Rroxscaffold_54G00443520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000054
OG0000037
Physical Location & Seq
Reverse (-)
60180 .. 68426
8247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_54G00443520.1

Sequence Viewer

Length: 813 bp
ATGGCGCCCCCTTCCGGGGGACTTGTTCCCGGTCCGCCTCTCGAGGACGCTTCTCCGGACTACAATTCGGACGCCTTACGACGCCGGCATTCTCAAGCTGGGCTATTCCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTAGCCGAGATATCCGTTGCCGAGAGTCGTTTAGACATATTGAAGACGACGAAACCACCCGCACGATCACCGTCTCCGGGACGGCGGGGGAACGCTCTTTCATTCAAGTTCCTTGGCGCAATTCACGCCGGTGTTCAGTACGCCCGGGAGGGTCGATCAAGCGCAAGCACCGAAATGCAACACGCAAGACACTTGCCTCCTAGGATAAGGGGGCGCAGAGCCGCAAGACCCTCCGCCCCCGGCGTTGAAACATGTTCTCGGGTCGTTCTGCTAGGCAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCCGATCCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCATTCCTTTGACAACGCTGGCACCGCGTAGGGAGACCCTGCAACGAGCACAGCAGTCGTACATGTCTAGCGACAAAACGCTTGAAATTGGACGTCAAGGGTGCAAAGACCCCAAGCCCACCGAATGTTCTGTATCCGAGACATCAAGCAACAACCTGGGAACCGTCGCAAGGTGCACACCAAAAGGCATGCCAATGCAAGGGGCACAGGCACTACTACGATGTCCTTCCCCTAACCGAATGGCTCAGGGAAGGAAAGGGTCGACAAGAGGCACCATTCCTTTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.57

Weight (kDa)

11.28

Isoelectric Point (pI)

87.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000037)

Species Orthologous Gene IDs
pyrus_communis pycom12555g00040 pycom12555g00090 pycom2132g00020 pycom2247g00020 pycom2303g00010 pycom2303g00070 pycom2303g00140 pycom2575g00040 pycom520g01330 pycom553g00030 pycom961g00020
rosa_laevigata RLG00000005153 RLG00000005811 RLG00000030826 RLG00000030829
rosa_multiflora Rmu_sc0001696.1_g000004
rosa_roxburghii Rroxscaffold_100G00451140 Rroxscaffold_100G00451150 Rroxscaffold_100G00451160 Rroxscaffold_102G00450910 Rroxscaffold_102G00450930 Rroxscaffold_103G00450540 Rroxscaffold_103G00450580 Rroxscaffold_103G00450590 Rroxscaffold_104G00444650 Rroxscaffold_104G00444700 Rroxscaffold_104G00444730 Rroxscaffold_104G00444770 Rroxscaffold_104G00444780 Rroxscaffold_104G00444820 Rroxscaffold_104G00444850 Rroxscaffold_104G00444890 Rroxscaffold_105G00447110 Rroxscaffold_105G00447150 Rroxscaffold_105G00447200 Rroxscaffold_105G00447210 Rroxscaffold_105G00447240 Rroxscaffold_105G00447250 Rroxscaffold_106G00451440 Rroxscaffold_106G00451450 Rroxscaffold_107G00442420 Rroxscaffold_107G00442430 Rroxscaffold_107G00442460 Rroxscaffold_107G00442490 Rroxscaffold_107G00442500 Rroxscaffold_107G00442530 Rroxscaffold_107G00442580 Rroxscaffold_107G00442610 Rroxscaffold_107G00442670 Rroxscaffold_108G00451460 Rroxscaffold_108G00451470 Rroxscaffold_110G00451500 