Rroxscaffold_38G00444540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000038
OG0000037
Physical Location & Seq
Forward (+)
43076 .. 46443
3368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_38G00444540.1

Sequence Viewer

Length: 1359 bp
ATGGGGAGCCCGCAGGCCGTTACCAGGAGCACGCAGATGCCGAAGCACGCCGAGACGGCGCATGCTGCCTACCATGATCGCGTCGACGACGTCTCCACGGGCATATCAACAGCCCGGGCTTTGGCCGCCGCCGCAATCCGTAACGGTCCACGCCCCGAGTCGAGTGGCGGACCGGCTTGTGACCGTTCCACATCCGACCGAGGCGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCTCTTTTCAAACGCCTCGTGGTGCGACAGGGTCCGGGCACAACGGGGCTCTCACCCTCTATGGCGCCCCCTTCCGGGGGACTTGTTCCCGGTCCGCCTCGAGGACGCTTCTCCGGACTACAATTCGGACGCCTTACGACGCCAGATTCTCAAGCTGGGCTATTCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTAAAGCACTCGATCAACACGAGCGCACGACAGGAAACCGAGGTTTGACAACCACCGATTGTCGTGGCGTTGGTCGCCGAGGACTTGGTATTTATGCCAACCGCGTGACTGAGCACACGGGAGGCCATCATCCGTCCCATCCAACTCCCGAGGGGGTTGGGGGGGGGCAACGACGTGTGACGCCCAGGCAGACGTGCCCTCGGCCTAATGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCGTTTAGACATATTGAAGACGACGAAACCACCCGCACGATCACCGTCTCCGGGACGGCGGGGGAACGCTCTTTCATTCAAGTTCCTTGGCGCAATTCACGCCGGTGTTCAGTACGCCTGGGAGGGTCGATCAAGCGCAAGCACCGAAATGCAACACGCAAGACACTTGCCTCCTAGGATAAGGGGGCGCAGAGCCGCAAGACCCTCCGCCCCCAGCGTTGAAACATGTTCTCGGGTCGTTCTGCTAGGCAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCATTCCTTTGACAACGCTGGCACCGCGTAGGGAGACCCTGCAACGAGCACAGCAGTCGTACATGTCTAGCGACAAAACGCTTGAAATTGGACGTCAAGGGTGCAAAGACCCCAAGCCCACCGAATGTTCTGTATCCGAGACATCAAGCAACAACCTGGGAACCGTCGCAAGGTGCACACCAAAAGGCATGCCAATGCAAGGGGCACAGGCACTACTACGATGTCCTTCCCCTAACCGAATGGCTCAGGGAAGGAAAGGGTCGACAAGAGGCACCATTCCTTTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

452

Amino Acids

49.23

Weight (kDa)

10.65

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000037)

Species Orthologous Gene IDs
pyrus_communis pycom12555g00040 pycom12555g00090 pycom2132g00020 pycom2247g00020 pycom2303g00010 pycom2303g00070 pycom2303g00140 pycom2575g00040 pycom520g01330 pycom553g00030 pycom961g00020
rosa_laevigata RLG00000005153 RLG00000005811 RLG00000030826 RLG00000030829
rosa_multiflora Rmu_sc0001696.1_g000004
rosa_roxburghii Rroxscaffold_100G00451140 Rroxscaffold_100G00451150 Rroxscaffold_100G00451160 Rroxscaffold_102G00450910 Rroxscaffold_102G00450930 Rroxscaffold_103G00450540 Rroxscaffold_103G00450580 Rroxscaffold_103G00450590 Rroxscaffold_104G00444650 Rroxscaffold_104G00444700 Rroxscaffold_104G00444730 Rroxscaffold_104G00444770 Rroxscaffold_104G00444780 Rroxscaffold_104G00444820 Rroxscaffold_104G00444850 Rroxscaffold_104G00444890 Rroxscaffold_105G00447110 Rroxscaffold_105G00447150 Rroxscaffold_105G00447200 Rroxscaffold_105G00447210 Rroxscaffold_105G00447240 Rroxscaffold_105G00447250 Rroxscaffold_106G00451440 Rroxscaffold_106G00451450 Rroxscaffold_107G00442420 Rroxscaffold_107G00442430 Rroxscaffold_107G00442460 Rroxscaffold_107G00442490 Rroxscaffold_107G00442500 Rroxscaffold_107G00442530 Rroxscaffold_107G00442580 Rroxscaffold_107G00442610 Rroxscaffold_107G00442670 Rroxscaffold_108G00451460 Rroxscaffold_108G00451470 Rroxscaffold_110G00451500 Rroxscaffold_110G00451520 Rroxscaffold_111G00451570 Rroxscaffold_112G00451600 Rroxscaffold_113G00451610 Rroxscaffold_113G00451640 Rroxscaffold_114G00451660 