Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006513.1

Orthogroup ID

OG0001603

Physical Location & Seq

Genomic Coordinates Forward (+)

36284 .. 37941

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgttgacattctactatgccttcgtcaagacaaactgtttgctgctcatcacgataaattccattggctgcttcatcgaaaccgtgtaccttgttgtgttcatgatatatgcaacaccaaaatccagggcaccaaacgtgttagggtttgcgttcggaattgttcagatgattatgatcctcgtctacaggaagaaaaccaagatagctgtcttgacggaattccgtctaggtgatctgataccaagcgttgctgctccactaaatgatgacatgacagtagcaattgtcattaattctcgatcggaagctggggacgcaaagaagagttctgaaactgatcatgatcagaatccattggagggccggcccaacggcaaggcgaccttggccgctgcctacggcgtcatcttgagaaggggctcaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0015144 GO:0016020 GO:0016021 GO:0022414 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

143

Amino Acids

15.69

Weight (kDa)

9.17

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	4 - 41	2.5e-06	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001603)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24880 FvH4_2g24890 FvH4_2g24900 FvH4_2g24901
malus_domestica	MD11G1299200.v1.1
prunus_persica	Prupe.8G253500_v2.0.a1
pyrus_communis	pycom11g26290
rosa_chinensis	RchiOBHm_Chr6g0292721 RchiOBHm_Chr6g0292761 RchiOBHm_Chr6g0292771 RchiOBHm_Chr6g0292781 RchiOBHm_Chr6g0292811
rosa_laevigata	RLG00000011990 RLG00000011991 RLG00000011992 RLG00000011993 RLG00000011996
rosa_multiflora	Rmu_sc0006513.1_g000007 Rmu_sc0006513.1_g000008 Rmu_sc0007398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174680 Rroxscaffold_7G00174690 Rroxscaffold_7G00174700 Rroxscaffold_7G00174740
rosa_rugosa	Rorug06G0229200 Rorug06G0229500 Rorug06G0229600 Rorug06G0229900
rosa_samantha	Rh6AG342600 Rh6AG342900 Rh6AG343000 Rh6AG343100 Rh6AG343200 Rh6BG349800 Rh6BG349900 Rh6BG350000 Rh6BG350100 Rh6BG350200 Rh6CG356700 Rh6CG357000 Rh6CG357100 Rh6CG357300 Rh6DG342700 Rh6DG342800 Rh6DG343200
rosa_wichuraiana	Rw6G029880 Rw6G029890 Rw6G029900 Rw6G029910 Rw6G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	2 cut(s)	58, 221
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	209, 311
AluI	AGCT	2 cut(s)	209, 311
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	3 cut(s)	364, 368, 390
ApeKI	GCWGC	4 cut(s)	43, 69, 254, 395
ApoI	RAATTY	2 cut(s)	58, 221
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
AseI	ATTAAT	1 cut(s)	294
AspS9I	GGNCC	2 cut(s)	364, 369
AsuHPI	GGTGA	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	425
BbvI	GCAGC	4 cut(s)	30, 56, 241, 382
BceAI	ACGGC	2 cut(s)	391, 418
BciT130I	CCWGG	1 cut(s)	127
BclI	TGATCA	2 cut(s)	340, 346
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	187
BisI	GCNGC	5 cut(s)	44, 70, 255, 393, 396
BlsI	GCNGC	5 cut(s)	45, 71, 256, 394, 397
Bme1390I	CCNGG	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	364, 369
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	127
BsaBI	GATNNNNATC	3 cut(s)	176, 345, 351
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	126, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse118I	RCCGGY	1 cut(s)	366
Bse8I	GATNNNNATC	3 cut(s)	176, 345, 351
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	126, 387
BseJI	GATNNNNATC	3 cut(s)	176, 345, 351
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	4 cut(s)	30, 56, 241, 382
BseYI	CCCAGC	1 cut(s)	311
Bsh1285I	CGRYCG	1 cut(s)	305
BshFI	GGCC	3 cut(s)	366, 370, 392
BshNI	GGYRCC	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	3 cut(s)	366, 370, 392
Bsp1286I	GDGCHC	2 cut(s)	133, 425
Bsp143I	GATC	5 cut(s)	177, 235, 302, 340, 346
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	3 cut(s)	366, 370, 392
BspHI	TCATGA	2 cut(s)	102, 343
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	366
BssECI	CCNNGG	2 cut(s)	126, 387
BssMI	GATC	5 cut(s)	177, 235, 302, 340, 346
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	3 cut(s)	38, 85, 280
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	368
BstKTI	GATC	5 cut(s)	180, 238, 305, 343, 349
