Rroxscaffold_108G00451460

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000108
OG0000037
Physical Location & Seq
Forward (+)
7463 .. 8341
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_108G00451460.1

Sequence Viewer

Length: 507 bp
ATGTTCTCGGGTCGTTCTGCTAGGCAGGTTTCGACAATGATCCTTCCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTCGCGACGTCGCAGACACAGCGAACCGCCCACGTCGCCGCGATCCGAAAACTTCACCGGACCATTCAATCGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGGCTCCACTCCTGGTGGTGCCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCGGAACCCAAAAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCCTAAAAGTAACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos Exo_endo_phos_2 zf-RVT

Protein Analysis

168

Amino Acids

18.66

Weight (kDa)

10.18

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000037)

Species Orthologous Gene IDs
pyrus_communis pycom12555g00040 pycom12555g00090 pycom2132g00020 pycom2247g00020 pycom2303g00010 pycom2303g00070 pycom2303g00140 pycom2575g00040 pycom520g01330 pycom553g00030 pycom961g00020
rosa_laevigata RLG00000005153 RLG00000005811 RLG00000030826 RLG00000030829
rosa_multiflora Rmu_sc0001696.1_g000004
rosa_roxburghii Rroxscaffold_100G00451140 Rroxscaffold_100G00451150 Rroxscaffold_100G00451160 Rroxscaffold_102G00450910 Rroxscaffold_102G00450930 Rroxscaffold_103G00450540 Rroxscaffold_103G00450580 Rroxscaffold_103G00450590 Rroxscaffold_104G00444650 Rroxscaffold_104G00444700 Rroxscaffold_104G00444730 Rroxscaffold_104G00444770 Rroxscaffold_104G00444780 Rroxscaffold_104G00444820 Rroxscaffold_104G00444850 Rroxscaffold_104G00444890 Rroxscaffold_105G00447110 Rroxscaffold_105G00447150 Rroxscaffold_105G00447200 Rroxscaffold_105G00447210 Rroxscaffold_105G00447240 Rroxscaffold_105G00447250 Rroxscaffold_106G00451440 Rroxscaffold_106G00451450 Rroxscaffold_107G00442420 Rroxscaffold_107G00442430 Rroxscaffold_107G00442460 Rroxscaffold_107G00442490 Rroxscaffold_107G00442500 Rroxscaffold_107G00442530 Rroxscaffold_107G00442580 Rroxscaffold_107G00442610 Rroxscaffold_107G00442670 Rroxscaffold_108G00451460 Rroxscaffold_108G00451470 Rroxscaffold_110G00451500 Rroxscaffold_110G00451520 Rroxscaffold_111G00451570 Rroxscaffold_112G00451600 Rroxscaffold_113G00451610 Rroxscaffold_113G00451640 Rroxscaffold_114G00451660 Rroxscaffold_114G00451670 Rroxscaffold_115G00451700 Rroxscaffold_116G00451720 Rroxscaffold_117G00451760 Rroxscaffold_118G00451790 Rroxscaffold_118G00451800 Rroxscaffold_120G00451830 Rroxscaffold_122G00451890 Rroxscaffold_122G00451900 Rroxscaffold_123G00451930 Rroxscaffold_125G00451980 Rroxscaffold_126G00452010 Rroxscaffold_127G00452020 Rroxscaffold_127G00452030 Rroxscaffold_128G00452070 Rroxscaffold_12G00450630 Rroxscaffold_138G00452200 Rroxscaffold_139G00452210 Rroxscaffold_13G00448640 