Rroxscaffold_110G00451520 Rroxscaffold_111G00451570 Rroxscaffold_112G00451600 Rroxscaffold_113G00451610 Rroxscaffold_113G00451640 Rroxscaffold_114G00451660 Rroxscaffold_114G00451670 Rroxscaffold_115G00451700 Rroxscaffold_116G00451720 Rroxscaffold_117G00451760 Rroxscaffold_118G00451790 Rroxscaffold_118G00451800 Rroxscaffold_120G00451830 Rroxscaffold_122G00451890 Rroxscaffold_122G00451900 Rroxscaffold_123G00451930 Rroxscaffold_125G00451980 Rroxscaffold_126G00452010 Rroxscaffold_127G00452020 Rroxscaffold_127G00452030 Rroxscaffold_128G00452070 Rroxscaffold_12G00450630 Rroxscaffold_138G00452200 Rroxscaffold_139G00452210 Rroxscaffold_13G00448640 Rroxscaffold_13G00448680 Rroxscaffold_13G00448690 Rroxscaffold_14G00441900 Rroxscaffold_14G00441910 Rroxscaffold_14G00441920 Rroxscaffold_14G00441940 Rroxscaffold_14G00441980 Rroxscaffold_14G00441990 Rroxscaffold_14G00442000 Rroxscaffold_14G00442020 Rroxscaffold_14G00442040 Rroxscaffold_15G00447480 Rroxscaffold_15G00447520 Rroxscaffold_15G00447530 Rroxscaffold_15G00447590 Rroxscaffold_15G00447600 Rroxscaffold_162G00450740 Rroxscaffold_162G00450760 Rroxscaffold_16G00446220 Rroxscaffold_16G00446260 Rroxscaffold_17G00435370 Rroxscaffold_17G00435380 Rroxscaffold_17G00435420 Rroxscaffold_17G00435520 Rroxscaffold_17G00435540 Rroxscaffold_17G00435580 Rroxscaffold_17G00435610 Rroxscaffold_17G00435690 Rroxscaffold_17G00435710 Rroxscaffold_17G00435720 Rroxscaffold_17G00435770 Rroxscaffold_17G00435790 Rroxscaffold_17G00435850 Rroxscaffold_17G00435880 Rroxscaffold_18G00446040 Rroxscaffold_18G00446050 Rroxscaffold_18G00446070 Rroxscaffold_18G00446100 Rroxscaffold_18G00446140 Rroxscaffold_18G00446150 Rroxscaffold_18G00446180 Rroxscaffold_18G00446190 Rroxscaffold_19G00448870 Rroxscaffold_19G00448880 Rroxscaffold_19G00448900 Rroxscaffold_19G00448910 Rroxscaffold_19G00448960 Rroxscaffold_19G00448980 Rroxscaffold_1G00000030 Rroxscaffold_1G00000040 Rroxscaffold_1G00000060 Rroxscaffold_1G00000080 Rroxscaffold_20G00445050 Rroxscaffold_20G00445090 Rroxscaffold_20G00445120 Rroxscaffold_21G00439420 Rroxscaffold_21G00439450 Rroxscaffold_21G00439480 Rroxscaffold_21G00439510 Rroxscaffold_21G00439550 Rroxscaffold_21G00439600 Rroxscaffold_21G00439650 Rroxscaffold_22G00439870 Rroxscaffold_22G00439890 Rroxscaffold_22G00439900 Rroxscaffold_22G00439930 Rroxscaffold_22G00439970 Rroxscaffold_22G00440020 Rroxscaffold_23G00451030 Rroxscaffold_23G00451060 Rroxscaffold_24G00444940 Rroxscaffold_24G00444980 Rroxscaffold_24G00445020 Rroxscaffold_25G00450150 Rroxscaffold_25G00450180 Rroxscaffold_25G00450190 