Rroxscaffold_114G00451670 Rroxscaffold_115G00451700 Rroxscaffold_116G00451720 Rroxscaffold_117G00451760 Rroxscaffold_118G00451790 Rroxscaffold_118G00451800 Rroxscaffold_120G00451830 Rroxscaffold_122G00451890 Rroxscaffold_122G00451900 Rroxscaffold_123G00451930 Rroxscaffold_125G00451980 Rroxscaffold_126G00452010 Rroxscaffold_127G00452020 Rroxscaffold_127G00452030 Rroxscaffold_128G00452070 Rroxscaffold_12G00450630 Rroxscaffold_138G00452200 Rroxscaffold_139G00452210 Rroxscaffold_13G00448640 Rroxscaffold_13G00448680 Rroxscaffold_13G00448690 Rroxscaffold_14G00441900 Rroxscaffold_14G00441910 Rroxscaffold_14G00441920 Rroxscaffold_14G00441940 Rroxscaffold_14G00441980 Rroxscaffold_14G00441990 Rroxscaffold_14G00442000 Rroxscaffold_14G00442020 Rroxscaffold_14G00442040 Rroxscaffold_15G00447480 Rroxscaffold_15G00447520 Rroxscaffold_15G00447530 Rroxscaffold_15G00447590 Rroxscaffold_15G00447600 Rroxscaffold_162G00450740 Rroxscaffold_162G00450760 Rroxscaffold_16G00446220 Rroxscaffold_16G00446260 Rroxscaffold_17G00435370 Rroxscaffold_17G00435380 Rroxscaffold_17G00435420 Rroxscaffold_17G00435520 Rroxscaffold_17G00435540 Rroxscaffold_17G00435580 Rroxscaffold_17G00435610 Rroxscaffold_17G00435690 Rroxscaffold_17G00435710 Rroxscaffold_17G00435720 Rroxscaffold_17G00435770 Rroxscaffold_17G00435790 Rroxscaffold_17G00435850 Rroxscaffold_17G00435880 Rroxscaffold_18G00446040 Rroxscaffold_18G00446050 Rroxscaffold_18G00446070 Rroxscaffold_18G00446100 Rroxscaffold_18G00446140 Rroxscaffold_18G00446150 Rroxscaffold_18G00446180 Rroxscaffold_18G00446190 Rroxscaffold_19G00448870 Rroxscaffold_19G00448880 Rroxscaffold_19G00448900 Rroxscaffold_19G00448910 Rroxscaffold_19G00448960 Rroxscaffold_19G00448980 Rroxscaffold_1G00000030 Rroxscaffold_1G00000040 Rroxscaffold_1G00000060 Rroxscaffold_1G00000080 Rroxscaffold_20G00445050 Rroxscaffold_20G00445090 Rroxscaffold_20G00445120 Rroxscaffold_21G00439420 Rroxscaffold_21G00439450 Rroxscaffold_21G00439480 Rroxscaffold_21G00439510 Rroxscaffold_21G00439550 Rroxscaffold_21G00439600 Rroxscaffold_21G00439650 Rroxscaffold_22G00439870 Rroxscaffold_22G00439890 Rroxscaffold_22G00439900 Rroxscaffold_22G00439930 Rroxscaffold_22G00439970 Rroxscaffold_22G00440020 Rroxscaffold_23G00451030 Rroxscaffold_23G00451060 Rroxscaffold_24G00444940 Rroxscaffold_24G00444980 Rroxscaffold_24G00445020 Rroxscaffold_25G00450150 Rroxscaffold_25G00450180 Rroxscaffold_25G00450190 Rroxscaffold_26G00447750 Rroxscaffold_26G00447800 Rroxscaffold_26G00447810 Rroxscaffold_26G00447820 Rroxscaffold_27G00446580 Rroxscaffold_28G00446880 Rroxscaffold_28G00446890 Rroxscaffold_28G00446900 Rroxscaffold_28G00446920 Rroxscaffold_29G00441580 Rroxscaffold_29G00441610 Rroxscaffold_29G00441620 Rroxscaffold_29G00441650 Rroxscaffold_29G00441660 Rroxscaffold_29G00441700 Rroxscaffold_29G00441720 Rroxscaffold_29G00441770 Rroxscaffold_29G00441790 Rroxscaffold_29G00441800 Rroxscaffold_29G00441840 Rroxscaffold_29G00441880 Rroxscaffold_30G00449470 Rroxscaffold_31G00438090 Rroxscaffold_31G00438100 Rroxscaffold_31G00438150 Rroxscaffold_31G00438160 Rroxscaffold_31G00438200 Rroxscaffold_31G00438240 Rroxscaffold_31G00438280 Rroxscaffold_32G00442770 Rroxscaffold_32G00442780 