Rroxscaffold_13G00448680 Rroxscaffold_13G00448690 Rroxscaffold_14G00441900 Rroxscaffold_14G00441910 Rroxscaffold_14G00441920 Rroxscaffold_14G00441940 Rroxscaffold_14G00441980 Rroxscaffold_14G00441990 Rroxscaffold_14G00442000 Rroxscaffold_14G00442020 Rroxscaffold_14G00442040 Rroxscaffold_15G00447480 Rroxscaffold_15G00447520 Rroxscaffold_15G00447530 Rroxscaffold_15G00447590 Rroxscaffold_15G00447600 Rroxscaffold_162G00450740 Rroxscaffold_162G00450760 Rroxscaffold_16G00446220 Rroxscaffold_16G00446260 Rroxscaffold_17G00435370 Rroxscaffold_17G00435380 Rroxscaffold_17G00435420 Rroxscaffold_17G00435520 Rroxscaffold_17G00435540 Rroxscaffold_17G00435580 Rroxscaffold_17G00435610 Rroxscaffold_17G00435690 Rroxscaffold_17G00435710 Rroxscaffold_17G00435720 Rroxscaffold_17G00435770 Rroxscaffold_17G00435790 Rroxscaffold_17G00435850 Rroxscaffold_17G00435880 Rroxscaffold_18G00446040 Rroxscaffold_18G00446050 Rroxscaffold_18G00446070 Rroxscaffold_18G00446100 Rroxscaffold_18G00446140 Rroxscaffold_18G00446150 Rroxscaffold_18G00446180 Rroxscaffold_18G00446190 Rroxscaffold_19G00448870 Rroxscaffold_19G00448880 Rroxscaffold_19G00448900 Rroxscaffold_19G00448910 Rroxscaffold_19G00448960 Rroxscaffold_19G00448980 Rroxscaffold_1G00000030 Rroxscaffold_1G00000040 Rroxscaffold_1G00000060 Rroxscaffold_1G00000080 Rroxscaffold_20G00445050 Rroxscaffold_20G00445090 Rroxscaffold_20G00445120 Rroxscaffold_21G00439420 Rroxscaffold_21G00439450 Rroxscaffold_21G00439480 Rroxscaffold_21G00439510 Rroxscaffold_21G00439550 Rroxscaffold_21G00439600 Rroxscaffold_21G00439650 Rroxscaffold_22G00439870 Rroxscaffold_22G00439890 Rroxscaffold_22G00439900 Rroxscaffold_22G00439930 Rroxscaffold_22G00439970 Rroxscaffold_22G00440020 Rroxscaffold_23G00451030 Rroxscaffold_23G00451060 Rroxscaffold_24G00444940 Rroxscaffold_24G00444980 Rroxscaffold_24G00445020 Rroxscaffold_25G00450150 Rroxscaffold_25G00450180 Rroxscaffold_25G00450190 Rroxscaffold_26G00447750 Rroxscaffold_26G00447800 Rroxscaffold_26G00447810 Rroxscaffold_26G00447820 Rroxscaffold_27G00446580 Rroxscaffold_28G00446880 Rroxscaffold_28G00446890 Rroxscaffold_28G00446900 Rroxscaffold_28G00446920 Rroxscaffold_29G00441580 Rroxscaffold_29G00441610 Rroxscaffold_29G00441620 Rroxscaffold_29G00441650 Rroxscaffold_29G00441660 Rroxscaffold_29G00441700 Rroxscaffold_29G00441720 Rroxscaffold_29G00441770 Rroxscaffold_29G00441790 Rroxscaffold_29G00441800 Rroxscaffold_29G00441840 Rroxscaffold_29G00441880 Rroxscaffold_30G00449470 Rroxscaffold_31G00438090 Rroxscaffold_31G00438100 Rroxscaffold_31G00438150 Rroxscaffold_31G00438160 Rroxscaffold_31G00438200 Rroxscaffold_31G00438240 Rroxscaffold_31G00438280 Rroxscaffold_32G00442770 Rroxscaffold_32G00442780 Rroxscaffold_32G00442820 Rroxscaffold_33G00439680 Rroxscaffold_33G00439750 