Rroxscaffold_26G00447750 Rroxscaffold_26G00447800 Rroxscaffold_26G00447810 Rroxscaffold_26G00447820 Rroxscaffold_27G00446580 Rroxscaffold_28G00446880 Rroxscaffold_28G00446890 Rroxscaffold_28G00446900 Rroxscaffold_28G00446920 Rroxscaffold_29G00441580 Rroxscaffold_29G00441610 Rroxscaffold_29G00441620 Rroxscaffold_29G00441650 Rroxscaffold_29G00441660 Rroxscaffold_29G00441700 Rroxscaffold_29G00441720 Rroxscaffold_29G00441770 Rroxscaffold_29G00441790 Rroxscaffold_29G00441800 Rroxscaffold_29G00441840 Rroxscaffold_29G00441880 Rroxscaffold_30G00449470 Rroxscaffold_31G00438090 Rroxscaffold_31G00438100 Rroxscaffold_31G00438150 Rroxscaffold_31G00438160 Rroxscaffold_31G00438200 Rroxscaffold_31G00438240 Rroxscaffold_31G00438280 Rroxscaffold_32G00442770 Rroxscaffold_32G00442780 Rroxscaffold_32G00442820 Rroxscaffold_33G00439680 Rroxscaffold_33G00439750 Rroxscaffold_33G00439780 Rroxscaffold_33G00439790 Rroxscaffold_33G00439830 Rroxscaffold_34G00443130 Rroxscaffold_34G00443160 Rroxscaffold_34G00443190 Rroxscaffold_34G00443240 Rroxscaffold_34G00443260 Rroxscaffold_34G00443300 Rroxscaffold_34G00443320 Rroxscaffold_34G00443340 Rroxscaffold_34G00443350 Rroxscaffold_34G00443360 Rroxscaffold_34G00443380 Rroxscaffold_35G00441020 Rroxscaffold_35G00441030 Rroxscaffold_35G00441040 Rroxscaffold_35G00441070 Rroxscaffold_35G00441100 Rroxscaffold_35G00441130 Rroxscaffold_35G00441150 Rroxscaffold_35G00441200 Rroxscaffold_35G00441240 Rroxscaffold_35G00441250 Rroxscaffold_35G00441270 Rroxscaffold_36G00440060 Rroxscaffold_36G00440090 Rroxscaffold_36G00440130 Rroxscaffold_36G00440180 Rroxscaffold_36G00440210 Rroxscaffold_36G00440220 Rroxscaffold_36G00440230 Rroxscaffold_36G00440240 Rroxscaffold_36G00440250 Rroxscaffold_37G00445140 Rroxscaffold_37G00445200 Rroxscaffold_37G00445220 Rroxscaffold_38G00444460 Rroxscaffold_38G00444490 Rroxscaffold_38G00444510 Rroxscaffold_38G00444520 Rroxscaffold_38G00444540 Rroxscaffold_38G00444560 Rroxscaffold_38G00444580 Rroxscaffold_38G00444590 Rroxscaffold_38G00444630 Rroxscaffold_39G00448220 Rroxscaffold_40G00447660 Rroxscaffold_40G00447670 Rroxscaffold_41G00451100 Rroxscaffold_41G00451120 Rroxscaffold_42G00450440 Rroxscaffold_43G00449830 Rroxscaffold_43G00449880 Rroxscaffold_43G00449910 Rroxscaffold_43G00449950 Rroxscaffold_44G00440490 Rroxscaffold_44G00440530 Rroxscaffold_44G00440560 Rroxscaffold_44G00440570 Rroxscaffold_44G00440590 Rroxscaffold_44G00440630 Rroxscaffold_45G00438860 Rroxscaffold_45G00438910 Rroxscaffold_45G00438940 Rroxscaffold_45G00438990 Rroxscaffold_47G00443990 Rroxscaffold_47G00444010 