Rroxscaffold_32G00442820 Rroxscaffold_33G00439680 Rroxscaffold_33G00439750 Rroxscaffold_33G00439780 Rroxscaffold_33G00439790 Rroxscaffold_33G00439830 Rroxscaffold_34G00443130 Rroxscaffold_34G00443160 Rroxscaffold_34G00443190 Rroxscaffold_34G00443240 Rroxscaffold_34G00443260 Rroxscaffold_34G00443300 Rroxscaffold_34G00443320 Rroxscaffold_34G00443340 Rroxscaffold_34G00443350 Rroxscaffold_34G00443360 Rroxscaffold_34G00443380 Rroxscaffold_35G00441020 Rroxscaffold_35G00441030 Rroxscaffold_35G00441040 Rroxscaffold_35G00441070 Rroxscaffold_35G00441100 Rroxscaffold_35G00441130 Rroxscaffold_35G00441150 Rroxscaffold_35G00441200 Rroxscaffold_35G00441240 Rroxscaffold_35G00441250 Rroxscaffold_35G00441270 Rroxscaffold_36G00440060 Rroxscaffold_36G00440090 Rroxscaffold_36G00440130 Rroxscaffold_36G00440180 Rroxscaffold_36G00440210 Rroxscaffold_36G00440220 Rroxscaffold_36G00440230 Rroxscaffold_36G00440240 Rroxscaffold_36G00440250 Rroxscaffold_37G00445140 Rroxscaffold_37G00445200 Rroxscaffold_37G00445220 Rroxscaffold_38G00444460 Rroxscaffold_38G00444490 Rroxscaffold_38G00444510 Rroxscaffold_38G00444520 Rroxscaffold_38G00444540 Rroxscaffold_38G00444560 Rroxscaffold_38G00444580 Rroxscaffold_38G00444590 Rroxscaffold_38G00444630 Rroxscaffold_39G00448220 Rroxscaffold_40G00447660 Rroxscaffold_40G00447670 Rroxscaffold_41G00451100 Rroxscaffold_41G00451120 Rroxscaffold_42G00450440 Rroxscaffold_43G00449830 Rroxscaffold_43G00449880 Rroxscaffold_43G00449910 Rroxscaffold_43G00449950 Rroxscaffold_44G00440490 Rroxscaffold_44G00440530 Rroxscaffold_44G00440560 Rroxscaffold_44G00440570 Rroxscaffold_44G00440590 Rroxscaffold_44G00440630 Rroxscaffold_45G00438860 Rroxscaffold_45G00438910 Rroxscaffold_45G00438940 Rroxscaffold_45G00438990 Rroxscaffold_47G00443990 Rroxscaffold_47G00444010 Rroxscaffold_47G00444040 Rroxscaffold_47G00444050 Rroxscaffold_47G00444070 Rroxscaffold_47G00444080 Rroxscaffold_47G00444100 Rroxscaffold_48G00448440 Rroxscaffold_48G00448460 Rroxscaffold_48G00448480 Rroxscaffold_48G00448490 Rroxscaffold_48G00448530 Rroxscaffold_49G00438580 Rroxscaffold_49G00438610 Rroxscaffold_49G00438630 Rroxscaffold_49G00438640 Rroxscaffold_49G00438670 Rroxscaffold_49G00438690 Rroxscaffold_49G00438760 Rroxscaffold_49G00438770 Rroxscaffold_50G00444140 Rroxscaffold_50G00444150 Rroxscaffold_50G00444180 Rroxscaffold_50G00444220 Rroxscaffold_50G00444230 Rroxscaffold_50G00444270 Rroxscaffold_50G00444300 Rroxscaffold_50G00444310 Rroxscaffold_50G00444320 Rroxscaffold_50G00444340 Rroxscaffold_50G00444360 Rroxscaffold_51G00447830 Rroxscaffold_51G00447870 Rroxscaffold_51G00447890 Rroxscaffold_51G00447910 Rroxscaffold_52G00439320 Rroxscaffold_52G00439330 Rroxscaffold_52G00439340 Rroxscaffold_52G00439350 Rroxscaffold_52G00439370 Rroxscaffold_52G00439400 Rroxscaffold_53G00449660 Rroxscaffold_53G00449710 Rroxscaffold_53G00449720 Rroxscaffold_53G00449750 Rroxscaffold_53G00449760 Rroxscaffold_53G00449780 Rroxscaffold_54G00443480 Rroxscaffold_54G00443510 Rroxscaffold_54G00443520 Rroxscaffold_54G00443550 Rroxscaffold_54G00443570 Rroxscaffold_54G00443600 Rroxscaffold_54G00443640 Rroxscaffold_55G00450030 Rroxscaffold_55G00450040 Rroxscaffold_55G00450100 Rroxscaffold_57G00443080 