Rh6AG075200

Carbohydrate esterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003321
Physical Location & Seq
Reverse (-)
10613535 .. 10615178
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG075200.1

Sequence Viewer

Length: 1119 bp
ATGCGACTTTGTCTGGATGATATGAATGCCTCTGCTCAAAGGCGGGCTCTGTTAATGCGCGGCATGTTTACTCTCTTAGCTCACTATCTCGACAACGACGACGAAGATGACGAAGACGAAGATGAAGAGGAGGAGGACGAGGATCCCCAAGAACAAGCCGGAGAACAAGACCCACTCGCTAACCGGAAGCGGCGACGCTCAACTACTCGAAAGCCAAACGACGACGTTCCGCGCAAGGCCCACGCTGGTCCCCACTCGCCTTCGTTGACAAGCGACGCGGAGAGCCCATTTAAACCAGAGAACTCGCTCATTCCAAGAACAAAACCTGACACGTCGTTTATCCTCCTTCCGAAAAACCCGGAAATGGAGCCGCCGGAGCAGATCTTCATTCTTTCGGGGCAGAGCAACATGGCGGGTCGGGGCGGCGTGATCCGTGACCACAGCCACAACCACCACCAGCACTGGGACGGCGTCGTTCCTTCGGAGGCTCAGCCCGACCCTTCGATCCTCCGCCTCAACGCTCACCTCCACTGGGAGGCGGCGCGTGAGCCTCTCCACGCCGACTTCGACTCCAAGAAGGTGTGCGGTTTGGGTCCGGGAATGTCGTTCGCCAACGCGGTGAGGGGGCGCGTGGAGGGGAAGATTGGGCTGGTGCCGTGCGCGGTTGGTGGCACGGCGATCAAGGAGTGGGCGCGTGGGGAGCATCTGTACGAGAACATGGTGAAGAGGGCGCGTGAGAGCGTGAAGAACGGAGGAGTGATCAAGGGGTTGCTGTGGTACCAGGGGGAGAGCGACACGTCGTCTCAGCATGATGTTGAAGCGTACCACGAGAACATGGTTAGGCTCATTGAGAATGTGCGCCAGGACCATGCTTTGCCTTCACTTCCAATTATCCAGGTGGCTATTTGTTCTGGTGATGAGAAGTTCTTGGAGAAAATTAGGGAGGTTCAATTGGGGATGAAGGTTGAGAATGTTGTGTGTGTGGATGCCAAGGGATTGGAGCTGAAAGATGATCATCTTCACCTGACCACTGAGGCTCAAGTTCAGTTGGGTCAGATGCTGGCTGATGCTTACCTCAAGCATTTTGGATCAGCTAATTCCCATCATCCTGCCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SASA

Protein Analysis

372

Amino Acids

41.55

Weight (kDa)

