Rmu_ssc0000091.1_g000003

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000091.1
OG0002899
Physical Location & Seq
Reverse (-)
14457 .. 15874
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1353 bp
atgttctaccggtactatgttcctcatctactacttcgtcaccagaatatccgaatcttgaagcccaaactttcatttcgaatttcaagggcatcatcttaccattattaccacaacctgaaccctactgatacccacaccaatttccccatcaagccaaaactttcttccttcattacagactctgaaatccaagctgaattttctcaccatgatccgggtgttgcccggataaacaatggcagctttggttgctcccccgcttctgttatctctgaattgcaacaatggcaactcaaatggctgcgccagccggactatttcttattcaatgagctccacaaggggatactcaaatcaagaaacacagttcaagaacttatcaacgcacaggatgttgatgaaatttccattgtagataatgccaccacagcagtagccatagacttgcagctgatgcagtgggccttctctgaaggcaaattcaagaaaggggatgctgtcatcatactgcagtgtgcttatggcgcagtgaagaactcgatcaaggcctatttttcgtgtgctggcgggtatgttattgaagttccatttcaatttccagtgaattacactgaagaaattataagtgaatttcggatggctttggtgaaggaaaaggctagtggtagaagagtcagattagcgatgattgatcatgttacttccatgccatatgctgtacttccagttaagaaattggttaaagtttgcagggaagaaggtgttgatctagttttcatagatggggctcatggtgttgggtgtgtagatgttgacatgcaagaaattggagcagatttttacactagtaatctgcacaagtggttcttctcccctgcttcggttgcatttttatattgtaggaagtcagtcacacatttagaattgcatcatcctatggtgtctcatgactatggggttgtggagttcacaaataggtttgaaggaggaattgagggaatcaaaaggaggaatcatgatgctgttgttgtgatgggtaagatgttggcaaaggcttggggaaccaatcttgggtctccgccagatatgtgtgcaagcatgatcatggtgggaataccggcttgtttggaggtttcaagtgatgatgatgcttttaagttaaggacacatttaagggagaaatttggtgttgaagtccacatatattaccatatgccaaaacatgaagaggtggcaacaacaacagggtatggtcgagtttctcatcaagtctacaacaaagttgatgactattataagttcagagatgcaattaatcagcttgtttgtgatgggttcacctgtgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

450

Amino Acids

51.14

Weight (kDa)