Rroxscaffold_58G00449010 Rroxscaffold_58G00449060 Rroxscaffold_59G00442090 Rroxscaffold_59G00442140 Rroxscaffold_59G00442160 Rroxscaffold_59G00442190 Rroxscaffold_59G00442230 Rroxscaffold_60G00448300 Rroxscaffold_60G00448310 Rroxscaffold_60G00448350 Rroxscaffold_60G00448390 Rroxscaffold_61G00450000 Rroxscaffold_62G00437920 Rroxscaffold_62G00437970 Rroxscaffold_62G00437980 Rroxscaffold_62G00437990 Rroxscaffold_62G00438000 Rroxscaffold_62G00438010 Rroxscaffold_62G00438020 Rroxscaffold_64G00450660 Rroxscaffold_64G00450680 Rroxscaffold_64G00450720 Rroxscaffold_65G00445290 Rroxscaffold_65G00445310 Rroxscaffold_65G00445410 Rroxscaffold_66G00437580 Rroxscaffold_66G00437590 Rroxscaffold_66G00437810 Rroxscaffold_66G00437880 Rroxscaffold_67G00448120 Rroxscaffold_67G00448160 Rroxscaffold_68G00446970 Rroxscaffold_68G00447020 Rroxscaffold_68G00447050 Rroxscaffold_68G00447060 Rroxscaffold_69G00446660 Rroxscaffold_69G00446690 Rroxscaffold_69G00446700 Rroxscaffold_69G00446720 Rroxscaffold_69G00446750 Rroxscaffold_69G00446800 Rroxscaffold_6G00387780 Rroxscaffold_6G00387810 Rroxscaffold_70G00446280 Rroxscaffold_70G00446320 Rroxscaffold_70G00446360 Rroxscaffold_70G00446370 Rroxscaffold_70G00446400 Rroxscaffold_71G00445610 Rroxscaffold_71G00445620 Rroxscaffold_71G00445640 Rroxscaffold_71G00445660 Rroxscaffold_71G00445670 Rroxscaffold_71G00445700 Rroxscaffold_71G00445760 Rroxscaffold_71G00445780 Rroxscaffold_72G00449360 Rroxscaffold_72G00449390 Rroxscaffold_72G00449420 Rroxscaffold_72G00449440 Rroxscaffold_73G00439010 Rroxscaffold_73G00439020 Rroxscaffold_73G00439040 Rroxscaffold_73G00439050 Rroxscaffold_73G00439070 Rroxscaffold_73G00439080 Rroxscaffold_73G00439100 Rroxscaffold_73G00439130 Rroxscaffold_73G00439150 Rroxscaffold_73G00439170 Rroxscaffold_73G00439200 Rroxscaffold_73G00439220 Rroxscaffold_73G00439230 Rroxscaffold_73G00439240 Rroxscaffold_73G00439260 Rroxscaffold_73G00439280 Rroxscaffold_74G00442900 Rroxscaffold_74G00442910 Rroxscaffold_74G00442930 Rroxscaffold_75G00447270 Rroxscaffold_75G00447320 Rroxscaffold_75G00447360 Rroxscaffold_75G00447400 Rroxscaffold_76G00448550 Rroxscaffold_77G00449160 Rroxscaffold_78G00449590 Rroxscaffold_78G00449600 Rroxscaffold_78G00449620 Rroxscaffold_78G00449650 Rroxscaffold_79G00450220 Rroxscaffold_79G00450230 Rroxscaffold_79G00450240 Rroxscaffold_80G00450260 Rroxscaffold_80G00450270 Rroxscaffold_80G00450340 Rroxscaffold_81G00450500 Rroxscaffold_81G00450510 Rroxscaffold_83G00450970 Rroxscaffold_83G00450990 Rroxscaffold_85G00451220 Rroxscaffold_85G00451240 Rroxscaffold_86G00451280 Rroxscaffold_87G00451310 Rroxscaffold_88G00451400 Rroxscaffold_89G00451420 Rroxscaffold_90G00448780 Rroxscaffold_90G00448790 Rroxscaffold_90G00448840 Rroxscaffold_91G00442970 Rroxscaffold_91G00443010 Rroxscaffold_92G00446420 Rroxscaffold_92G00446450 Rroxscaffold_92G00446470 Rroxscaffold_92G00446480 Rroxscaffold_92G00446510 Rroxscaffold_93G00440840 Rroxscaffold_93G00440870 Rroxscaffold_93G00440900 Rroxscaffold_93G00440940 Rroxscaffold_93G00440960 Rroxscaffold_93G00440980 Rroxscaffold_93G00441000 Rroxscaffold_94G00445840 Rroxscaffold_94G00445860 Rroxscaffold_94G00445890 Rroxscaffold_94G00445930 Rroxscaffold_94G00445980 Rroxscaffold_94G00446010 Rroxscaffold_95G00449210 Rroxscaffold_95G00449250 Rroxscaffold_95G00449280 Rroxscaffold_96G00449100 Rroxscaffold_97G00442290 Rroxscaffold_97G00442300 Rroxscaffold_97G00442310 Rroxscaffold_97G00442320 Rroxscaffold_97G00442380 Rroxscaffold_97G00442410 Rroxscaffold_98G00451360 Rroxscaffold_98G00451370 Rroxscaffold_99G00451200