5.42

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SASA PF03629 126 - 360 1.3e-94 Carbohydrate esterase, sialic acid-specific acetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 777
AccB1I GGYRCC 2 cut(s) 652, 777
AccII CGCG 9 cut(s) 60, 232, 278, 544, 617, 630, 662, 694, 733
AclWI GGATC 5 cut(s) 137, 150, 424, 499, 1096
AcyI GRCGYC 1 cut(s) 471
AfaI GTAC 3 cut(s) 710, 779, 824
AfiI CCNNNNNNNGG 4 cut(s) 364, 463, 532, 535
AflIII ACRYGT 2 cut(s) 330, 795
AgsI TTSAA 2 cut(s) 818, 950
AhdI GACNNNNNGTC 1 cut(s) 799
AjiI CACGTC 2 cut(s) 333, 798
AjnI CCWGG 3 cut(s) 780, 861, 894
AluBI AGCT 3 cut(s) 80, 1003, 1094
AluI AGCT 3 cut(s) 80, 1003, 1094
Alw26I GTCTC 1 cut(s) 807
AlwI GGATC 5 cut(s) 137, 150, 424, 499, 1096
AlwNI CAGNNNCTG 1 cut(s) 1060
AoxI GGCC 1 cut(s) 237
Asp718I GGTACC 1 cut(s) 777
AspLEI GCGC 8 cut(s) 60, 234, 544, 630, 662, 694, 733, 861
AspS9I GGNCC 4 cut(s) 238, 248, 593, 865
AsuC2I CCSGG 2 cut(s) 359, 597
AsuHPI GGTGA 5 cut(s) 515, 631, 733, 926, 1013
AvaII GGWCC 3 cut(s) 248, 593, 865
BamHI GGATCC 1 cut(s) 142
BanI GGYRCC 2 cut(s) 652, 777
BanII GRGCYC 2 cut(s) 49, 287
BauI CACGAG 1 cut(s) 827
BbsI GAAGAC 1 cut(s) 120
BccI CCATC 1 cut(s) 1110
BceAI ACGGC 3 cut(s) 484, 640, 690
BciT130I CCWGG 3 cut(s) 782, 863, 896
BclI TGATCA 2 cut(s) 759, 1012
BcnI CCSGG 2 cut(s) 359, 597
BcoDI GTCTC 1 cut(s) 807
BglII AGATCT 1 cut(s) 381
BisI GCNGC 5 cut(s) 61, 191, 371, 424, 540
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 5 cut(s) 62, 192, 372, 425, 541
Bme1390I CCNGG 5 cut(s) 359, 597, 782, 863, 896
Bme18I GGWCC 3 cut(s) 248, 593, 865
BmeRI GACNNNNNGTC 1 cut(s) 799
BmgBI CACGTC 2 cut(s) 333, 798
BmgT120I GGNCC 4 cut(s) 238, 248, 593, 865
BmiI GGNNCC 6 cut(s) 144, 250, 369, 594, 654, 779
BmrFI CCNGG 5 cut(s) 359, 597, 782, 863, 896
BmrI ACTGGG 2 cut(s) 472, 541
BmsI GCATC 4 cut(s) 712, 976, 1047, 1057
BmuI ACTGGG 2 cut(s) 472, 541
BpiI GAAGAC 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 489
BpuEI CTTGAG 2 cut(s) 1023, 1061
BpuMI CCSGG 2 cut(s) 359, 597
BsaBI GATNNNNATC 1 cut(s) 1014
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 781, 990
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 4 cut(s) 554, 584, 692, 722
Bsc4I CCNNNNNNNGG 4 cut(s) 364, 463, 532, 535
Bse1I ACTGG 2 cut(s) 467, 536
Bse8I GATNNNNATC 1 cut(s) 1014
BseBI CCWGG 3 cut(s) 782, 863, 896
BseDI CCNNGG 2 cut(s) 781, 990
BseGI GGATG 4 cut(s) 22, 963, 991, 1105
BseJI GATNNNNATC 1 cut(s) 1014
BseLI CCNNNNNNNGG 4 cut(s) 364, 463, 532, 535
BseMII CTCAG 3 cut(s) 503, 818, 1023
BseNI ACTGG 2 cut(s) 467, 536
BseRI GAGGAG 3 cut(s) 143, 146, 768
Bsh1236I CGCG 9 cut(s) 60, 232, 278, 544, 617, 630, 662, 694, 733
BshFI GGCC 1 cut(s) 239
BshNI GGYRCC 2 cut(s) 652, 777
BsiSI CCGG 5 cut(s) 159, 184, 359, 374, 596
BslFI GGGAC 2 cut(s) 234, 479
BslI CCNNNNNNNGG 4 cut(s) 364, 463, 532, 535
BsmAI GTCTC 1 cut(s) 807
BsmBI CGTCTC 1 cut(s) 807
BsmFI GGGAC 2 cut(s) 234, 479
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 49, 287
Bsp143I GATC 8 cut(s) 142, 381, 429, 504, 678, 759, 1012, 1088
Bsp1720I GCTNAGC 1 cut(s) 489
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 3 cut(s) 502, 817, 1024
BspFNI CGCG 9 cut(s) 60, 232, 278, 544, 617, 630, 662, 694, 733
BspLI GGNNCC 6 cut(s) 144, 250, 369, 594, 654, 779
