Rmu_sc0006417.1_g000010
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006417.1
OG0002549
Physical Location & Seq
Forward (+)
78140 .. 80416
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
atgatgatgagcagcggccgcatcacacttcctaagggtttccgattccggccctccgatgaggagctgctgagtcattacttggagaagaagaatcagcgcaaggatcccgaagtggaggacatcatccctgaaatcaatgtgtgcgagcacgagcctcgcgacttaccagccctggtgttcacaagggcggtatttctggacagggagtggttcaccatggcggactctccggacatggagtggtacttcttcagtccgcgagtttttaaacacagcaaaagcaaaagcactcgatccaacaggaccacggaggaaggctactggaagaagcaaggcaaggaccgcagaatcatgactcgggcacgttctgataagcagatcggggggaagaggatcttgaccttctaccaaactgatggagtgcaaaaaaaacagaagactgactgggttattcatgagtattatctcactaaggccgattctaatgagcagatcggggattttgttctctgccgcttgaagaaaaagtccgacaagtctgatcatgatgagcaggaaggtccatgctacagtatggccttcattgatgttgaaaatcaatcatccaaagagctgggaaatgttctttcgatttctgttgaaggtcaacctgatagctgcaattcatctgattccaatatggttgaagagctacttgatgagccaggaaatcaacctccgccacctcaactacagtcaccaataaagctgggtaatgtttcacacaccaccaatgtccatattgatgaatgtcgtaagaggaaatatcaatttgcggataatgactcttctgagtcttctcctaccaaaaataatcatatttcaaccaatgatgttgatgaactagttagcaacacttcatcttattctgaaagtcatgctgcagatgctattccaaagtattccagctttgtggcagccagctgcataattatatgttcgatcaagaggattgatctgaatgccatatatgccccaccaaattctagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

344

Amino Acids

39.3

Weight (kDa)