Rroxscaffold_33G00439780 Rroxscaffold_33G00439790 Rroxscaffold_33G00439830 Rroxscaffold_34G00443130 Rroxscaffold_34G00443160 Rroxscaffold_34G00443190 Rroxscaffold_34G00443240 Rroxscaffold_34G00443260 Rroxscaffold_34G00443300 Rroxscaffold_34G00443320 Rroxscaffold_34G00443340 Rroxscaffold_34G00443350 Rroxscaffold_34G00443360 Rroxscaffold_34G00443380 Rroxscaffold_35G00441020 Rroxscaffold_35G00441030 Rroxscaffold_35G00441040 Rroxscaffold_35G00441070 Rroxscaffold_35G00441100 Rroxscaffold_35G00441130 Rroxscaffold_35G00441150 Rroxscaffold_35G00441200 Rroxscaffold_35G00441240 Rroxscaffold_35G00441250 Rroxscaffold_35G00441270 Rroxscaffold_36G00440060 Rroxscaffold_36G00440090 Rroxscaffold_36G00440130 Rroxscaffold_36G00440180 Rroxscaffold_36G00440210 Rroxscaffold_36G00440220 Rroxscaffold_36G00440230 Rroxscaffold_36G00440240 Rroxscaffold_36G00440250 Rroxscaffold_37G00445140 Rroxscaffold_37G00445200 Rroxscaffold_37G00445220 Rroxscaffold_38G00444460 Rroxscaffold_38G00444490 Rroxscaffold_38G00444510 Rroxscaffold_38G00444520 Rroxscaffold_38G00444540 Rroxscaffold_38G00444560 Rroxscaffold_38G00444580 Rroxscaffold_38G00444590 Rroxscaffold_38G00444630 Rroxscaffold_39G00448220 Rroxscaffold_40G00447660 Rroxscaffold_40G00447670 Rroxscaffold_41G00451100 Rroxscaffold_41G00451120 Rroxscaffold_42G00450440 Rroxscaffold_43G00449830 Rroxscaffold_43G00449880 Rroxscaffold_43G00449910 Rroxscaffold_43G00449950 Rroxscaffold_44G00440490 Rroxscaffold_44G00440530 Rroxscaffold_44G00440560 Rroxscaffold_44G00440570 Rroxscaffold_44G00440590 Rroxscaffold_44G00440630 Rroxscaffold_45G00438860 Rroxscaffold_45G00438910 Rroxscaffold_45G00438940 Rroxscaffold_45G00438990 Rroxscaffold_47G00443990 Rroxscaffold_47G00444010 Rroxscaffold_47G00444040 Rroxscaffold_47G00444050 Rroxscaffold_47G00444070 Rroxscaffold_47G00444080 Rroxscaffold_47G00444100 Rroxscaffold_48G00448440 Rroxscaffold_48G00448460 Rroxscaffold_48G00448480 Rroxscaffold_48G00448490 Rroxscaffold_48G00448530 Rroxscaffold_49G00438580 Rroxscaffold_49G00438610 Rroxscaffold_49G00438630 Rroxscaffold_49G00438640 Rroxscaffold_49G00438670 Rroxscaffold_49G00438690 Rroxscaffold_49G00438760 Rroxscaffold_49G00438770 Rroxscaffold_50G00444140 Rroxscaffold_50G00444150 Rroxscaffold_50G00444180 Rroxscaffold_50G00444220 Rroxscaffold_50G00444230 Rroxscaffold_50G00444270 Rroxscaffold_50G00444300 Rroxscaffold_50G00444310 Rroxscaffold_50G00444320 Rroxscaffold_50G00444340 Rroxscaffold_50G00444360 Rroxscaffold_51G00447830 Rroxscaffold_51G00447870 Rroxscaffold_51G00447890 Rroxscaffold_51G00447910 Rroxscaffold_52G00439320 Rroxscaffold_52G00439330 Rroxscaffold_52G00439340 Rroxscaffold_52G00439350 Rroxscaffold_52G00439370 Rroxscaffold_52G00439400 Rroxscaffold_53G00449660 Rroxscaffold_53G00449710 Rroxscaffold_53G00449720 Rroxscaffold_53G00449750 