Rh6BG068500

Carbohydrate esterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003321
Physical Location & Seq
Forward (+)
10530486 .. 10532668
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG068500.1

Sequence Viewer

Length: 1173 bp
ATGAACTCCGAACTCGACCCAACTCGTAATCCATTCTCTTCTCGTTTTCCTCGTTCAAGGCTTATGCGACTTTGTCTGGATGATATGAATGCCTCTGCTCAAAGGCGGGCTCTGTTAATGCGTGGCATGTTTACTCTCTTAGCTCAATATCTCGACGACGACGACGACGAAGACGAAGACGAAGAGGAGGAGGAGGACGAGGATCCCCAAGAACAGGCCGGAGAACAAGACCCACTCGCTAACCGGAAGCGGCGACGCTCAACTACTCGAAACCCAAACGACGACGTTCCGCGCAAGGCCCACGCTGGTCCCCACTCGCCTTCGTTGACAAGCGACGCGGAGAGCCCATTTAAACCAGAGAACTCGCTCATTCCAAGAACAAAACCCGACACGTCGTTTATCCTCCTTCCGAAAAACCCGGAAATGGAGTCGCCGGAGCAGATCTTCATTCTTTCGGGGCAGAGCAACATGGCGGGTCGGGGCGGCGTGATCCGTGACCACAACCACCACCAGCACTGGGACGGCGTCGTTCCTTCGGAGGCTCAGCCCGACCCTTCGATCCTCCGCCTCAACGCTCACCTCCACTGGGAGGCGGCGCGTGAGCCTCTCCACGCCGACATCGACACCAAGAAGGTGTGCGGTTTGGGTCCGGGAATGTCGTTCGCCAACGCGGTGAGGGGGCGCGTGGAGGGGAAGATTGGGCTGGTGCCGTGCGCGGTTGGCGGCACGGCGATCAAGGAGTGGGCGCGTGGGGAGCATCTGTACGAGAACATGGTGAAGAGGGCGCGTGAGAGCGTGAAGAACGGAGGAGTGATCAAGGGGTTGCTGTGGTACCAGGGGGAGAGCGACACGTCGTCTCAGCATGATGTTGAAGCGTACCACGAGAACATGGTTAGGCTCATTGAGAATGTGCGCCAGGACCTTGCTTTGCCTTCACTTCCAATTATCCAGGTGGCTATTTGTTCTGGTGATGAGAAGTTCTTGGAGAAAATTAGGGAGGTTCAATTGGGGATGAAGGTTGAGAATGTTGTGTGTGTGGATGCCAAGGGATTGGAGCTGAAAGATGATCATCTTCACCTGACCACTGAGGCTCAAGTTCAGTTGGGTCAGATGCTGGCTGATGCTTACCTCAAGCATTTTGGATCAGCTAATTCCCATCATCCTGCCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SASA

Protein Analysis

390

Amino Acids

43.62

Weight (kDa)