Rroxscaffold_47G00444040 Rroxscaffold_47G00444050 Rroxscaffold_47G00444070 Rroxscaffold_47G00444080 Rroxscaffold_47G00444100 Rroxscaffold_48G00448440 Rroxscaffold_48G00448460 Rroxscaffold_48G00448480 Rroxscaffold_48G00448490 Rroxscaffold_48G00448530 Rroxscaffold_49G00438580 Rroxscaffold_49G00438610 Rroxscaffold_49G00438630 Rroxscaffold_49G00438640 Rroxscaffold_49G00438670 Rroxscaffold_49G00438690 Rroxscaffold_49G00438760 Rroxscaffold_49G00438770 Rroxscaffold_50G00444140 Rroxscaffold_50G00444150 Rroxscaffold_50G00444180 Rroxscaffold_50G00444220 Rroxscaffold_50G00444230 Rroxscaffold_50G00444270 Rroxscaffold_50G00444300 Rroxscaffold_50G00444310 Rroxscaffold_50G00444320 Rroxscaffold_50G00444340 Rroxscaffold_50G00444360 Rroxscaffold_51G00447830 Rroxscaffold_51G00447870 Rroxscaffold_51G00447890 Rroxscaffold_51G00447910 Rroxscaffold_52G00439320 Rroxscaffold_52G00439330 Rroxscaffold_52G00439340 Rroxscaffold_52G00439350 Rroxscaffold_52G00439370 Rroxscaffold_52G00439400 Rroxscaffold_53G00449660 Rroxscaffold_53G00449710 Rroxscaffold_53G00449720 Rroxscaffold_53G00449750 Rroxscaffold_53G00449760 Rroxscaffold_53G00449780 Rroxscaffold_54G00443480 Rroxscaffold_54G00443510 Rroxscaffold_54G00443520 Rroxscaffold_54G00443550 Rroxscaffold_54G00443570 Rroxscaffold_54G00443600 Rroxscaffold_54G00443640 Rroxscaffold_55G00450030 Rroxscaffold_55G00450040 Rroxscaffold_55G00450100 Rroxscaffold_57G00443080 Rroxscaffold_58G00449010 Rroxscaffold_58G00449060 Rroxscaffold_59G00442090 Rroxscaffold_59G00442140 Rroxscaffold_59G00442160 Rroxscaffold_59G00442190 Rroxscaffold_59G00442230 Rroxscaffold_60G00448300 Rroxscaffold_60G00448310 Rroxscaffold_60G00448350 Rroxscaffold_60G00448390 Rroxscaffold_61G00450000 Rroxscaffold_62G00437920 Rroxscaffold_62G00437970 Rroxscaffold_62G00437980 Rroxscaffold_62G00437990 Rroxscaffold_62G00438000 Rroxscaffold_62G00438010 Rroxscaffold_62G00438020 Rroxscaffold_64G00450660 Rroxscaffold_64G00450680 Rroxscaffold_64G00450720 Rroxscaffold_65G00445290 Rroxscaffold_65G00445310 Rroxscaffold_65G00445410 Rroxscaffold_66G00437580 Rroxscaffold_66G00437590 Rroxscaffold_66G00437810 Rroxscaffold_66G00437880 Rroxscaffold_67G00448120 Rroxscaffold_67G00448160 Rroxscaffold_68G00446970 Rroxscaffold_68G00447020 Rroxscaffold_68G00447050 Rroxscaffold_68G00447060 Rroxscaffold_69G00446660 Rroxscaffold_69G00446690 Rroxscaffold_69G00446700 Rroxscaffold_69G00446720 Rroxscaffold_69G00446750 Rroxscaffold_69G00446800 Rroxscaffold_6G00387780 Rroxscaffold_6G00387810 Rroxscaffold_70G00446280 Rroxscaffold_70G00446320 Rroxscaffold_70G00446360 