7.06

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 89 - 306 2e-18 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 626, 1299
AccI GTMKAC 1 cut(s) 1275
AciI CCGC 3 cut(s) 261, 570, 1082
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 6 cut(s) 81, 200, 405, 482, 632, 1184
AcuI CTGAAG 2 cut(s) 495, 636
AfaI GTAC 2 cut(s) 14, 723
AfiI CCNNNNNNNGG 3 cut(s) 217, 883, 1074
AgeI ACCGGT 1 cut(s) 9
AhlI ACTAGT 1 cut(s) 848
AjuI GAANNNNNNNTTGG 2 cut(s) 151, 183
AluBI AGCT 5 cut(s) 197, 246, 337, 454, 1324
AluI AGCT 5 cut(s) 197, 246, 337, 454, 1324
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 2 cut(s) 951, 1083
AlwI GGATC 1 cut(s) 209
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 2 cut(s) 465, 549
ApeKI GCWGC 3 cut(s) 243, 304, 451
ApoI RAATTY 6 cut(s) 81, 200, 405, 482, 632, 1184
AseI ATTAAT 1 cut(s) 1317
AsiGI ACCGGT 1 cut(s) 9
AspLEI GCGC 2 cut(s) 309, 530
AspS9I GGNCC 1 cut(s) 465
AsuC2I CCSGG 2 cut(s) 219, 229
AsuHPI GGTGA 4 cut(s) 32, 200, 661, 1333
AsuII TTCGAA 1 cut(s) 79
BanII GRGCYC 2 cut(s) 339, 793
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 3 cut(s) 255, 291, 463
BccI CCATC 5 cut(s) 158, 634, 779, 1030, 1328
BciVI GTATCC 1 cut(s) 342
BclI TGATCA 2 cut(s) 694, 1104
BcnI CCSGG 2 cut(s) 219, 229
BcoDI GTCTC 2 cut(s) 951, 1083
BcuI ACTAGT 1 cut(s) 848
BfaI CTAG 3 cut(s) 663, 773, 849
BfmI CTRYAG 1 cut(s) 512
BfuI GTATCC 1 cut(s) 342
BisI GCNGC 3 cut(s) 244, 305, 452
BlsI GCNGC 3 cut(s) 245, 306, 453
Bme1390I CCNGG 2 cut(s) 219, 229
BmgT120I GGNCC 1 cut(s) 465
BmiI GGNNCC 1 cut(s) 1066
BmrFI CCNGG 2 cut(s) 219, 229
BmsI GCATC 7 cut(s) 101, 447, 487, 940, 1012, 1141, 1300
Bpu14I TTCGAA 1 cut(s) 79
BpuMI CCSGG 2 cut(s) 219, 229
BsaI GGTCTC 1 cut(s) 1083
BsaWI WCCGGW 1 cut(s) 9
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 883, 1074
Bse118I RCCGGY 2 cut(s) 9, 1120
Bse1I ACTGG 2 cut(s) 602, 728
BseGI GGATG 4 cut(s) 400, 502, 645, 934
BseLI CCNNNNNNNGG 3 cut(s) 217, 883, 1074
BseNI ACTGG 2 cut(s) 602, 728
BseXI GCAGC 3 cut(s) 255, 291, 463
BsgI GTGCAG 1 cut(s) 842
BshFI GGCC 2 cut(s) 467, 551
BshTI ACCGGT 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 5 cut(s) 10, 218, 229, 314, 1121
BslI CCNNNNNNNGG 3 cut(s) 217, 883, 1074
BsmAI GTCTC 2 cut(s) 951, 1083
BsnI GGCC 2 cut(s) 467, 551
Bso31I GGTCTC 1 cut(s) 1083
Bsp119I TTCGAA 1 cut(s) 79
Bsp1286I GDGCHC 2 cut(s) 339, 793
Bsp143I GATC 5 cut(s) 214, 543, 694, 769, 1104
BspACI CCGC 3 cut(s) 261, 570, 1082
BspANI GGCC 2 cut(s) 467, 551
BspHI TCATGA 2 cut(s) 949, 1018
BspLI GGNNCC 1 cut(s) 1066
BspMAI CTGCAG 1 cut(s) 516
BspPI GGATC 1 cut(s) 209
BspT104I TTCGAA 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 1083
BsrFI RCCGGY 2 cut(s) 9, 1120
BsrI ACTGG 2 cut(s) 602, 728
BssAI RCCGGY 2 cut(s) 9, 1120