5.35

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SASA PF03629 146 - 378 2.4e-96 Carbohydrate esterase, sialic acid-specific acetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 831
AccB1I GGYRCC 2 cut(s) 706, 831
AccII CGCG 8 cut(s) 292, 338, 598, 671, 684, 716, 748, 787
AclWI GGATC 5 cut(s) 197, 210, 484, 553, 1150
AcyI GRCGYC 1 cut(s) 525
AfaI GTAC 3 cut(s) 764, 833, 878
AfiI CCNNNNNNNGG 5 cut(s) 214, 424, 517, 586, 589
AflIII ACRYGT 2 cut(s) 390, 849
AgsI TTSAA 3 cut(s) 57, 872, 1004
AhdI GACNNNNNGTC 1 cut(s) 853
AjiI CACGTC 2 cut(s) 393, 852
AjnI CCWGG 3 cut(s) 834, 915, 948
AluBI AGCT 3 cut(s) 143, 1057, 1148
AluI AGCT 3 cut(s) 143, 1057, 1148
Alw26I GTCTC 1 cut(s) 861
AlwI GGATC 5 cut(s) 197, 210, 484, 553, 1150
AlwNI CAGNNNCTG 1 cut(s) 1114
AoxI GGCC 2 cut(s) 216, 297
Asp718I GGTACC 1 cut(s) 831
AspLEI GCGC 7 cut(s) 294, 598, 684, 716, 748, 787, 915
AspS9I GGNCC 4 cut(s) 298, 308, 647, 919
AsuC2I CCSGG 2 cut(s) 419, 651
AsuHPI GGTGA 5 cut(s) 569, 685, 787, 980, 1067
AvaII GGWCC 3 cut(s) 308, 647, 919
BamHI GGATCC 1 cut(s) 202
BanI GGYRCC 2 cut(s) 706, 831
BanII GRGCYC 2 cut(s) 112, 347
BauI CACGAG 1 cut(s) 881
BbsI GAAGAC 2 cut(s) 177, 183
BccI CCATC 1 cut(s) 1164
BceAI ACGGC 3 cut(s) 538, 694, 744
BciT130I CCWGG 3 cut(s) 836, 917, 950
BclI TGATCA 2 cut(s) 813, 1066
BcnI CCSGG 2 cut(s) 419, 651
BcoDI GTCTC 1 cut(s) 861
BglII AGATCT 1 cut(s) 441
BisI GCNGC 4 cut(s) 251, 484, 594, 724
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 4 cut(s) 252, 485, 595, 725
Bme1390I CCNGG 5 cut(s) 419, 651, 836, 917, 950
Bme18I GGWCC 3 cut(s) 308, 647, 919
BmeRI GACNNNNNGTC 1 cut(s) 853
BmgBI CACGTC 2 cut(s) 393, 852
BmgT120I GGNCC 4 cut(s) 298, 308, 647, 919
BmiI GGNNCC 5 cut(s) 204, 310, 648, 708, 833
BmrFI CCNGG 5 cut(s) 419, 651, 836, 917, 950
BmrI ACTGGG 2 cut(s) 526, 595
BmsI GCATC 4 cut(s) 766, 1030, 1101, 1111
BmuI ACTGGG 2 cut(s) 526, 595
BpiI GAAGAC 2 cut(s) 177, 183
Bpu1102I GCTNAGC 1 cut(s) 543
BpuEI CTTGAG 2 cut(s) 1077, 1115
BpuMI CCSGG 2 cut(s) 419, 651
BsaBI GATNNNNATC 1 cut(s) 1068
BsaHI GRCGYC 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 835, 1044
BsaWI WCCGGW 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 5 cut(s) 214, 424, 517, 586, 589
Bse1I ACTGG 2 cut(s) 521, 590
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 3 cut(s) 836, 917, 950
BseDI CCNNGG 2 cut(s) 835, 1044
BseGI GGATG 4 cut(s) 85, 1017, 1045, 1159
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 5 cut(s) 214, 424, 517, 586, 589