rosa_samantha Rh6CG279700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 93, 1165
AbsI CCTCGAGG 1 cut(s) 356
AccB1I GGYRCC 3 cut(s) 321, 1090, 1340
AccI GTMKAC 2 cut(s) 84, 1331
AccII CGCG 3 cut(s) 81, 555, 1096
AccIII TCCGGA 1 cut(s) 370
AclWI GGATC 1 cut(s) 1065
AcoI YGGCCR 1 cut(s) 123
AcyI GRCGYC 6 cut(s) 90, 322, 387, 397, 632, 1162
AfaI GTAC 2 cut(s) 896, 1130
AflIII ACRYGT 3 cut(s) 625, 1007, 1131
AgsI TTSAA 7 cut(s) 244, 267, 684, 799, 862, 1004, 1154
AjiI CACGTC 2 cut(s) 626, 645
AjnI CCWGG 5 cut(s) 23, 635, 899, 1063, 1224
AleI CACNNNNGTG 1 cut(s) 885
AluBI AGCT 1 cut(s) 412
AluI AGCT 1 cut(s) 412
Alw21I GWGCWC 4 cut(s) 32, 567, 1120, 1247
Alw26I GTCTC 5 cut(s) 47, 97, 834, 1097, 1202
Alw44I GTGCAC 1 cut(s) 1243
AlwI GGATC 1 cut(s) 1065
Ama87I CYCGRG 5 cut(s) 114, 155, 356, 599, 1014
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 5 cut(s) 15, 123, 213, 574, 653
ApaLI GTGCAC 1 cut(s) 1243
ApeKI GCWGC 1 cut(s) 65
AspA2I CCTAGG 1 cut(s) 956
AspLEI GCGC 8 cut(s) 61, 206, 324, 477, 672, 875, 920, 972
AspS9I GGNCC 5 cut(s) 146, 170, 214, 289, 349
AsuC2I CCSGG 6 cut(s) 115, 116, 293, 333, 347, 834
AsuHPI GGTGA 2 cut(s) 302, 816
AvaI CYCGRG 5 cut(s) 114, 155, 356, 599, 1014
AvaII GGWCC 4 cut(s) 146, 170, 289, 349
AvrII CCTAGG 1 cut(s) 956
BaeGI GKGCMC 4 cut(s) 298, 650, 1247, 1276
BanI GGYRCC 3 cut(s) 321, 1090, 1340
BanII GRGCYC 2 cut(s) 11, 308
BauI CACGAG 2 cut(s) 274, 470
BbsI GAAGAC 1 cut(s) 806
Bbv12I GWGCWC 4 cut(s) 32, 567, 1120, 1247
BbvI GCAGC 1 cut(s) 52
BccI CCATC 4 cut(s) 227, 585, 597, 687
BceAI ACGGC 4 cut(s) 2, 72, 419, 854
BcgI CGANNNNNNTGC 2 cut(s) 1107, 1141
BciT130I CCWGG 5 cut(s) 25, 637, 901, 1065, 1226
BciVI GTATCC 1 cut(s) 1213
BcnI CCSGG 6 cut(s) 115, 116, 293, 333, 347, 834
BcoDI GTCTC 5 cut(s) 47, 97, 834, 1097, 1202
BfaI CTAG 3 cut(s) 957, 1028, 1137
BfoI RGCGCY 1 cut(s) 325
BfuI GTATCC 1 cut(s) 1213
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 5 cut(s) 66, 126, 129, 132, 978
BlnI CCTAGG 1 cut(s) 956
BlsI GCNGC 5 cut(s) 67, 127, 130, 133, 979
Bme18I GGWCC 4 cut(s) 146, 170, 289, 349
BmeT110I CYCGRG 5 cut(s) 114, 155, 356, 599, 1014
BmgBI CACGTC 2 cut(s) 626, 645
BmgT120I GGNCC 5 cut(s) 146, 170, 214, 289, 349
BmiI GGNNCC 7 cut(s) 8, 216, 290, 323, 1092, 1231, 1342
BmsI GCATC 3 cut(s) 27, 215, 742
BpiI GAAGAC 1 cut(s) 806
Bpu10I CCTNAGC 1 cut(s) 1314
BpuEI CTTGAG 1 cut(s) 392
BpuMI CCSGG 6 cut(s) 115, 116, 293, 333, 347, 834
Bsa29I ATCGAT 1 cut(s) 750
BsaHI GRCGYC 6 cut(s) 90, 322, 387, 397, 632, 1162
BsaI GGTCTC 1 cut(s) 1097
BsaWI WCCGGW 2 cut(s) 370, 422
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse118I RCCGGY 3 cut(s) 172, 211, 884
Bse1I ACTGG 1 cut(s) 1055
BseAI TCCGGA 1 cut(s) 370
BseBI CCWGG 5 cut(s) 25, 637, 901, 1065, 1226
BseCI ATCGAT 1 cut(s) 750
BseGI GGATG 4 cut(s) 191, 219, 580, 589