5.79

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 156 7.3e-33 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 162, 262
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 9 cut(s) 15, 19, 191, 224, 260, 346, 517, 722, 818
AclWI GGATC 4 cut(s) 101, 114, 291, 404
AcoI YGGCCR 1 cut(s) 16
AcsI RAATTY 1 cut(s) 1024
AcuI CTGAAG 1 cut(s) 238
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 5 cut(s) 523, 596, 644, 689, 867
AhlI ACTAGT 1 cut(s) 886
AjnI CCWGG 2 cut(s) 174, 706
AluBI AGCT 8 cut(s) 67, 616, 660, 694, 751, 951, 966, 1032
AluI AGCT 8 cut(s) 67, 616, 660, 694, 751, 951, 966, 1032
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 4 cut(s) 101, 114, 291, 404
Ama87I CYCGRG 1 cut(s) 360
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 4 cut(s) 16, 50, 477, 579
ApeKI GCWGC 6 cut(s) 12, 67, 660, 923, 959, 966
ApoI RAATTY 1 cut(s) 1024
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 4 cut(s) 51, 306, 343, 563
AsuHPI GGTGA 2 cut(s) 208, 732
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 3 cut(s) 306, 343, 563
AxyI CCTNAGG 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 367
BamHI GGATCC 1 cut(s) 106
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 2 cut(s) 446, 831
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 6 cut(s) 24, 54, 647, 910, 953, 971
BccI CCATC 1 cut(s) 413
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 2 cut(s) 176, 708
BclI TGATCA 1 cut(s) 544
BcuI ACTAGT 1 cut(s) 886
BfaI CTAG 2 cut(s) 887, 1029
BfmI CTRYAG 3 cut(s) 571, 734, 924
BisI GCNGC 9 cut(s) 13, 16, 19, 68, 517, 661, 924, 960, 967
BlsI GCNGC 9 cut(s) 14, 17, 20, 69, 518, 662, 925, 961, 968
Bme1390I CCNGG 2 cut(s) 176, 708
Bme18I GGWCC 3 cut(s) 306, 343, 563
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 4 cut(s) 51, 306, 343, 563
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 2 cut(s) 176, 708
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 2 cut(s) 30, 919
BmuI ACTGGG 1 cut(s) 457
BpiI GAAGAC 2 cut(s) 446, 831
BsaJI CCNNGG 3 cut(s) 174, 219, 309
BsaWI WCCGGW 1 cut(s) 232
Bse1I ACTGG 2 cut(s) 329, 452
Bse21I CCTNAGG 1 cut(s) 33
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 2 cut(s) 176, 708
BseDI CCNNGG 3 cut(s) 174, 219, 309
BseGI GGATG 2 cut(s) 126, 605
BseMII CTCAG 2 cut(s) 62, 825
BseNI ACTGG 2 cut(s) 329, 452
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 367
BseX3I CGGCCG 1 cut(s) 16
BseXI GCAGC 6 cut(s) 24, 54, 647, 910, 953, 971
BseYI CCCAGC 2 cut(s) 616, 751
Bsh1236I CGCG 2 cut(s) 162, 262
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 4 cut(s) 18, 52, 479, 581
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 2 cut(s) 49, 233
BsmI GAATGC 1 cut(s) 1009
BsnI GGCC 4 cut(s) 18, 52, 479, 581
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 153, 367
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 8 cut(s) 106, 296, 381, 396, 495, 544, 984, 997
Bsp19I CCATGG 1 cut(s) 219
Bsp68I TCGCGA 1 cut(s) 162
BspACI CCGC 9 cut(s) 15, 19, 191, 224, 260, 346, 517, 722, 818
BspANI GGCC 4 cut(s) 18, 52, 479, 581
BspCNI CTCAG 2 cut(s) 63, 826
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 2 cut(s) 162, 262
BspHI TCATGA 3 cut(s) 354, 457, 547
BspLI GGNNCC 1 cut(s) 108
BspMAI CTGCAG 1 cut(s) 928
BspPI GGATC 4 cut(s) 101, 114, 291, 404
BspQI GCTCTTC 1 cut(s) 684
BsrI ACTGG 2 cut(s) 329, 452
BssECI CCNNGG 3 cut(s) 174, 219, 309
BssMI GATC 8 cut(s) 106, 296, 381, 396, 495, 544, 984, 997
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 2 cut(s) 176, 708
Bst4CI ACNGT 2 cut(s) 575, 738
Bst6I CTCTTC 3 cut(s) 386, 684, 835
BstC8I GCNNGC 2 cut(s) 149, 964
BstDEI CTNAG 4 cut(s) 33, 71, 474, 834
BstDSI CCRYGG 2 cut(s) 219, 309
BstF5I GGATG 2 cut(s) 126, 605
BstFNI CGCG 2 cut(s) 162, 262
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 8 cut(s) 109, 299, 384, 399, 498, 547, 987, 1000
BstMBI GATC 8 cut(s) 106, 296, 381, 396, 495, 544, 984, 997
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 4 cut(s) 18, 345, 929, 1013
BstNI CCWGG 2 cut(s) 176, 708
BstSCI CCNGG 2 cut(s) 174, 706
BstSFI CTRYAG 3 cut(s) 571, 734, 924
BstSLI GKGCMC 1 cut(s) 367
BstUI CGCG 2 cut(s) 162, 262
BstV1I GCAGC 6 cut(s) 24, 54, 647, 910, 953, 971
BstV2I GAAGAC 2 cut(s) 446, 831
BstX2I RGATCY 2 cut(s) 106, 396
BstXI CCANNNNNNTGG 3 cut(s) 419, 616, 955
BstYI RGATCY 2 cut(s) 106, 396
BstZI CGGCCG 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 33
BsuRI GGCC 4 cut(s) 18, 52, 479, 581
BtgI CCRYGG 2 cut(s) 219, 309
BtsCI GGATG 2 cut(s) 126, 605
BtuMI TCGCGA 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 149, 964
CciI TCATGA 3 cut(s) 354, 457, 547
CciNI GCGGCCGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 4 cut(s) 51, 306, 343, 563
Csp6I GTAC 1 cut(s) 247
CviAII CATG 7 cut(s) 220, 238, 355, 458, 548, 567, 920
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 4 cut(s) 33, 71, 474, 834
DpnI GATC 8 cut(s) 108, 298, 383, 398, 497, 546, 986, 999