Rroxscaffold_53G00449760 Rroxscaffold_53G00449780 Rroxscaffold_54G00443480 Rroxscaffold_54G00443510 Rroxscaffold_54G00443520 Rroxscaffold_54G00443550 Rroxscaffold_54G00443570 Rroxscaffold_54G00443600 Rroxscaffold_54G00443640 Rroxscaffold_55G00450030 Rroxscaffold_55G00450040 Rroxscaffold_55G00450100 Rroxscaffold_57G00443080 Rroxscaffold_58G00449010 Rroxscaffold_58G00449060 Rroxscaffold_59G00442090 Rroxscaffold_59G00442140 Rroxscaffold_59G00442160 Rroxscaffold_59G00442190 Rroxscaffold_59G00442230 Rroxscaffold_60G00448300 Rroxscaffold_60G00448310 Rroxscaffold_60G00448350 Rroxscaffold_60G00448390 Rroxscaffold_61G00450000 Rroxscaffold_62G00437920 Rroxscaffold_62G00437970 Rroxscaffold_62G00437980 Rroxscaffold_62G00437990 Rroxscaffold_62G00438000 Rroxscaffold_62G00438010 Rroxscaffold_62G00438020 Rroxscaffold_64G00450660 Rroxscaffold_64G00450680 Rroxscaffold_64G00450720 Rroxscaffold_65G00445290 Rroxscaffold_65G00445310 Rroxscaffold_65G00445410 Rroxscaffold_66G00437580 Rroxscaffold_66G00437590 Rroxscaffold_66G00437810 Rroxscaffold_66G00437880 Rroxscaffold_67G00448120 Rroxscaffold_67G00448160 Rroxscaffold_68G00446970 Rroxscaffold_68G00447020 Rroxscaffold_68G00447050 Rroxscaffold_68G00447060 Rroxscaffold_69G00446660 Rroxscaffold_69G00446690 Rroxscaffold_69G00446700 Rroxscaffold_69G00446720 Rroxscaffold_69G00446750 Rroxscaffold_69G00446800 Rroxscaffold_6G00387780 Rroxscaffold_6G00387810 Rroxscaffold_70G00446280 Rroxscaffold_70G00446320 Rroxscaffold_70G00446360 Rroxscaffold_70G00446370 Rroxscaffold_70G00446400 Rroxscaffold_71G00445610 Rroxscaffold_71G00445620 Rroxscaffold_71G00445640 Rroxscaffold_71G00445660 Rroxscaffold_71G00445670 Rroxscaffold_71G00445700 Rroxscaffold_71G00445760 Rroxscaffold_71G00445780 Rroxscaffold_72G00449360 Rroxscaffold_72G00449390 Rroxscaffold_72G00449420 Rroxscaffold_72G00449440 Rroxscaffold_73G00439010 Rroxscaffold_73G00439020 Rroxscaffold_73G00439040 Rroxscaffold_73G00439050 Rroxscaffold_73G00439070 Rroxscaffold_73G00439080 Rroxscaffold_73G00439100 Rroxscaffold_73G00439130 Rroxscaffold_73G00439150 Rroxscaffold_73G00439170 Rroxscaffold_73G00439200 Rroxscaffold_73G00439220 Rroxscaffold_73G00439230 Rroxscaffold_73G00439240 Rroxscaffold_73G00439260 Rroxscaffold_73G00439280 Rroxscaffold_74G00442900 Rroxscaffold_74G00442910 Rroxscaffold_74G00442930 Rroxscaffold_75G00447270 Rroxscaffold_75G00447320 Rroxscaffold_75G00447360 Rroxscaffold_75G00447400 Rroxscaffold_76G00448550 Rroxscaffold_77G00449160 Rroxscaffold_78G00449590 Rroxscaffold_78G00449600 Rroxscaffold_78G00449620 Rroxscaffold_78G00449650 Rroxscaffold_79G00450220 Rroxscaffold_79G00450230 Rroxscaffold_79G00450240 Rroxscaffold_80G00450260 Rroxscaffold_80G00450270 Rroxscaffold_80G00450340 Rroxscaffold_81G00450500 Rroxscaffold_81G00450510 