BseMII CTCAG 2 cut(s) 552, 1328
BseNI ACTGG 1 cut(s) 1055
BseSI GKGCMC 4 cut(s) 298, 650, 1247, 1276
BseXI GCAGC 1 cut(s) 52
BseYI CCCAGC 2 cut(s) 412, 995
Bsh1236I CGCG 3 cut(s) 81, 555, 1096
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 5 cut(s) 17, 125, 215, 576, 655
BshNI GGYRCC 3 cut(s) 321, 1090, 1340
BshVI ATCGAT 1 cut(s) 750
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 4 cut(s) 32, 567, 1120, 1247
BsiHKCI CYCGRG 5 cut(s) 114, 155, 356, 599, 1014
BslFI GGGAC 3 cut(s) 350, 571, 849
BsmAI GTCTC 5 cut(s) 47, 97, 834, 1097, 1202
BsmBI CGTCTC 3 cut(s) 47, 97, 834
BsmFI GGGAC 3 cut(s) 350, 571, 849
BsmI GAATGC 1 cut(s) 1071
BsnI GGCC 5 cut(s) 17, 125, 215, 576, 655
Bso31I GGTCTC 1 cut(s) 1097
BsoBI CYCGRG 5 cut(s) 114, 155, 356, 599, 1014
Bsp1286I GDGCHC 9 cut(s) 11, 32, 298, 308, 567, 650, 1120, 1247, 1276
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 5 cut(s) 76, 463, 821, 911, 1057
BspANI GGCC 5 cut(s) 17, 125, 215, 576, 655
BspCNI CTCAG 2 cut(s) 553, 1327
BspDI ATCGAT 1 cut(s) 750
BspEI TCCGGA 1 cut(s) 370
BspFNI CGCG 3 cut(s) 81, 555, 1096
BspLI GGNNCC 7 cut(s) 8, 216, 290, 323, 1092, 1231, 1342
BspPI GGATC 1 cut(s) 1065
BspT107I GGYRCC 3 cut(s) 321, 1090, 1340
BspTNI GGTCTC 1 cut(s) 1097
BsrFI RCCGGY 3 cut(s) 172, 211, 884
BsrI ACTGG 1 cut(s) 1055
BssAI RCCGGY 3 cut(s) 172, 211, 884
BssMI GATC 5 cut(s) 76, 463, 821, 911, 1057
BssNI GRCGYC 6 cut(s) 90, 322, 387, 397, 632, 1162
BssSI CACGAG 2 cut(s) 274, 470
BssT1I CCWWGG 2 cut(s) 868, 956
Bst2BI CACGAG 2 cut(s) 274, 470
Bst2UI CCWGG 5 cut(s) 25, 637, 901, 1065, 1226
Bst4CI ACNGT 4 cut(s) 146, 185, 828, 1234
BstACI GRCGYC 6 cut(s) 90, 322, 387, 397, 632, 1162
BstDEI CTNAG 3 cut(s) 441, 561, 1314
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 4 cut(s) 191, 219, 580, 589
BstFNI CGCG 3 cut(s) 81, 555, 1096
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 8 cut(s) 61, 206, 324, 477, 672, 875, 920, 972
BstKTI GATC 5 cut(s) 79, 466, 824, 914, 1060
BstMAI GTCTC 5 cut(s) 47, 97, 834, 1097, 1202
BstMBI GATC 5 cut(s) 76, 463, 821, 911, 1057
BstMCI CGRYCG 1 cut(s) 199
BstNI CCWGG 5 cut(s) 25, 637, 901, 1065, 1226
BstNSI RCATGY 4 cut(s) 65, 1011, 1135, 1261
BstSLI GKGCMC 4 cut(s) 298, 650, 1247, 1276
BstUI CGCG 3 cut(s) 81, 555, 1096
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 806
Bsu15I ATCGAT 1 cut(s) 750
BsuI GTATCC 1 cut(s) 1213
BsuRI GGCC 5 cut(s) 17, 125, 215, 576, 655
BsuTUI ATCGAT 1 cut(s) 750
BtgI CCRYGG 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 192
BtrI CACGTC 2 cut(s) 626, 645
BtsCI GGATG 4 cut(s) 191, 219, 580, 589
CfoI GCGC 8 cut(s) 61, 206, 324, 477, 672, 875, 920, 972
Cfr10I RCCGGY 3 cut(s) 172, 211, 884
Cfr13I GGNCC 5 cut(s) 146, 170, 214, 289, 349
Cfr9I CCCGGG 1 cut(s) 114
ClaI ATCGAT 1 cut(s) 750
CpoI CGGWCCG 2 cut(s) 170, 349
CseI GACGC 5 cut(s) 70, 371, 395, 405, 640
CsiI ACCWGGT 1 cut(s) 1063
Csp6I GTAC 2 cut(s) 895, 1129
CspI CGGWCCG 2 cut(s) 170, 349
CviAII CATG 5 cut(s) 62, 74, 1008, 1132, 1258
CviQI GTAC 2 cut(s) 895, 1129
DdeI CTNAG 3 cut(s) 441, 561, 1314
DinI GGCGCC 1 cut(s) 323
DpnI GATC 5 cut(s) 78, 465, 823, 913, 1059
DpnII GATC 5 cut(s) 76, 463, 821, 911, 1057
EaeI YGGCCR 1 cut(s) 123