BspPI GGATC 5 cut(s) 137, 150, 424, 499, 1096
BspT107I GGYRCC 2 cut(s) 652, 777
BsrI ACTGG 2 cut(s) 467, 536
BssECI CCNNGG 2 cut(s) 781, 990
BssMI GATC 8 cut(s) 142, 381, 429, 504, 678, 759, 1012, 1088
BssNI GRCGYC 1 cut(s) 471
BssSI CACGAG 1 cut(s) 827
BssT1I CCWWGG 1 cut(s) 990
Bst2BI CACGAG 1 cut(s) 827
Bst2UI CCWGG 3 cut(s) 782, 863, 896
Bst6I CTCTTC 2 cut(s) 120, 719
BstACI GRCGYC 1 cut(s) 471
BstC8I GCNNGC 2 cut(s) 45, 1062
BstDEI CTNAG 4 cut(s) 76, 489, 804, 1032
BstF5I GGATG 4 cut(s) 22, 963, 991, 1105
BstFNI CGCG 9 cut(s) 60, 232, 278, 544, 617, 630, 662, 694, 733
BstHHI GCGC 8 cut(s) 60, 234, 544, 630, 662, 694, 733, 861
BstKTI GATC 8 cut(s) 145, 384, 432, 507, 681, 762, 1015, 1091
BstMAI GTCTC 1 cut(s) 807
BstMBI GATC 8 cut(s) 142, 381, 429, 504, 678, 759, 1012, 1088
BstMWI GCNNNNNNNGC 2 cut(s) 376, 700
BstNI CCWGG 3 cut(s) 782, 863, 896
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 5 cut(s) 357, 595, 780, 861, 894
BstUI CGCG 9 cut(s) 60, 232, 278, 544, 617, 630, 662, 694, 733
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 2 cut(s) 142, 381
BstXI CCANNNNNNTGG 1 cut(s) 997
BstYI RGATCY 2 cut(s) 142, 381
BsuRI GGCC 1 cut(s) 239
BtrI CACGTC 2 cut(s) 333, 798
BtsCI GGATG 4 cut(s) 22, 963, 991, 1105
BtsIMutI CAGTG 3 cut(s) 460, 529, 1029
Cac8I GCNNGC 2 cut(s) 45, 1062
CaiI CAGNNNCTG 1 cut(s) 1060
CfoI GCGC 8 cut(s) 60, 234, 544, 630, 662, 694, 733, 861
Cfr13I GGNCC 4 cut(s) 238, 248, 593, 865
CseI GACGC 3 cut(s) 204, 284, 460
Csp6I GTAC 3 cut(s) 709, 778, 823
CviAII CATG 6 cut(s) 64, 409, 718, 809, 835, 869
CviQI GTAC 3 cut(s) 709, 778, 823
DdeI CTNAG 4 cut(s) 76, 489, 804, 1032
DpnI GATC 8 cut(s) 144, 383, 431, 506, 680, 761, 1014, 1090
DpnII GATC 8 cut(s) 142, 381, 429, 504, 678, 759, 1012, 1088
DraI TTTAAA 1 cut(s) 292
DriI GACNNNNNGTC 1 cut(s) 799
Eam1104I CTCTTC 2 cut(s) 120, 719
Eam1105I GACNNNNNGTC 1 cut(s) 799
EarI CTCTTC 2 cut(s) 120, 719
EciI GGCGGA 1 cut(s) 500
Eco130I CCWWGG 1 cut(s) 990
Eco24I GRGCYC 2 cut(s) 49, 287
Eco47I GGWCC 3 cut(s) 248, 593, 865
EcoRII CCWGG 3 cut(s) 780, 861, 894
EcoT14I CCWWGG 1 cut(s) 990
EcoT38I GRGCYC 2 cut(s) 49, 287
ErhI CCWWGG 1 cut(s) 990
Esp3I CGTCTC 1 cut(s) 807
FaeI CATG 6 cut(s) 67, 412, 721, 812, 838, 872
FaiI YATR 7 cut(s) 23, 65, 410, 719, 810, 836, 870
FaqI GGGAC 2 cut(s) 234, 479
FatI CATG 6 cut(s) 63, 408, 717, 808, 834, 868
FauI CCCGC 2 cut(s) 36, 406
FbaI TGATCA 2 cut(s) 759, 1012
Fnu4HI GCNGC 5 cut(s) 61, 191, 371, 424, 540
FokI GGATG 4 cut(s) 29, 970, 998, 1092
FriOI GRGCYC 2 cut(s) 49, 287
Fsp4HI GCNGC 5 cut(s) 61, 191, 371, 424, 540
GlaI GCGC 8 cut(s) 59, 233, 543, 629, 661, 693, 732, 860
GluI GCNGC 5 cut(s) 61, 191, 371, 424, 540
HaeIII GGCC 1 cut(s) 239
HapII CCGG 5 cut(s) 159, 184, 359, 374, 596
HgaI GACGC 3 cut(s) 204, 284, 460
HhaI GCGC 8 cut(s) 60, 234, 544, 630, 662, 694, 733, 861
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 6 cut(s) 67, 412, 721, 812, 838, 872
Hin6I GCGC 8 cut(s) 58, 232, 542, 628, 660, 692, 731, 859
HinP1I GCGC 8 cut(s) 58, 232, 542, 628, 660, 692, 731, 859
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 1 cut(s) 569
HpaII CCGG 5 cut(s) 159, 184, 359, 374, 596
HphI GGTGA 5 cut(s) 515, 631, 733, 926, 1013
Hpy166II GTNNAC 2 cut(s) 69, 267
Hpy188I TCNGA 3 cut(s) 351, 484, 1056
Hpy188III TCNNGA 2 cut(s) 14, 89