BseMII CTCAG 3 cut(s) 557, 872, 1077
BseNI ACTGG 2 cut(s) 521, 590
BseRI GAGGAG 4 cut(s) 200, 203, 206, 822
Bsh1236I CGCG 8 cut(s) 292, 338, 598, 671, 684, 716, 748, 787
BshFI GGCC 2 cut(s) 218, 299
BshNI GGYRCC 2 cut(s) 706, 831
BsiSI CCGG 5 cut(s) 219, 244, 419, 434, 650
BslFI GGGAC 2 cut(s) 294, 533
BslI CCNNNNNNNGG 5 cut(s) 214, 424, 517, 586, 589
BsmAI GTCTC 1 cut(s) 861
BsmBI CGTCTC 1 cut(s) 861
BsmFI GGGAC 2 cut(s) 294, 533
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 2 cut(s) 218, 299
Bsp1286I GDGCHC 2 cut(s) 112, 347
Bsp143I GATC 8 cut(s) 202, 441, 489, 558, 732, 813, 1066, 1142
Bsp1720I GCTNAGC 1 cut(s) 543
BspANI GGCC 2 cut(s) 218, 299
BspCNI CTCAG 3 cut(s) 556, 871, 1078
BspFNI CGCG 8 cut(s) 292, 338, 598, 671, 684, 716, 748, 787
BspLI GGNNCC 5 cut(s) 204, 310, 648, 708, 833
BspPI GGATC 5 cut(s) 197, 210, 484, 553, 1150
BspT107I GGYRCC 2 cut(s) 706, 831
BsrI ACTGG 2 cut(s) 521, 590
BssECI CCNNGG 2 cut(s) 835, 1044
BssMI GATC 8 cut(s) 202, 441, 489, 558, 732, 813, 1066, 1142
BssNI GRCGYC 1 cut(s) 525
BssSI CACGAG 1 cut(s) 881
BssT1I CCWWGG 1 cut(s) 1044
Bst2BI CACGAG 1 cut(s) 881
Bst2UI CCWGG 3 cut(s) 836, 917, 950
Bst6I CTCTTC 3 cut(s) 43, 177, 773
BstACI GRCGYC 1 cut(s) 525
BstC8I GCNNGC 2 cut(s) 108, 1116
BstDEI CTNAG 4 cut(s) 139, 543, 858, 1086
BstF5I GGATG 4 cut(s) 85, 1017, 1045, 1159
BstFNI CGCG 8 cut(s) 292, 338, 598, 671, 684, 716, 748, 787
BstHHI GCGC 7 cut(s) 294, 598, 684, 716, 748, 787, 915
BstKTI GATC 8 cut(s) 205, 444, 492, 561, 735, 816, 1069, 1145
BstMAI GTCTC 1 cut(s) 861
BstMBI GATC 8 cut(s) 202, 441, 489, 558, 732, 813, 1066, 1142
BstMWI GCNNNNNNNGC 2 cut(s) 720, 754
BstNI CCWGG 3 cut(s) 836, 917, 950
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 5 cut(s) 417, 649, 834, 915, 948
BstUI CGCG 8 cut(s) 292, 338, 598, 671, 684, 716, 748, 787
BstV2I GAAGAC 2 cut(s) 177, 183
BstX2I RGATCY 2 cut(s) 202, 441
BstXI CCANNNNNNTGG 1 cut(s) 1051
BstYI RGATCY 2 cut(s) 202, 441
BsuRI GGCC 2 cut(s) 218, 299
BtrI CACGTC 2 cut(s) 393, 852
BtsCI GGATG 4 cut(s) 85, 1017, 1045, 1159
BtsIMutI CAGTG 3 cut(s) 514, 583, 1083
Cac8I GCNNGC 2 cut(s) 108, 1116
CaiI CAGNNNCTG 1 cut(s) 1114
CfoI GCGC 7 cut(s) 294, 598, 684, 716, 748, 787, 915
Cfr13I GGNCC 4 cut(s) 298, 308, 647, 919
CseI GACGC 3 cut(s) 264, 344, 514
Csp6I GTAC 3 cut(s) 763, 832, 877
CviAII CATG 5 cut(s) 127, 469, 772, 863, 889
CviQI GTAC 3 cut(s) 763, 832, 877
DdeI CTNAG 4 cut(s) 139, 543, 858, 1086