Rroxscaffold_70G00446370 Rroxscaffold_70G00446400 Rroxscaffold_71G00445610 Rroxscaffold_71G00445620 Rroxscaffold_71G00445640 Rroxscaffold_71G00445660 Rroxscaffold_71G00445670 Rroxscaffold_71G00445700 Rroxscaffold_71G00445760 Rroxscaffold_71G00445780 Rroxscaffold_72G00449360 Rroxscaffold_72G00449390 Rroxscaffold_72G00449420 Rroxscaffold_72G00449440 Rroxscaffold_73G00439010 Rroxscaffold_73G00439020 Rroxscaffold_73G00439040 Rroxscaffold_73G00439050 Rroxscaffold_73G00439070 Rroxscaffold_73G00439080 Rroxscaffold_73G00439100 Rroxscaffold_73G00439130 Rroxscaffold_73G00439150 Rroxscaffold_73G00439170 Rroxscaffold_73G00439200 Rroxscaffold_73G00439220 Rroxscaffold_73G00439230 Rroxscaffold_73G00439240 Rroxscaffold_73G00439260 Rroxscaffold_73G00439280 Rroxscaffold_74G00442900 Rroxscaffold_74G00442910 Rroxscaffold_74G00442930 Rroxscaffold_75G00447270 Rroxscaffold_75G00447320 Rroxscaffold_75G00447360 Rroxscaffold_75G00447400 Rroxscaffold_76G00448550 Rroxscaffold_77G00449160 Rroxscaffold_78G00449590 Rroxscaffold_78G00449600 Rroxscaffold_78G00449620 Rroxscaffold_78G00449650 Rroxscaffold_79G00450220 Rroxscaffold_79G00450230 Rroxscaffold_79G00450240 Rroxscaffold_80G00450260 Rroxscaffold_80G00450270 Rroxscaffold_80G00450340 Rroxscaffold_81G00450500 Rroxscaffold_81G00450510 Rroxscaffold_83G00450970 Rroxscaffold_83G00450990 Rroxscaffold_85G00451220 Rroxscaffold_85G00451240 Rroxscaffold_86G00451280 Rroxscaffold_87G00451310 Rroxscaffold_88G00451400 Rroxscaffold_89G00451420 Rroxscaffold_90G00448780 Rroxscaffold_90G00448790 Rroxscaffold_90G00448840 Rroxscaffold_91G00442970 Rroxscaffold_91G00443010 Rroxscaffold_92G00446420 Rroxscaffold_92G00446450 Rroxscaffold_92G00446470 Rroxscaffold_92G00446480 Rroxscaffold_92G00446510 Rroxscaffold_93G00440840 Rroxscaffold_93G00440870 Rroxscaffold_93G00440900 Rroxscaffold_93G00440940 Rroxscaffold_93G00440960 Rroxscaffold_93G00440980 Rroxscaffold_93G00441000 Rroxscaffold_94G00445840 Rroxscaffold_94G00445860 Rroxscaffold_94G00445890 Rroxscaffold_94G00445930 Rroxscaffold_94G00445980 Rroxscaffold_94G00446010 Rroxscaffold_95G00449210 Rroxscaffold_95G00449250 Rroxscaffold_95G00449280 Rroxscaffold_96G00449100 Rroxscaffold_97G00442290 Rroxscaffold_97G00442300 Rroxscaffold_97G00442310 Rroxscaffold_97G00442320 Rroxscaffold_97G00442380 Rroxscaffold_97G00442410 Rroxscaffold_98G00451360 Rroxscaffold_98G00451370 Rroxscaffold_99G00451200
rosa_samantha Rh6CG279700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 405
AatII GACGTC 1 cut(s) 619
Acc36I ACCTGC 1 cut(s) 405
AccB1I GGYRCC 4 cut(s) 4, 417, 544, 794
