CATG	4 cut(s)	544, 850, 941, 967
CviQI	GTAC	3 cut(s)	841, 910, 955
DdeI	CTNAG	4 cut(s)	139, 624, 936, 1164
DpnI	GATC	8 cut(s)	207, 518, 566, 641, 812, 893, 1146, 1222
DpnII	GATC	8 cut(s)	205, 516, 564, 639, 810, 891, 1144, 1220
DraI	TTTAAA	1 cut(s)	427
DriI	GACNNNNNGTC	1 cut(s)	931
Eam1104I	CTCTTC	3 cut(s)	43, 183, 851
Eam1105I	GACNNNNNGTC	1 cut(s)	931
EarI	CTCTTC	3 cut(s)	43, 183, 851
EciI	GGCGGA	1 cut(s)	635
Eco130I	CCWWGG	2 cut(s)	708, 1122
Eco24I	GRGCYC	1 cut(s)	422
Eco47I	GGWCC	3 cut(s)	383, 725, 997
EcoO109I	RGGNCCY	1 cut(s)	997
EcoRII	CCWGG	3 cut(s)	912, 993, 1026
EcoT14I	CCWWGG	2 cut(s)	708, 1122
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	2 cut(s)	708, 1122
Esp3I	CGTCTC	1 cut(s)	939
FaeI	CATG	4 cut(s)	547, 853, 944, 970
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FaqI	GGGAC	2 cut(s)	369, 614
FatI	CATG	4 cut(s)	543, 849, 940, 966
FauI	CCCGC	2 cut(s)	99, 541
FbaI	TGATCA	2 cut(s)	891, 1144
Fnu4HI	GCNGC	4 cut(s)	124, 326, 559, 675
FokI	GGATG	4 cut(s)	92, 1102, 1130, 1224
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	4 cut(s)	124, 326, 559, 675
GlaI	GCGC	7 cut(s)	122, 678, 761, 793, 825, 864, 992
GluI	GCNGC	4 cut(s)	124, 326, 559, 675
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	4 cut(s)	294, 319, 509, 728
HgaI	GACGC	3 cut(s)	339, 419, 595
HhaI	GCGC	7 cut(s)	123, 679, 762, 794, 826, 865, 993
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	4 cut(s)	547, 853, 944, 970
Hin6I	GCGC	7 cut(s)	121, 677, 760, 792, 824, 863, 991
HinP1I	GCGC	7 cut(s)	121, 677, 760, 792, 824, 863, 991
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	5 cut(s)	133, 233, 239, 503, 704
HpaII	CCGG	4 cut(s)	294, 319, 509, 728
HphI	GGTGA	5 cut(s)	650, 763, 865, 1058, 1145
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	8 cut(s)	10, 232, 238, 247, 366, 486, 619, 1188
Hpy188III	TCNNGA	2 cut(s)	77, 152
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	6 cut(s)	405, 491, 624, 645, 1020, 1087
HpyCH4IV	ACGT	3 cut(s)	360, 467, 929
HpyCH4V	TGCA	2 cut(s)	270, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	832
HpyF3I	CTNAG	4 cut(s)	139, 624, 936, 1164
HpySE526I	ACGT	3 cut(s)	360, 467, 929
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	4 cut(s)	547, 853, 944, 970
HspAI	GCGC	7 cut(s)	121, 677, 760, 792, 824, 863, 991
KpnI	GGTACC	1 cut(s)	913
Ksp22I	TGATCA	2 cut(s)	891, 1144
Kzo9I	GATC	8 cut(s)	205, 516, 564, 639, 810, 891, 1144, 1220
LmnI	GCTCC	3 cut(s)	511, 832, 1132
LweI	GCATC	4 cut(s)	844, 1108, 1179, 1189
MaeII	ACGT	3 cut(s)	360, 467, 929
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	8 cut(s)	207, 518, 566, 641, 812, 893, 1146, 1222