DpnII GATC 8 cut(s) 106, 296, 381, 396, 495, 544, 984, 997
DraI TTTAAA 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 16
EagI CGGCCG 1 cut(s) 16
Eam1104I CTCTTC 3 cut(s) 386, 684, 835
EarI CTCTTC 3 cut(s) 386, 684, 835
EciI GGCGGA 2 cut(s) 239, 711
EclXI CGGCCG 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 3 cut(s) 306, 343, 563
Eco52I CGGCCG 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 360
EcoRII CCWGG 2 cut(s) 174, 706
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 7 cut(s) 223, 241, 358, 461, 551, 570, 923
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 681, 713
FatI CATG 7 cut(s) 219, 237, 354, 457, 547, 566, 919
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 9 cut(s) 13, 16, 19, 68, 517, 661, 924, 960, 967
FokI GGATG 2 cut(s) 113, 592
Fsp4HI GCNGC 9 cut(s) 13, 16, 19, 68, 517, 661, 924, 960, 967
FspBI CTAG 2 cut(s) 887, 1029
GlaI GCGC 1 cut(s) 101
GluI GCNGC 9 cut(s) 13, 16, 19, 68, 517, 661, 924, 960, 967
GsaI CCCAGC 2 cut(s) 620, 755
HaeIII GGCC 4 cut(s) 18, 52, 479, 581
HapII CCGG 2 cut(s) 49, 233
HhaI GCGC 1 cut(s) 102
Hin1II CATG 7 cut(s) 223, 241, 358, 461, 551, 570, 923
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 650
HindII GTYRAC 1 cut(s) 650
HpaII CCGG 2 cut(s) 49, 233
HphI GGTGA 2 cut(s) 208, 732
Hpy166II GTNNAC 3 cut(s) 183, 216, 650
Hpy188I TCNGA 9 cut(s) 44, 58, 373, 535, 544, 673, 835, 913, 1002
Hpy188III TCNNGA 9 cut(s) 110, 161, 200, 233, 355, 400, 458, 548, 988
Hpy8I GTNNAC 3 cut(s) 183, 216, 650
HpyAV CCTTC 5 cut(s) 311, 415, 554, 592, 638
HpyCH4III ACNGT 2 cut(s) 575, 738
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 427, 663, 926, 969
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 345, 929, 1013
HpyF3I CTNAG 4 cut(s) 33, 71, 474, 834
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 7 cut(s) 223, 241, 358, 461, 551, 570, 923
HspAI GCGC 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 8 cut(s) 106, 296, 381, 396, 495, 544, 984, 997
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 6 cut(s) 24, 54, 647, 910, 953, 971
LweI GCATC 2 cut(s) 30, 919
MaeI CTAG 2 cut(s) 887, 1029
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 1 cut(s) 738
MalI GATC 8 cut(s) 108, 298, 383, 398, 497, 546, 986, 999
MboI GATC 8 cut(s) 106, 296, 381, 396, 495, 544, 984, 997
MflI RGATCY 2 cut(s) 106, 396
MhlI GDGCHC 2 cut(s) 153, 367
MluCI AATT 4 cut(s) 664, 812, 972, 1024
MlyI GAGTC 5 cut(s) 82, 221, 352, 821, 845
MmeI TCCRAC 2 cut(s) 324, 558
MroI TCCGGA 1 cut(s) 232
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 786
MspA1I CMGCKG 2 cut(s) 15, 966
MspI CCGG 2 cut(s) 49, 233
MspR9I CCNGG 2 cut(s) 176, 708
Mva1269I GAATGC 1 cut(s) 1009
MvaI CCWGG 2 cut(s) 176, 708
MvnI CGCG 2 cut(s) 162, 262
MwoI GCNNNNNNNGC 4 cut(s) 18, 345, 929, 1013
NcoI CCATGG 1 cut(s) 219
NdeII GATC 8 cut(s) 106, 296, 381, 396, 495, 544, 984, 997
NlaIII CATG 7 cut(s) 223, 241, 358, 461, 551, 570, 923
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 738
NotI GCGGCCGC 1 cut(s) 16
NruI TCGCGA 1 cut(s) 162
PagI TCATGA 3 cut(s) 354, 457, 547
PciSI GCTCTTC 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 1009
PfeI GAWTC 5 cut(s) 45, 94, 351, 482, 674
PkrI GCNGC 9 cut(s) 14, 17, 20, 69, 518, 662, 925, 961, 968
PleI GAGTC 5 cut(s) 81, 221, 352, 821, 844
PpsI GAGTC 5 cut(s) 81, 221, 352, 821, 844
Psp6I CCWGG 2 cut(s) 174, 706
PspFI CCCAGC 2 cut(s) 616, 751
PspGI CCWGG 2 cut(s) 174, 706
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 4 cut(s) 51, 306, 343, 563
PstI CTGCAG 1 cut(s) 928
PsuI RGATCY 2 cut(s) 106, 396
PvuII CAGCTG 1 cut(s) 966
RruI TCGCGA 1 cut(s) 162
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 786
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 9 cut(s) 13, 16, 19, 68, 517, 661, 924, 960, 967
Sau3AI GATC 8 cut(s) 106, 296, 381, 396, 495, 544, 984, 997
Sau96I GGNCC 4 cut(s) 51, 306, 343, 563
SchI GAGTC 5 cut(s) 82, 221, 352, 821, 845
ScrFI CCNGG 2 cut(s) 176, 708
SduI GDGCHC 2 cut(s) 153, 367
SfaNI GCATC 2 cut(s) 30, 919
SfcI CTRYAG 3 cut(s) 571, 734, 924
SinI GGWCC 3 cut(s) 306, 343, 563
SmiMI CAYNNNNRTG 1 cut(s) 786
SpeI ACTAGT 1 cut(s) 886
Sse9I AATT 4 cut(s) 664, 812, 972, 1024
SsiI CCGC 9 cut(s) 15, 19, 191, 224, 260, 346, 517, 722, 818
SspMI CTAG 2 cut(s) 887, 1029
StyD4I CCNGG 2 cut(s) 174, 706
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 575, 738
TaiI ACGT 1 cut(s) 370
TaqI TCGA 3 cut(s) 295, 632, 983
TasI AATT 4 cut(s) 664, 812, 972, 1024
TauI GCSGC 3 cut(s) 18, 21, 519
TfiI GAWTC 5 cut(s) 45, 94, 351, 482, 674
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseFI GTSAC 1 cut(s) 738
TseI GCWGC 6 cut(s) 12, 67, 660, 923, 959, 966
Tsp45I GTSAC 1 cut(s) 738
TspDTI ATGAA 6 cut(s) 446, 574, 657, 804, 891, 897
TspGWI ACGGA 1 cut(s) 326
VpaK11BI GGWCC 3 cut(s) 306, 343, 563
XapI RAATTY 1 cut(s) 1024
XspI CTAG 2 cut(s) 887, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.