AccI GTMKAC 1 cut(s) 785
AccII CGCG 1 cut(s) 550
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 8 cut(s) 35, 198, 223, 360, 372, 424, 445, 548
AclWI GGATC 2 cut(s) 444, 519
AcyI GRCGYC 4 cut(s) 5, 72, 82, 616
AfaI GTAC 2 cut(s) 278, 584
AfiI CCNNNNNNNGG 8 cut(s) 14, 15, 16, 17, 215, 459, 693, 722
AflIII ACRYGT 2 cut(s) 389, 585
AgsI TTSAA 4 cut(s) 181, 244, 386, 608
AjnI CCWGG 3 cut(s) 454, 517, 678
AleI CACNNNNGTG 1 cut(s) 267
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw21I GWGCWC 2 cut(s) 574, 701
Alw26I GTCTC 4 cut(s) 216, 472, 551, 656
Alw44I GTGCAC 1 cut(s) 697
AlwI GGATC 2 cut(s) 444, 519
Ama87I CYCGRG 3 cut(s) 41, 282, 396
Aor13HI TCCGGA 1 cut(s) 55
ApaLI GTGCAC 1 cut(s) 697
AspA2I CCTAGG 1 cut(s) 338
AspLEI GCGC 4 cut(s) 7, 257, 302, 354
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 7 cut(s) 16, 30, 110, 216, 283, 284, 378
AsuHPI GGTGA 1 cut(s) 198
AvaI CYCGRG 3 cut(s) 41, 282, 396
AvaII GGWCC 1 cut(s) 32
AvrII CCTAGG 1 cut(s) 338
BaeGI GKGCMC 2 cut(s) 701, 730
BanI GGYRCC 4 cut(s) 4, 417, 544, 794
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 2 cut(s) 574, 701
BceAI ACGGC 2 cut(s) 106, 236
BcgI CGANNNNNNTGC 2 cut(s) 561, 595
BciT130I CCWGG 3 cut(s) 456, 519, 680
BciVI GTATCC 1 cut(s) 667
BcnI CCSGG 7 cut(s) 16, 30, 110, 216, 283, 284, 378
BcoDI GTCTC 4 cut(s) 216, 472, 551, 656
BfaI CTAG 4 cut(s) 339, 410, 482, 591
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 405
BfuI GTATCC 1 cut(s) 667
BisI GCNGC 1 cut(s) 360
BlnI CCTAGG 1 cut(s) 338
BlsI GCNGC 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 32
BmeT110I CYCGRG 3 cut(s) 41, 282, 396
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 5 cut(s) 6, 419, 546, 685, 796
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 188
Bpu10I CCTNAGC 2 cut(s) 139, 768
BpuEI CTTGAG 1 cut(s) 78
BpuMI CCSGG 7 cut(s) 16, 30, 110, 216, 283, 284, 378
BsaHI GRCGYC 4 cut(s) 5, 72, 82, 616
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 7 cut(s) 15, 250, 282, 338, 376, 454, 679
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 8 cut(s) 14, 15, 16, 17, 215, 459, 693, 722
Bse118I RCCGGY 3 cut(s) 84, 266, 420
Bse1I ACTGG 1 cut(s) 509
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 3 cut(s) 456, 519, 680
BseDI CCNNGG 7 cut(s) 15, 250, 282, 338, 376, 454, 679
BseGI GGATG 1 cut(s) 441
BseLI CCNNNNNNNGG 8 cut(s) 14, 15, 16, 17, 215, 459, 693, 722
BseMII CTCAG 1 cut(s) 782
BseNI ACTGG 1 cut(s) 509
BseSI GKGCMC 2 cut(s) 701, 730
BseYI CCCAGC 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 550