EciI GGCGGA 3 cut(s) 183, 341, 979
Eco130I CCWWGG 2 cut(s) 868, 956
Eco24I GRGCYC 2 cut(s) 11, 308
Eco31I GGTCTC 1 cut(s) 1097
Eco32I GATATC 1 cut(s) 768
Eco47I GGWCC 4 cut(s) 146, 170, 289, 349
Eco88I CYCGRG 5 cut(s) 114, 155, 356, 599, 1014
EcoRII CCWGG 5 cut(s) 23, 635, 899, 1063, 1224
EcoRV GATATC 1 cut(s) 768
EcoT14I CCWWGG 2 cut(s) 868, 956
EcoT38I GRGCYC 2 cut(s) 11, 308
EgeI GGCGCC 1 cut(s) 323
EheI GGCGCC 1 cut(s) 323
ErhI CCWWGG 2 cut(s) 868, 956
Esp3I CGTCTC 3 cut(s) 47, 97, 834
FaeI CATG 5 cut(s) 65, 77, 1011, 1135, 1261
FaqI GGGAC 3 cut(s) 350, 571, 849
FatI CATG 5 cut(s) 61, 73, 1007, 1131, 1257
FauI CCCGC 3 cut(s) 18, 823, 834
FauNDI CATATG 1 cut(s) 1042
FblI GTMKAC 2 cut(s) 84, 1331
Fnu4HI GCNGC 5 cut(s) 66, 126, 129, 132, 978
FokI GGATG 4 cut(s) 178, 206, 567, 576
FriOI GRGCYC 2 cut(s) 11, 308
Fsp4HI GCNGC 5 cut(s) 66, 126, 129, 132, 978
FspBI CTAG 3 cut(s) 957, 1028, 1137
GlaI GCGC 8 cut(s) 60, 205, 323, 476, 671, 874, 919, 971
GluI GCNGC 5 cut(s) 66, 126, 129, 132, 978
GsaI CCCAGC 2 cut(s) 416, 999
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 5 cut(s) 17, 125, 215, 576, 655
HgaI GACGC 5 cut(s) 70, 371, 395, 405, 640
HhaI GCGC 8 cut(s) 61, 206, 324, 477, 672, 875, 920, 972
Hin1I GRCGYC 6 cut(s) 90, 322, 387, 397, 632, 1162
Hin1II CATG 5 cut(s) 65, 77, 1011, 1135, 1261
Hin6I GCGC 8 cut(s) 59, 204, 322, 475, 670, 873, 918, 970
HinP1I GCGC 8 cut(s) 59, 204, 322, 475, 670, 873, 918, 970
HincII GTYRAC 2 cut(s) 85, 1332
HindII GTYRAC 2 cut(s) 85, 1332
HinfI GANTC 7 cut(s) 158, 256, 403, 447, 688, 705, 781
HphI GGTGA 2 cut(s) 302, 816
Hpy166II GTNNAC 5 cut(s) 85, 149, 699, 1245, 1332
Hpy188I TCNGA 3 cut(s) 196, 385, 1207
Hpy188III TCNNGA 3 cut(s) 233, 371, 599
Hpy8I GTNNAC 5 cut(s) 85, 149, 699, 1245, 1332
Hpy99I CGWCG 7 cut(s) 86, 89, 92, 399, 627, 808, 1238
HpyAV CCTTC 3 cut(s) 338, 1305, 1314
HpyCH4III ACNGT 4 cut(s) 146, 185, 828, 1234
HpyCH4IV ACGT 5 cut(s) 90, 625, 644, 740, 1162
HpyCH4V TGCA 6 cut(s) 711, 934, 1111, 1173, 1245, 1267
HpyF3I CTNAG 3 cut(s) 441, 561, 1314
HpySE526I ACGT 5 cut(s) 90, 625, 644, 740, 1162
Hsp92I GRCGYC 6 cut(s) 90, 322, 387, 397, 632, 1162
Hsp92II CATG 5 cut(s) 65, 77, 1011, 1135, 1261
HspAI GCGC 8 cut(s) 59, 204, 322, 475, 670, 873, 918, 970
KasI GGCGCC 1 cut(s) 321
Kpn2I TCCGGA 1 cut(s) 370
KroI GCCGGC 1 cut(s) 211
KroNI GCCGGC 1 cut(s) 213
Kzo9I GATC 5 cut(s) 76, 463, 821, 911, 1057
LmnI GCTCC 2 cut(s) 6, 27
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 3 cut(s) 27, 215, 742
MabI ACCWGGT 1 cut(s) 1063
MaeI CTAG 3 cut(s) 957, 1028, 1137
MaeII ACGT 5 cut(s) 90, 625, 644, 740, 1162
MaeIII GTNAC 6 cut(s) 19, 140, 179, 436, 556, 628
MalI GATC 5 cut(s) 78, 465, 823, 913, 1059
MboI GATC 5 cut(s) 76, 463, 821, 911, 1057
MboII GAAGA 2 cut(s) 736, 811
MhlI GDGCHC 9 cut(s) 11, 32, 298, 308, 567, 650, 1120, 1247, 1276
MluCI AATT 5 cut(s) 238, 379, 712, 876, 1155
Mly113I GGCGCC 1 cut(s) 322
MlyI GAGTC 4 cut(s) 167, 250, 682, 790
MmeI TCCRAC 2 cut(s) 219, 617
MroI TCCGGA 1 cut(s) 370
MroNI GCCGGC 1 cut(s) 211
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 4 cut(s) 35, 885, 929, 1262
Mva1269I GAATGC 1 cut(s) 1071
MvaI CCWGG 5 cut(s) 25, 637, 901, 1065, 1226