DpnI GATC 8 cut(s) 204, 443, 491, 560, 734, 815, 1068, 1144
DpnII GATC 8 cut(s) 202, 441, 489, 558, 732, 813, 1066, 1142
DraI TTTAAA 1 cut(s) 352
DriI GACNNNNNGTC 1 cut(s) 853
Eam1104I CTCTTC 3 cut(s) 43, 177, 773
Eam1105I GACNNNNNGTC 1 cut(s) 853
EarI CTCTTC 3 cut(s) 43, 177, 773
EciI GGCGGA 1 cut(s) 554
Eco130I CCWWGG 1 cut(s) 1044
Eco24I GRGCYC 2 cut(s) 112, 347
Eco47I GGWCC 3 cut(s) 308, 647, 919
EcoO109I RGGNCCY 1 cut(s) 919
EcoRII CCWGG 3 cut(s) 834, 915, 948
EcoT14I CCWWGG 1 cut(s) 1044
EcoT38I GRGCYC 2 cut(s) 112, 347
ErhI CCWWGG 1 cut(s) 1044
Esp3I CGTCTC 1 cut(s) 861
FaeI CATG 5 cut(s) 130, 472, 775, 866, 892
FaiI YATR 7 cut(s) 65, 86, 128, 470, 773, 864, 890
FaqI GGGAC 2 cut(s) 294, 533
FatI CATG 5 cut(s) 126, 468, 771, 862, 888
FauI CCCGC 2 cut(s) 99, 466
FbaI TGATCA 2 cut(s) 813, 1066
Fnu4HI GCNGC 4 cut(s) 251, 484, 594, 724
FokI GGATG 4 cut(s) 92, 1024, 1052, 1146
FriOI GRGCYC 2 cut(s) 112, 347
Fsp4HI GCNGC 4 cut(s) 251, 484, 594, 724
GlaI GCGC 7 cut(s) 293, 597, 683, 715, 747, 786, 914
GluI GCNGC 4 cut(s) 251, 484, 594, 724
HaeIII GGCC 2 cut(s) 218, 299
HapII CCGG 5 cut(s) 219, 244, 419, 434, 650
HgaI GACGC 3 cut(s) 264, 344, 514
HhaI GCGC 7 cut(s) 294, 598, 684, 716, 748, 787, 915
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 5 cut(s) 130, 472, 775, 866, 892
Hin6I GCGC 7 cut(s) 292, 596, 682, 714, 746, 785, 913
HinP1I GCGC 7 cut(s) 292, 596, 682, 714, 746, 785, 913
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HinfI GANTC 1 cut(s) 428
HpaII CCGG 5 cut(s) 219, 244, 419, 434, 650
HphI GGTGA 5 cut(s) 569, 685, 787, 980, 1067
Hpy166II GTNNAC 2 cut(s) 132, 327
Hpy188I TCNGA 4 cut(s) 10, 411, 538, 1110
Hpy188III TCNNGA 2 cut(s) 77, 152
Hpy8I GTNNAC 2 cut(s) 132, 327
HpyAV CCTTC 7 cut(s) 330, 416, 543, 564, 625, 942, 1009
HpyCH4IV ACGT 3 cut(s) 285, 392, 851
HpyF10VI GCNNNNNNNGC 2 cut(s) 720, 754
HpyF3I CTNAG 4 cut(s) 139, 543, 858, 1086
HpySE526I ACGT 3 cut(s) 285, 392, 851
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 5 cut(s) 130, 472, 775, 866, 892
HspAI GCGC 7 cut(s) 292, 596, 682, 714, 746, 785, 913
KpnI GGTACC 1 cut(s) 835
Ksp22I TGATCA 2 cut(s) 813, 1066
Kzo9I GATC 8 cut(s) 202, 441, 489, 558, 732, 813, 1066, 1142
LmnI GCTCC 3 cut(s) 436, 754, 1054
LweI GCATC 4 cut(s) 766, 1030, 1101, 1111
MaeII ACGT 3 cut(s) 285, 392, 851
MaeIII GTNAC 1 cut(s) 494
MalI GATC 8 cut(s) 204, 443, 491, 560, 734, 815, 1068, 1144
MboI GATC 8 cut(s) 202, 441, 489, 558, 732, 813, 1066, 1142