MboI	GATC	8 cut(s)	205, 516, 564, 639, 810, 891, 1144, 1220
MfeI	CAATTG	1 cut(s)	1082
MflI	RGATCY	2 cut(s)	205, 516
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	5 cut(s)	254, 1020, 1068, 1082, 1228
MlyI	GAGTC	3 cut(s)	127, 512, 698
MseI	TTAA	2 cut(s)	116, 426
MspI	CCGG	4 cut(s)	294, 319, 509, 728
MspR9I	CCNGG	4 cut(s)	729, 914, 995, 1028
MunI	CAATTG	1 cut(s)	1082
Mva1269I	GAATGC	1 cut(s)	94
MvaI	CCWGG	3 cut(s)	914, 995, 1028
MvnI	CGCG	8 cut(s)	123, 413, 679, 749, 762, 794, 826, 865
MwoI	GCNNNNNNNGC	1 cut(s)	832
NciI	CCSGG	1 cut(s)	729
NdeII	GATC	8 cut(s)	205, 516, 564, 639, 810, 891, 1144, 1220
NlaIII	CATG	4 cut(s)	547, 853, 944, 970
NlaIV	GGNNCC	5 cut(s)	207, 385, 726, 786, 911
NmuCI	GTSAC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	6 cut(s)	49, 159, 165, 168, 177, 699
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	233, 239
PflFI	GACNNNGTC	2 cut(s)	72, 605
PfoI	TCCNGGA	1 cut(s)	727
PkrI	GCNGC	4 cut(s)	125, 327, 560, 676
PleI	GAGTC	3 cut(s)	127, 511, 698
PpsI	GAGTC	3 cut(s)	127, 511, 698
PpuMI	RGGWCCY	1 cut(s)	997
Psp5II	RGGWCCY	1 cut(s)	997
Psp6I	CCWGG	3 cut(s)	912, 993, 1026
PspGI	CCWGG	3 cut(s)	912, 993, 1026
PspN4I	GGNNCC	5 cut(s)	207, 385, 726, 786, 911
PspPI	GGNCC	4 cut(s)	373, 383, 725, 997
PspPPI	RGGWCCY	1 cut(s)	997
PstNI	CAGNNNCTG	1 cut(s)	1192
PsuI	RGATCY	2 cut(s)	205, 516
PsyI	GACNNNGTC	2 cut(s)	72, 605
RsaI	GTAC	3 cut(s)	842, 911, 956
RsaNI	GTAC	3 cut(s)	841, 910, 955
SaqAI	TTAA	2 cut(s)	116, 426
SatI	GCNGC	4 cut(s)	124, 326, 559, 675
Sau3AI	GATC	8 cut(s)	205, 516, 564, 639, 810, 891, 1144, 1220
Sau96I	GGNCC	4 cut(s)	373, 383, 725, 997
SchI	GAGTC	3 cut(s)	127, 512, 698
ScrFI	CCNGG	4 cut(s)	729, 914, 995, 1028
SduI	GDGCHC	1 cut(s)	422
SfaNI	GCATC	4 cut(s)	844, 1108, 1179, 1189
SinI	GGWCC	3 cut(s)	383, 725, 997
SmlI	CTYRAG	2 cut(s)	1170, 1208
SmoI	CTYRAG	2 cut(s)	1170, 1208
Sse9I	AATT	5 cut(s)	254, 1020, 1068, 1082, 1228
StyD4I	CCNGG	4 cut(s)	727, 912, 993, 1026
StyI	CCWWGG	2 cut(s)	708, 1122
TaiI	ACGT	3 cut(s)	363, 470, 932
TaqI	TCGA	5 cut(s)	15, 153, 343, 638, 702
TasI	AATT	5 cut(s)	254, 1020, 1068, 1082, 1228
TauI	GCSGC	4 cut(s)	126, 328, 561, 677
TfiI	GAWTC	2 cut(s)	233, 239
Tru1I	TTAA	2 cut(s)	116, 426
Tru9I	TTAA	2 cut(s)	116, 426
TscAI	CASTG	3 cut(s)	602, 671, 1168
TseFI	GTSAC	1 cut(s)	569
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	6 cut(s)	17, 101, 267, 277, 511, 1106
TspGWI	ACGGA	2 cut(s)	557, 897
TspRI	CASTG	3 cut(s)	602, 671, 1168
Tth111I	GACNNNGTC	2 cut(s)	72, 605
VpaK11BI	GGWCC	3 cut(s)	383, 725, 997
XapI	RAATTY	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.