Rroxscaffold_83G00450970 Rroxscaffold_83G00450990 Rroxscaffold_85G00451220 Rroxscaffold_85G00451240 Rroxscaffold_86G00451280 Rroxscaffold_87G00451310 Rroxscaffold_88G00451400 Rroxscaffold_89G00451420 Rroxscaffold_90G00448780 Rroxscaffold_90G00448790 Rroxscaffold_90G00448840 Rroxscaffold_91G00442970 Rroxscaffold_91G00443010 Rroxscaffold_92G00446420 Rroxscaffold_92G00446450 Rroxscaffold_92G00446470 Rroxscaffold_92G00446480 Rroxscaffold_92G00446510 Rroxscaffold_93G00440840 Rroxscaffold_93G00440870 Rroxscaffold_93G00440900 Rroxscaffold_93G00440940 Rroxscaffold_93G00440960 Rroxscaffold_93G00440980 Rroxscaffold_93G00441000 Rroxscaffold_94G00445840 Rroxscaffold_94G00445860 Rroxscaffold_94G00445890 Rroxscaffold_94G00445930 Rroxscaffold_94G00445980 Rroxscaffold_94G00446010 Rroxscaffold_95G00449210 Rroxscaffold_95G00449250 Rroxscaffold_95G00449280 Rroxscaffold_96G00449100 Rroxscaffold_97G00442290 Rroxscaffold_97G00442300 Rroxscaffold_97G00442310 Rroxscaffold_97G00442320 Rroxscaffold_97G00442380 Rroxscaffold_97G00442410 Rroxscaffold_98G00451360 Rroxscaffold_98G00451370 Rroxscaffold_99G00451200
rosa_samantha Rh6CG279700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 126
Acc36I ACCTGC 2 cut(s) 16, 41
AccB1I GGYRCC 2 cut(s) 314, 397
AccII CGCG 2 cut(s) 120, 156
AciI CCGC 6 cut(s) 48, 142, 154, 293, 404, 426
AclWI GGATC 3 cut(s) 34, 152, 425
AcoI YGGCCR 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 435
AgsI TTSAA 1 cut(s) 183
AjiI CACGTC 1 cut(s) 149
AjnI CCWGG 3 cut(s) 258, 307, 434
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 3 cut(s) 34, 152, 425
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 1 cut(s) 191
AspS9I GGNCC 2 cut(s) 175, 256
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 2 cut(s) 48, 162
AvaI CYCGRG 1 cut(s) 7
AvaII GGWCC 2 cut(s) 175, 256
BaeGI GKGCMC 1 cut(s) 319
BanI GGYRCC 2 cut(s) 314, 397
BanII GRGCYC 3 cut(s) 228, 302, 490
BbsI GAAGAC 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 228
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 3 cut(s) 260, 309, 436
BcnI CCSGG 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 2 cut(s) 21, 462
BfuAI ACCTGC 2 cut(s) 16, 41
BisI GCNGC 2 cut(s) 154, 293
BlsI GCNGC 2 cut(s) 155, 294
Bme1390I CCNGG 4 cut(s) 260, 309, 364, 436
Bme18I GGWCC 2 cut(s) 175, 256
BmeT110I CYCGRG 1 cut(s) 7
BmgBI CACGTC 1 cut(s) 149
BmgT120I GGNCC 2 cut(s) 175, 256
BmiI GGNNCC 4 cut(s) 301, 316, 368, 399
BmrFI CCNGG 4 cut(s) 260, 309, 364, 436
BmsI GCATC 1 cut(s) 452
BpiI GAAGAC 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 364
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 362, 434
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse118I RCCGGY 1 cut(s) 400
BseBI CCWGG 3 cut(s) 260, 309, 436
BseDI CCNNGG 2 cut(s) 362, 434