BssMI GATC 5 cut(s) 214, 543, 694, 769, 1104
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 2 cut(s) 667, 1224
BstAPI GCANNNNNTGC 1 cut(s) 457
BstBI TTCGAA 1 cut(s) 79
BstC8I GCNNGC 3 cut(s) 311, 568, 1099
BstF5I GGATG 4 cut(s) 400, 502, 645, 934
BstHHI GCGC 2 cut(s) 309, 530
BstKTI GATC 5 cut(s) 217, 546, 697, 772, 1107
BstMAI GTCTC 2 cut(s) 951, 1083
BstMBI GATC 5 cut(s) 214, 543, 694, 769, 1104
BstMWI GCNNNNNNNGC 7 cut(s) 252, 289, 310, 431, 457, 527, 887
BstNSI RCATGY 1 cut(s) 823
BstSCI CCNGG 2 cut(s) 217, 227
BstSFI CTRYAG 1 cut(s) 512
BstV1I GCAGC 3 cut(s) 255, 291, 463
BsuI GTATCC 1 cut(s) 342
BsuRI GGCC 2 cut(s) 467, 551
BtgZI GCGATG 1 cut(s) 701
BtsCI GGATG 4 cut(s) 400, 502, 645, 934
BtsI GCAGTG 3 cut(s) 467, 521, 537
BtsIMutI CAGTG 5 cut(s) 467, 521, 537, 609, 612
Cac8I GCNNGC 3 cut(s) 311, 568, 1099
CaiI CAGNNNCTG 1 cut(s) 185
CciI TCATGA 2 cut(s) 949, 1018
CfoI GCGC 2 cut(s) 309, 530
Cfr10I RCCGGY 2 cut(s) 9, 1120
Cfr13I GGNCC 1 cut(s) 465
Csp6I GTAC 2 cut(s) 13, 722
CspAI ACCGGT 1 cut(s) 9
CviQI GTAC 2 cut(s) 13, 722
DpnI GATC 5 cut(s) 216, 545, 696, 771, 1106
DpnII GATC 5 cut(s) 214, 543, 694, 769, 1104
Eam1104I CTCTTC 2 cut(s) 667, 1224
EarI CTCTTC 2 cut(s) 667, 1224
EciI GGCGGA 1 cut(s) 1071
Ecl136II GAGCTC 1 cut(s) 337
Eco147I AGGCCT 1 cut(s) 551
Eco24I GRGCYC 2 cut(s) 339, 793
Eco31I GGTCTC 1 cut(s) 1083
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 2 cut(s) 495, 636
EcoICRI GAGCTC 1 cut(s) 337
EcoT38I GRGCYC 2 cut(s) 339, 793
FalI AAGNNNNNCTT 2 cut(s) 854, 886
FauI CCCGC 2 cut(s) 268, 563
FauNDI CATATG 2 cut(s) 715, 1215
FbaI TGATCA 2 cut(s) 694, 1104
FblI GTMKAC 1 cut(s) 1275
Fnu4HI GCNGC 3 cut(s) 244, 305, 452
FokI GGATG 4 cut(s) 407, 509, 652, 921
FriOI GRGCYC 2 cut(s) 339, 793
Fsp4HI GCNGC 3 cut(s) 244, 305, 452
FspBI CTAG 3 cut(s) 663, 773, 849
GlaI GCGC 2 cut(s) 308, 529
GluI GCNGC 3 cut(s) 244, 305, 452
HaeIII GGCC 2 cut(s) 467, 551
HapII CCGG 5 cut(s) 10, 218, 229, 314, 1121
HhaI GCGC 2 cut(s) 309, 530
Hin6I GCGC 2 cut(s) 307, 528
HinP1I GCGC 2 cut(s) 307, 528
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HinfI GANTC 5 cut(s) 54, 182, 675, 1002, 1015
HpaII CCGG 5 cut(s) 10, 218, 229, 314, 1121
HphI GGTGA 4 cut(s) 32, 200, 661, 1333
Hpy166II GTNNAC 5 cut(s) 817, 972, 1201, 1276, 1341
Hpy188I TCNGA 7 cut(s) 53, 187, 277, 475, 639, 680, 1307
Hpy188III TCNNGA 6 cut(s) 58, 360, 374, 487, 950, 1019
Hpy8I GTNNAC 5 cut(s) 817, 972, 1201, 1276, 1341
HpyAV CCTTC 6 cut(s) 181, 470, 478, 646, 755, 980
HpyCH4III ACNGT 1 cut(s) 370
HpyF10VI GCNNNNNNNGC 7 cut(s) 252, 289, 310, 431, 457, 527, 887
HspAI GCGC 2 cut(s) 307, 528
Ksp22I TGATCA 2 cut(s) 694, 1104
Kzo9I GATC 5 cut(s) 214, 543, 694, 769, 1104
LmnI GCTCC 3 cut(s) 260, 342, 833