BshNI GGYRCC 4 cut(s) 4, 417, 544, 794
BsiHKAI GWGCWC 2 cut(s) 574, 701
BsiHKCI CYCGRG 3 cut(s) 41, 282, 396
BslFI GGGAC 2 cut(s) 33, 231
BslI CCNNNNNNNGG 8 cut(s) 14, 15, 16, 17, 215, 459, 693, 722
BsmAI GTCTC 4 cut(s) 216, 472, 551, 656
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 2 cut(s) 33, 231
BsmI GAATGC 2 cut(s) 88, 525
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 3 cut(s) 41, 282, 396
Bsp1286I GDGCHC 3 cut(s) 574, 701, 730
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 4 cut(s) 203, 293, 449, 511
BspACI CCGC 8 cut(s) 35, 198, 223, 360, 372, 424, 445, 548
BspCNI CTCAG 1 cut(s) 781
BspEI TCCGGA 1 cut(s) 55
BspFNI CGCG 1 cut(s) 550
BspLI GGNNCC 5 cut(s) 6, 419, 546, 685, 796
BspMI ACCTGC 1 cut(s) 405
BspPI GGATC 2 cut(s) 444, 519
BspT107I GGYRCC 4 cut(s) 4, 417, 544, 794
BspTNI GGTCTC 1 cut(s) 551
BsrFI RCCGGY 3 cut(s) 84, 266, 420
BsrI ACTGG 1 cut(s) 509
BssAI RCCGGY 3 cut(s) 84, 266, 420
BssECI CCNNGG 7 cut(s) 15, 250, 282, 338, 376, 454, 679
BssMI GATC 4 cut(s) 203, 293, 449, 511
BssNI GRCGYC 4 cut(s) 5, 72, 82, 616
BssT1I CCWWGG 2 cut(s) 250, 338
Bst2UI CCWGG 3 cut(s) 456, 519, 680
Bst4CI ACNGT 2 cut(s) 210, 688
BstACI GRCGYC 4 cut(s) 5, 72, 82, 616
BstC8I GCNNGC 6 cut(s) 86, 119, 304, 422, 543, 713
BstDEI CTNAG 3 cut(s) 128, 139, 768
BstF5I GGATG 1 cut(s) 441
BstFNI CGCG 1 cut(s) 550
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 4 cut(s) 7, 257, 302, 354
BstKTI GATC 4 cut(s) 206, 296, 452, 514
BstMAI GTCTC 4 cut(s) 216, 472, 551, 656
BstMBI GATC 4 cut(s) 203, 293, 449, 511
BstMWI GCNNNNNNNGC 2 cut(s) 263, 547
BstNI CCWGG 3 cut(s) 456, 519, 680
BstNSI RCATGY 3 cut(s) 393, 589, 715
BstSLI GKGCMC 2 cut(s) 701, 730
BstUI CGCG 1 cut(s) 550
BstV2I GAAGAC 1 cut(s) 188
BsuI GTATCC 1 cut(s) 667
BtsCI GGATG 1 cut(s) 441
BveI ACCTGC 1 cut(s) 405
Cac8I GCNNGC 6 cut(s) 86, 119, 304, 422, 543, 713
CfoI GCGC 4 cut(s) 7, 257, 302, 354
Cfr10I RCCGGY 3 cut(s) 84, 266, 420
Cfr13I GGNCC 1 cut(s) 32
Cfr9I CCCGGG 1 cut(s) 282
CpoI CGGWCCG 1 cut(s) 32
CseI GACGC 3 cut(s) 56, 80, 90
CsiI ACCWGGT 1 cut(s) 517
Csp6I GTAC 2 cut(s) 277, 583
CspI CGGWCCG 1 cut(s) 32
CviAII CATG 3 cut(s) 390, 586, 712
CviJI RGCY 6 cut(s) 98, 103, 143, 359, 640, 767
CviKI_1 RGCY 6 cut(s) 98, 103, 143, 359, 640, 767
CviQI GTAC 2 cut(s) 277, 583
DdeI CTNAG 3 cut(s) 128, 139, 768
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 205, 295, 451, 513
DpnII GATC 4 cut(s) 203, 293, 449, 511
EciI GGCGGA 4 cut(s) 24, 361, 434, 439
Eco130I CCWWGG 2 cut(s) 250, 338
Eco31I GGTCTC 1 cut(s) 551