BstMBI	GATC	5 cut(s)	177, 235, 302, 340, 346
BstMCI	CGRYCG	1 cut(s)	305
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 389
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	133
BstV1I	GCAGC	4 cut(s)	30, 56, 241, 382
BsuRI	GGCC	3 cut(s)	366, 370, 392
Cac8I	GCNNGC	1 cut(s)	368
CciI	TCATGA	2 cut(s)	102, 343
Cfr10I	RCCGGY	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	364, 369
CseI	GACGC	2 cut(s)	326, 394
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	103, 274, 344
CviJI	RGCY	7 cut(s)	69, 209, 311, 366, 370, 392, 423
CviKI_1	RGCY	7 cut(s)	69, 209, 311, 366, 370, 392, 423
CviQI	GTAC	1 cut(s)	88
DpnI	GATC	5 cut(s)	179, 237, 304, 342, 348
DpnII	GATC	5 cut(s)	177, 235, 302, 340, 346
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	3 cut(s)	106, 277, 347
FaiI	YATR	7 cut(s)	18, 104, 109, 111, 176, 275, 345
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	3 cut(s)	102, 273, 343
FbaI	TGATCA	2 cut(s)	340, 346
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	44, 70, 255, 393, 396
FriOI	GRGCYC	1 cut(s)	425
FseI	GGCCGGCC	1 cut(s)	370
Fsp4HI	GCNGC	5 cut(s)	44, 70, 255, 393, 396
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	5 cut(s)	44, 70, 255, 393, 396
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	366, 370, 392
HapII	CCGG	1 cut(s)	367
HgaI	GACGC	2 cut(s)	326, 394
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	106, 277, 347
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	3 cut(s)	6, 88, 187
Hpy188I	TCNGA	6 cut(s)	158, 168, 240, 307, 334, 351
Hpy188III	TCNNGA	7 cut(s)	28, 52, 103, 214, 300, 344, 412
Hpy8I	GTNNAC	3 cut(s)	6, 88, 187
HpyAV	CCTTC	2 cut(s)	31, 411
HpyCH4III	ACNGT	3 cut(s)	38, 85, 280
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 389
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	106, 277, 347
KroI	GCCGGC	1 cut(s)	366
KroNI	GCCGGC	1 cut(s)	368
Ksp22I	TGATCA	2 cut(s)	340, 346
Kzo9I	GATC	5 cut(s)	177, 235, 302, 340, 346
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	5 cut(s)	112, 139, 175, 297, 380
Lsp1109I	GCAGC	4 cut(s)	30, 56, 241, 382
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	138
MalI	GATC	5 cut(s)	179, 237, 304, 342, 348
MboI	GATC	5 cut(s)	177, 235, 302, 340, 346
MboII	GAAGA	2 cut(s)	205, 337
MfeI	CAATTG	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	133, 425
MluCI	AATT	6 cut(s)	58, 159, 221, 285, 295, 426
MnlI	CCTC	2 cut(s)	191, 355
MroNI	GCCGGC	1 cut(s)	366
MseI	TTAA	2 cut(s)	294, 430
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	127
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	317, 389
NaeI	GCCGGC	1 cut(s)	368
NdeII	GATC	5 cut(s)	177, 235, 302, 340, 346
NgoMIV	GCCGGC	1 cut(s)	366
NlaIII	CATG	3 cut(s)	106, 277, 347
NlaIV	GGNNCC	1 cut(s)	132
PagI	TCATGA	2 cut(s)	102, 343
PdiI	GCCGGC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	5 cut(s)	45, 71, 256, 394, 397
Ple19I	CGATCG	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	364, 369
PvuI	CGATCG	1 cut(s)	305
RigI	GGCCGGCC	1 cut(s)	370
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	294, 430
SatI	GCNGC	5 cut(s)	44, 70, 255, 393, 396
Sau3AI	GATC	5 cut(s)	177, 235, 302, 340, 346
Sau96I	GGNCC	2 cut(s)	364, 369
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	2 cut(s)	133, 425
SetI	ASST	6 cut(s)	93, 141, 211, 235, 313, 389
SfcI	CTRYAG	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	6 cut(s)	58, 159, 221, 285, 295, 426
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	3 cut(s)	38, 85, 280
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	78, 301
TasI	AATT	6 cut(s)	58, 159, 221, 285, 295, 426
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	2 cut(s)	294, 430
Tru9I	TTAA	2 cut(s)	294, 430
TseI	GCWGC	4 cut(s)	43, 69, 254, 395
TspDTI	ATGAA	2 cut(s)	64, 91
TspGWI	ACGGA	2 cut(s)	215, 233
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	2 cut(s)	58, 221
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.