Hpy8I GTNNAC 2 cut(s) 69, 267
Hpy99I CGWCG 9 cut(s) 101, 104, 198, 224, 227, 278, 337, 476, 802
HpyAV CCTTC 7 cut(s) 270, 356, 489, 510, 571, 888, 955
HpyCH4IV ACGT 3 cut(s) 225, 332, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 700
HpyF3I CTNAG 4 cut(s) 76, 489, 804, 1032
HpySE526I ACGT 3 cut(s) 225, 332, 797
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 6 cut(s) 67, 412, 721, 812, 838, 872
HspAI GCGC 8 cut(s) 58, 232, 542, 628, 660, 692, 731, 859
KpnI GGTACC 1 cut(s) 781
Ksp22I TGATCA 2 cut(s) 759, 1012
Kzo9I GATC 8 cut(s) 142, 381, 429, 504, 678, 759, 1012, 1088
LmnI GCTCC 4 cut(s) 367, 376, 700, 1000
LweI GCATC 4 cut(s) 712, 976, 1047, 1057
MaeII ACGT 3 cut(s) 225, 332, 797
MaeIII GTNAC 1 cut(s) 434
MalI GATC 8 cut(s) 144, 383, 431, 506, 680, 761, 1014, 1090
MboI GATC 8 cut(s) 142, 381, 429, 504, 678, 759, 1012, 1088
MboII GAAGA 9 cut(s) 116, 125, 131, 137, 376, 652, 736, 757, 1010
MfeI CAATTG 1 cut(s) 950
MflI RGATCY 2 cut(s) 142, 381
MhlI GDGCHC 2 cut(s) 49, 287
MluCI AATT 4 cut(s) 888, 936, 950, 1096
MlyI GAGTC 1 cut(s) 563
MseI TTAA 2 cut(s) 53, 291
MspI CCGG 5 cut(s) 159, 184, 359, 374, 596
MspR9I CCNGG 5 cut(s) 359, 597, 782, 863, 896
MunI CAATTG 1 cut(s) 950
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 3 cut(s) 782, 863, 896
MvnI CGCG 9 cut(s) 60, 232, 278, 544, 617, 630, 662, 694, 733
MwoI GCNNNNNNNGC 2 cut(s) 376, 700
NciI CCSGG 2 cut(s) 359, 597
NdeII GATC 8 cut(s) 142, 381, 429, 504, 678, 759, 1012, 1088
NlaIII CATG 6 cut(s) 67, 412, 721, 812, 838, 872
NlaIV GGNNCC 6 cut(s) 144, 250, 369, 594, 654, 779
NmuCI GTSAC 1 cut(s) 434
NspI RCATGY 1 cut(s) 67
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 108, 564
PctI GAATGC 1 cut(s) 31
PflFI GACNNNGTC 2 cut(s) 9, 470
PfoI TCCNGGA 1 cut(s) 595
PkrI GCNGC 5 cut(s) 62, 192, 372, 425, 541
PleI GAGTC 1 cut(s) 563
PpsI GAGTC 1 cut(s) 563
Psp6I CCWGG 3 cut(s) 780, 861, 894
PspGI CCWGG 3 cut(s) 780, 861, 894
PspN4I GGNNCC 6 cut(s) 144, 250, 369, 594, 654, 779
PspPI GGNCC 4 cut(s) 238, 248, 593, 865
PstNI CAGNNNCTG 1 cut(s) 1060
PsuI RGATCY 2 cut(s) 142, 381
PsyI GACNNNGTC 2 cut(s) 9, 470
RsaI GTAC 3 cut(s) 710, 779, 824
RsaNI GTAC 3 cut(s) 709, 778, 823
SaqAI TTAA 2 cut(s) 53, 291
SatI GCNGC 5 cut(s) 61, 191, 371, 424, 540
Sau3AI GATC 8 cut(s) 142, 381, 429, 504, 678, 759, 1012, 1088
Sau96I GGNCC 4 cut(s) 238, 248, 593, 865
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 5 cut(s) 359, 597, 782, 863, 896
SduI GDGCHC 2 cut(s) 49, 287
SfaNI GCATC 4 cut(s) 712, 976, 1047, 1057
SinI GGWCC 3 cut(s) 248, 593, 865
SmlI CTYRAG 2 cut(s) 1038, 1076
SmoI CTYRAG 2 cut(s) 1038, 1076
Sse9I AATT 4 cut(s) 888, 936, 950, 1096
StyD4I CCNGG 5 cut(s) 357, 595, 780, 861, 894
StyI CCWWGG 1 cut(s) 990
TaiI ACGT 3 cut(s) 228, 335, 800
TaqI TCGA 4 cut(s) 90, 208, 503, 567
TasI AATT 4 cut(s) 888, 936, 950, 1096
TauI GCSGC 5 cut(s) 63, 193, 373, 426, 542
Tru1I TTAA 2 cut(s) 53, 291
Tru9I TTAA 2 cut(s) 53, 291
TscAI CASTG 3 cut(s) 467, 536, 1036
TseFI GTSAC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 4 cut(s) 38, 138, 376, 974
TspGWI ACGGA 2 cut(s) 422, 765
TspRI CASTG 3 cut(s) 467, 536, 1036
Tth111I GACNNNGTC 2 cut(s) 9, 470
VpaK11BI GGWCC 3 cut(s) 248, 593, 865
XceI RCATGY 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.