MboII GAAGA 9 cut(s) 30, 182, 188, 194, 436, 706, 790, 811, 1064
MfeI CAATTG 1 cut(s) 1004
MflI RGATCY 2 cut(s) 202, 441
MhlI GDGCHC 2 cut(s) 112, 347
MluCI AATT 4 cut(s) 942, 990, 1004, 1150
MlyI GAGTC 1 cut(s) 437
MseI TTAA 2 cut(s) 116, 351
MspI CCGG 5 cut(s) 219, 244, 419, 434, 650
MspR9I CCNGG 5 cut(s) 419, 651, 836, 917, 950
MunI CAATTG 1 cut(s) 1004
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 3 cut(s) 836, 917, 950
MvnI CGCG 8 cut(s) 292, 338, 598, 671, 684, 716, 748, 787
MwoI GCNNNNNNNGC 2 cut(s) 720, 754
NciI CCSGG 2 cut(s) 419, 651
NdeII GATC 8 cut(s) 202, 441, 489, 558, 732, 813, 1066, 1142
NlaIII CATG 5 cut(s) 130, 472, 775, 866, 892
NlaIV GGNNCC 5 cut(s) 204, 310, 648, 708, 833
NmuCI GTSAC 1 cut(s) 494
NspI RCATGY 1 cut(s) 130
PcsI WCGNNNNNNNCGW 6 cut(s) 49, 159, 162, 165, 171, 618
PctI GAATGC 1 cut(s) 94
PflFI GACNNNGTC 2 cut(s) 72, 524
PfoI TCCNGGA 1 cut(s) 649
PkrI GCNGC 4 cut(s) 252, 485, 595, 725
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PpuMI RGGWCCY 1 cut(s) 919
Psp5II RGGWCCY 1 cut(s) 919
Psp6I CCWGG 3 cut(s) 834, 915, 948
PspGI CCWGG 3 cut(s) 834, 915, 948
PspN4I GGNNCC 5 cut(s) 204, 310, 648, 708, 833
PspPI GGNCC 4 cut(s) 298, 308, 647, 919
PspPPI RGGWCCY 1 cut(s) 919
PstNI CAGNNNCTG 1 cut(s) 1114
PsuI RGATCY 2 cut(s) 202, 441
PsyI GACNNNGTC 2 cut(s) 72, 524
RsaI GTAC 3 cut(s) 764, 833, 878
RsaNI GTAC 3 cut(s) 763, 832, 877
SaqAI TTAA 2 cut(s) 116, 351
SatI GCNGC 4 cut(s) 251, 484, 594, 724
Sau3AI GATC 8 cut(s) 202, 441, 489, 558, 732, 813, 1066, 1142
Sau96I GGNCC 4 cut(s) 298, 308, 647, 919
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 5 cut(s) 419, 651, 836, 917, 950
SduI GDGCHC 2 cut(s) 112, 347
SfaNI GCATC 4 cut(s) 766, 1030, 1101, 1111
SinI GGWCC 3 cut(s) 308, 647, 919
SmlI CTYRAG 2 cut(s) 1092, 1130
SmoI CTYRAG 2 cut(s) 1092, 1130
Sse9I AATT 4 cut(s) 942, 990, 1004, 1150
StyD4I CCNGG 5 cut(s) 417, 649, 834, 915, 948
StyI CCWWGG 1 cut(s) 1044
TaiI ACGT 3 cut(s) 288, 395, 854
TaqI TCGA 5 cut(s) 15, 153, 268, 557, 621
TasI AATT 4 cut(s) 942, 990, 1004, 1150
TauI GCSGC 4 cut(s) 253, 486, 596, 726
Tru1I TTAA 2 cut(s) 116, 351
Tru9I TTAA 2 cut(s) 116, 351
TscAI CASTG 3 cut(s) 521, 590, 1090
TseFI GTSAC 1 cut(s) 494
Tsp45I GTSAC 1 cut(s) 494
TspDTI ATGAA 4 cut(s) 17, 101, 436, 1028
TspGWI ACGGA 2 cut(s) 482, 819
TspRI CASTG 3 cut(s) 521, 590, 1090
Tth111I GACNNNGTC 2 cut(s) 72, 524
VpaK11BI GGWCC 3 cut(s) 308, 647, 919
XceI RCATGY 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.