Lsp1109I GCAGC 3 cut(s) 255, 291, 463
LweI GCATC 7 cut(s) 101, 447, 487, 940, 1012, 1141, 1300
MaeI CTAG 3 cut(s) 663, 773, 849
MaeIII GTNAC 3 cut(s) 38, 700, 913
MalI GATC 5 cut(s) 216, 545, 696, 771, 1106
MboI GATC 5 cut(s) 214, 543, 694, 769, 1104
MboII GAAGA 7 cut(s) 159, 547, 629, 684, 770, 862, 1241
MhlI GDGCHC 2 cut(s) 339, 793
MlyI GAGTC 2 cut(s) 176, 684
MnlI CCTC 6 cut(s) 33, 983, 991, 1005, 1126, 1225
MseI TTAA 6 cut(s) 732, 744, 1158, 1163, 1175, 1317
MslI CAYNNNNRTG 2 cut(s) 954, 1106
MspA1I CMGCKG 1 cut(s) 454
MspI CCGG 5 cut(s) 10, 218, 229, 314, 1121
MspR9I CCNGG 2 cut(s) 219, 229
MwoI GCNNNNNNNGC 7 cut(s) 252, 289, 310, 431, 457, 527, 887
NciI CCSGG 2 cut(s) 219, 229
NdeI CATATG 2 cut(s) 715, 1215
NdeII GATC 5 cut(s) 214, 543, 694, 769, 1104
NlaIV GGNNCC 1 cut(s) 1066
NmuCI GTSAC 2 cut(s) 38, 913
NspI RCATGY 1 cut(s) 823
NspV TTCGAA 1 cut(s) 79
PagI TCATGA 2 cut(s) 949, 1018
PceI AGGCCT 1 cut(s) 551
PfeI GAWTC 3 cut(s) 54, 1002, 1015
PinAI ACCGGT 1 cut(s) 9
PkrI GCNGC 3 cut(s) 245, 306, 453
PleI GAGTC 2 cut(s) 176, 683
PpsI GAGTC 2 cut(s) 176, 683
PshBI ATTAAT 1 cut(s) 1317
PsiI TTATAA 2 cut(s) 626, 1299
Psp124BI GAGCTC 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 1066
PspPI GGNCC 1 cut(s) 465
PstI CTGCAG 1 cut(s) 516
PstNI CAGNNNCTG 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 454
RsaI GTAC 2 cut(s) 14, 723
RsaNI GTAC 2 cut(s) 13, 722
RseI CAYNNNNRTG 2 cut(s) 954, 1106
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 6 cut(s) 732, 744, 1158, 1163, 1175, 1317
SatI GCNGC 3 cut(s) 244, 305, 452
Sau3AI GATC 5 cut(s) 214, 543, 694, 769, 1104
Sau96I GGNCC 1 cut(s) 465
SchI GAGTC 2 cut(s) 176, 684
ScrFI CCNGG 2 cut(s) 219, 229
SduI GDGCHC 2 cut(s) 339, 793
SfaNI GCATC 7 cut(s) 101, 447, 487, 940, 1012, 1141, 1300
SfcI CTRYAG 1 cut(s) 512
SfuI TTCGAA 1 cut(s) 79
SmiMI CAYNNNNRTG 2 cut(s) 954, 1106
SpeI ACTAGT 1 cut(s) 848
SseBI AGGCCT 1 cut(s) 551
SsiI CCGC 3 cut(s) 261, 570, 1082
SspMI CTAG 3 cut(s) 663, 773, 849
SstI GAGCTC 1 cut(s) 339
StuI AGGCCT 1 cut(s) 551
StyD4I CCNGG 2 cut(s) 217, 227
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 3 cut(s) 79, 542, 1258
TatI WGTACW 1 cut(s) 721
TfiI GAWTC 3 cut(s) 54, 1002, 1015
Tru1I TTAA 6 cut(s) 732, 744, 1158, 1163, 1175, 1317
Tru9I TTAA 6 cut(s) 732, 744, 1158, 1163, 1175, 1317
TscAI CASTG 5 cut(s) 467, 521, 537, 609, 619
TseFI GTSAC 2 cut(s) 38, 913
TseI GCWGC 3 cut(s) 243, 304, 451
Tsp45I GTSAC 2 cut(s) 38, 913
TspDTI ATGAA 5 cut(s) 63, 163, 417, 769, 1242
TspRI CASTG 5 cut(s) 467, 521, 537, 609, 619
VspI ATTAAT 1 cut(s) 1317
XapI RAATTY 6 cut(s) 81, 200, 405, 482, 632, 1184
XceI RCATGY 1 cut(s) 823
XmiI GTMKAC 1 cut(s) 1275
XspI CTAG 3 cut(s) 663, 773, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.