BseGI GGATG 1 cut(s) 422
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMII CTCAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 319
Bsh1236I CGCG 2 cut(s) 120, 156
BshFI GGCC 1 cut(s) 193
BshNI GGYRCC 2 cut(s) 314, 397
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 3 cut(s) 173, 364, 401
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 452
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 4 cut(s) 228, 302, 319, 490
Bsp143I GATC 4 cut(s) 39, 157, 430, 475
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 6 cut(s) 48, 142, 154, 293, 404, 426
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 242
BspFNI CGCG 2 cut(s) 120, 156
BspLI GGNNCC 4 cut(s) 301, 316, 368, 399
BspMI ACCTGC 2 cut(s) 16, 41
BspPI GGATC 3 cut(s) 34, 152, 425
BspT107I GGYRCC 2 cut(s) 314, 397
BsrFI RCCGGY 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 2 cut(s) 362, 434
BssMI GATC 4 cut(s) 39, 157, 430, 475
BssNI GRCGYC 1 cut(s) 123
Bst2UI CCWGG 3 cut(s) 260, 309, 436
Bst4CI ACNGT 1 cut(s) 469
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 422
BstFNI CGCG 2 cut(s) 120, 156
BstKTI GATC 4 cut(s) 42, 160, 433, 478
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 4 cut(s) 39, 157, 430, 475
BstMWI GCNNNNNNNGC 2 cut(s) 134, 150
BstNI CCWGG 3 cut(s) 260, 309, 436
BstSCI CCNGG 4 cut(s) 258, 307, 362, 434
BstSLI GKGCMC 1 cut(s) 319
BstUI CGCG 2 cut(s) 120, 156
BstV2I GAAGAC 1 cut(s) 473
BsuRI GGCC 1 cut(s) 193
BtrI CACGTC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 422
BtsIMutI CAGTG 1 cut(s) 113
BtuMI TCGCGA 1 cut(s) 120
BveI ACCTGC 2 cut(s) 16, 41
Cac8I GCNNGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 2 cut(s) 175, 256
CsiI ACCWGGT 1 cut(s) 258
CviAII CATG 1 cut(s) 195
CviJI RGCY 6 cut(s) 193, 226, 292, 300, 346, 488
CviKI_1 RGCY 6 cut(s) 193, 226, 292, 300, 346, 488
DdeI CTNAG 1 cut(s) 229
DpnI GATC 4 cut(s) 41, 159, 432, 477
DpnII GATC 4 cut(s) 39, 157, 430, 475
EaeI YGGCCR 1 cut(s) 191
EciI GGCGGA 2 cut(s) 415, 419
Ecl136II GAGCTC 1 cut(s) 226
Eco24I GRGCYC 3 cut(s) 228, 302, 490
Eco47I GGWCC 2 cut(s) 175, 256
Eco53kI GAGCTC 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 226
EcoRII CCWGG 3 cut(s) 258, 307, 434
EcoT38I GRGCYC 3 cut(s) 228, 302, 490
FaeI CATG 1 cut(s) 198
FaiI YATR 6 cut(s) 196, 210, 250, 357, 393, 452
FaqI GGGAC 1 cut(s) 394
FatI CATG 1 cut(s) 194
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 154, 293
FokI GGATG 1 cut(s) 409
FriOI GRGCYC 3 cut(s) 228, 302, 490
Fsp4HI GCNGC 2 cut(s) 154, 293
FspBI CTAG 2 cut(s) 21, 462
GluI GCNGC 2 cut(s) 154, 293
HaeIII GGCC 1 cut(s) 193
HapII CCGG 3 cut(s) 173, 364, 401
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 1 cut(s) 198
HinfI GANTC 3 cut(s) 213, 280, 407
HpaII CCGG 3 cut(s) 173, 364, 401
HphI GGTGA 2 cut(s) 48, 162