MvnI CGCG 3 cut(s) 81, 555, 1096
NaeI GCCGGC 1 cut(s) 213
NarI GGCGCC 1 cut(s) 322
NciI CCSGG 6 cut(s) 115, 116, 293, 333, 347, 834
NdeI CATATG 1 cut(s) 1042
NdeII GATC 5 cut(s) 76, 463, 821, 911, 1057
NgoMIV GCCGGC 1 cut(s) 211
NlaIII CATG 5 cut(s) 65, 77, 1011, 1135, 1261
NlaIV GGNNCC 7 cut(s) 8, 216, 290, 323, 1092, 1231, 1342
NmeAIII GCCGAG 5 cut(s) 76, 554, 631, 787, 802
NmuCI GTSAC 3 cut(s) 179, 556, 628
NspI RCATGY 4 cut(s) 65, 1011, 1135, 1261
OliI CACNNNNGTG 1 cut(s) 885
PaeI GCATGC 2 cut(s) 65, 1261
PaeR7I CTCGAG 1 cut(s) 356
PciI ACATGT 2 cut(s) 1007, 1131
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 468
PctI GAATGC 1 cut(s) 1071
PdiI GCCGGC 1 cut(s) 213
PfeI GAWTC 3 cut(s) 403, 447, 705
PflFI GACNNNGTC 2 cut(s) 89, 287
PfoI TCCNGGA 1 cut(s) 832
PkrI GCNGC 5 cut(s) 67, 127, 130, 133, 979
PleI GAGTC 4 cut(s) 166, 250, 682, 789
PluTI GGCGCC 1 cut(s) 325
PpsI GAGTC 4 cut(s) 166, 250, 682, 789
PscI ACATGT 2 cut(s) 1007, 1131
Psp6I CCWGG 5 cut(s) 23, 635, 899, 1063, 1224
PspFI CCCAGC 2 cut(s) 412, 995
PspGI CCWGG 5 cut(s) 23, 635, 899, 1063, 1224
PspN4I GGNNCC 7 cut(s) 8, 216, 290, 323, 1092, 1231, 1342
PspPI GGNCC 5 cut(s) 146, 170, 214, 289, 349
PspXI VCTCGAGB 1 cut(s) 356
PsyI GACNNNGTC 2 cut(s) 89, 287
RsaI GTAC 2 cut(s) 896, 1130
RsaNI GTAC 2 cut(s) 895, 1129
RseI CAYNNNNRTG 4 cut(s) 35, 885, 929, 1262
Rsr2I CGGWCCG 2 cut(s) 170, 349
RsrII CGGWCCG 2 cut(s) 170, 349
SalI GTCGAC 2 cut(s) 83, 1330
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 5 cut(s) 66, 126, 129, 132, 978
Sau3AI GATC 5 cut(s) 76, 463, 821, 911, 1057
Sau96I GGNCC 5 cut(s) 146, 170, 214, 289, 349
SchI GAGTC 4 cut(s) 167, 250, 682, 790
SduI GDGCHC 9 cut(s) 11, 32, 298, 308, 567, 650, 1120, 1247, 1276
SexAI ACCWGGT 1 cut(s) 1063
SfaNI GCATC 3 cut(s) 27, 215, 742
SfoI GGCGCC 1 cut(s) 323
Sfr274I CTCGAG 1 cut(s) 356
SgrAI CRCCGGYG 1 cut(s) 884
SgrDI CGTCGACG 1 cut(s) 83
SinI GGWCC 4 cut(s) 146, 170, 289, 349
SlaI CTCGAG 1 cut(s) 356
SmaI CCCGGG 1 cut(s) 116
SmiMI CAYNNNNRTG 4 cut(s) 35, 885, 929, 1262
SmlI CTYRAG 2 cut(s) 356, 407
SmoI CTYRAG 2 cut(s) 356, 407
SphI GCATGC 2 cut(s) 65, 1261
SrfI GCCCGGGC 1 cut(s) 116
Sse9I AATT 5 cut(s) 238, 379, 712, 876, 1155
SspDI GGCGCC 1 cut(s) 321
SspMI CTAG 3 cut(s) 957, 1028, 1137
StyI CCWWGG 2 cut(s) 868, 956
TaaI ACNGT 4 cut(s) 146, 185, 828, 1234
TaiI ACGT 5 cut(s) 93, 628, 647, 743, 1165
TaqI TCGA 8 cut(s) 84, 161, 357, 462, 691, 750, 910, 1331
TaqII GACCGA 1 cut(s) 213
TasI AATT 5 cut(s) 238, 379, 712, 876, 1155
TauI GCSGC 4 cut(s) 128, 131, 134, 980
TfiI GAWTC 3 cut(s) 403, 447, 705
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TseFI GTSAC 3 cut(s) 179, 556, 628
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 3 cut(s) 179, 556, 628
TspDTI ATGAA 2 cut(s) 736, 846
TspGWI ACGGA 3 cut(s) 128, 573, 760
TspMI CCCGGG 1 cut(s) 114
Tth111I GACNNNGTC 2 cut(s) 89, 287
VneI GTGCAC 1 cut(s) 1243
VpaK11BI GGWCC 4 cut(s) 146, 170, 289, 349
XceI RCATGY 4 cut(s) 65, 1011, 1135, 1261
XhoI CTCGAG 1 cut(s) 356
XmaI CCCGGG 1 cut(s) 114
XmaJI CCTAGG 1 cut(s) 956
XmiI GTMKAC 2 cut(s) 84, 1331
XspI CTAG 3 cut(s) 957, 1028, 1137
ZraI GACGTC 2 cut(s) 91, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.