Hpy166II GTNNAC 2 cut(s) 56, 111
Hpy188I TCNGA 2 cut(s) 162, 475
Hpy188III TCNNGA 4 cut(s) 119, 217, 254, 504
Hpy8I GTNNAC 2 cut(s) 56, 111
Hpy99I CGWCG 3 cut(s) 125, 128, 153
HpyAV CCTTC 3 cut(s) 53, 95, 330
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 2 cut(s) 123, 148
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 150
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 2 cut(s) 123, 148
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 1 cut(s) 198
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Kzo9I GATC 4 cut(s) 39, 157, 430, 475
LmnI GCTCC 1 cut(s) 305
LweI GCATC 1 cut(s) 452
MabI ACCWGGT 1 cut(s) 258
MaeI CTAG 2 cut(s) 21, 462
MaeII ACGT 2 cut(s) 123, 148
MaeIII GTNAC 2 cut(s) 72, 418
MalI GATC 4 cut(s) 41, 159, 432, 477
MboI GATC 4 cut(s) 39, 157, 430, 475
MboII GAAGA 1 cut(s) 473
MhlI GDGCHC 4 cut(s) 228, 302, 319, 490
MluCI AATT 2 cut(s) 285, 328
MlyI GAGTC 2 cut(s) 289, 416
MnlI CCTC 1 cut(s) 99
MroNI GCCGGC 1 cut(s) 400
MseI TTAA 2 cut(s) 288, 336
MspI CCGG 3 cut(s) 173, 364, 401
MspR9I CCNGG 4 cut(s) 260, 309, 364, 436
MvaI CCWGG 3 cut(s) 260, 309, 436
MvnI CGCG 2 cut(s) 120, 156
MwoI GCNNNNNNNGC 2 cut(s) 134, 150
NaeI GCCGGC 1 cut(s) 402
NciI CCSGG 1 cut(s) 364
NdeII GATC 4 cut(s) 39, 157, 430, 475
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 1 cut(s) 198
NlaIV GGNNCC 4 cut(s) 301, 316, 368, 399
NruI TCGCGA 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 1 cut(s) 213
PkrI GCNGC 2 cut(s) 155, 294
PleI GAGTC 2 cut(s) 288, 415
PpsI GAGTC 2 cut(s) 288, 415
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 3 cut(s) 258, 307, 434
PspGI CCWGG 3 cut(s) 258, 307, 434
PspN4I GGNNCC 4 cut(s) 301, 316, 368, 399
PspPI GGNCC 2 cut(s) 175, 256
RruI TCGCGA 1 cut(s) 120
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 288, 336
SatI GCNGC 2 cut(s) 154, 293
Sau3AI GATC 4 cut(s) 39, 157, 430, 475
Sau96I GGNCC 2 cut(s) 175, 256
SchI GAGTC 2 cut(s) 289, 416
ScrFI CCNGG 4 cut(s) 260, 309, 364, 436
SduI GDGCHC 4 cut(s) 228, 302, 319, 490
SexAI ACCWGGT 1 cut(s) 258
SfaNI GCATC 1 cut(s) 452
SinI GGWCC 2 cut(s) 175, 256
Sse9I AATT 2 cut(s) 285, 328
SsiI CCGC 6 cut(s) 48, 142, 154, 293, 404, 426
SspMI CTAG 2 cut(s) 21, 462
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 4 cut(s) 258, 307, 362, 434
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 2 cut(s) 126, 151
TaqI TCGA 3 cut(s) 32, 186, 484
TasI AATT 2 cut(s) 285, 328
TauI GCSGC 2 cut(s) 156, 295
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 2 cut(s) 288, 336
Tru9I TTAA 2 cut(s) 288, 336
TscAI CASTG 1 cut(s) 113
TspGWI ACGGA 2 cut(s) 77, 313
TspRI CASTG 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 175, 256
XspI CTAG 2 cut(s) 21, 462
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.