Eco32I GATATC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 32
Eco88I CYCGRG 3 cut(s) 41, 282, 396
EcoRII CCWGG 3 cut(s) 454, 517, 678
EcoRV GATATC 1 cut(s) 150
EcoT14I CCWWGG 2 cut(s) 250, 338
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 250, 338
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 3 cut(s) 393, 589, 715
FaiI YATR 7 cut(s) 176, 391, 472, 496, 498, 587, 713
FaqI GGGAC 2 cut(s) 33, 231
FatI CATG 3 cut(s) 389, 585, 711
FauI CCCGC 2 cut(s) 205, 216
FauNDI CATATG 1 cut(s) 496
FblI GTMKAC 1 cut(s) 785
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 1 cut(s) 360
FspBI CTAG 4 cut(s) 339, 410, 482, 591
GlaI GCGC 4 cut(s) 6, 256, 301, 353
GluI GCNGC 1 cut(s) 360
GsaI CCCAGC 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 8
HgaI GACGC 3 cut(s) 56, 80, 90
HhaI GCGC 4 cut(s) 7, 257, 302, 354
Hin1I GRCGYC 4 cut(s) 5, 72, 82, 616
Hin1II CATG 3 cut(s) 393, 589, 715
Hin6I GCGC 4 cut(s) 5, 255, 300, 352
HinP1I GCGC 4 cut(s) 5, 255, 300, 352
HincII GTYRAC 1 cut(s) 786
HindII GTYRAC 1 cut(s) 786
HinfI GANTC 3 cut(s) 134, 163, 427
HphI GGTGA 1 cut(s) 198
Hpy166II GTNNAC 2 cut(s) 699, 786
Hpy188I TCNGA 2 cut(s) 70, 661
Hpy188III TCNNGA 2 cut(s) 41, 56
Hpy8I GTNNAC 2 cut(s) 699, 786
Hpy99I CGWCG 3 cut(s) 84, 190, 692
HpyAV CCTTC 3 cut(s) 21, 759, 768
HpyCH4III ACNGT 2 cut(s) 210, 688
HpyCH4IV ACGT 1 cut(s) 616
HpyCH4V TGCA 5 cut(s) 316, 565, 627, 699, 721
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 547
HpyF3I CTNAG 3 cut(s) 128, 139, 768
HpySE526I ACGT 1 cut(s) 616
Hsp92I GRCGYC 4 cut(s) 5, 72, 82, 616
Hsp92II CATG 3 cut(s) 393, 589, 715
HspAI GCGC 4 cut(s) 5, 255, 300, 352
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 55
KroI GCCGGC 2 cut(s) 84, 420
KroNI GCCGGC 2 cut(s) 86, 422
Kzo9I GATC 4 cut(s) 203, 293, 449, 511
LweI GCATC 1 cut(s) 472
MabI ACCWGGT 1 cut(s) 517
MaeI CTAG 4 cut(s) 339, 410, 482, 591
MaeII ACGT 1 cut(s) 616
MaeIII GTNAC 2 cut(s) 123, 437
MalI GATC 4 cut(s) 205, 295, 451, 513
MboI GATC 4 cut(s) 203, 293, 449, 511
MboII GAAGA 1 cut(s) 193
MhlI GDGCHC 3 cut(s) 574, 701, 730
MluCI AATT 3 cut(s) 64, 258, 609
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 172, 436
MnlI CCTC 6 cut(s) 37, 48, 280, 345, 379, 785
MroI TCCGGA 1 cut(s) 55
MroNI GCCGGC 2 cut(s) 84, 420
MslI CAYNNNNRTG 3 cut(s) 267, 311, 716
Mva1269I GAATGC 2 cut(s) 88, 525
MvaI CCWGG 3 cut(s) 456, 519, 680
MvnI CGCG 1 cut(s) 550
MwoI GCNNNNNNNGC 2 cut(s) 263, 547
NaeI GCCGGC 2 cut(s) 86, 422
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 7 cut(s) 16, 30, 110, 216, 283, 284, 378
NdeI CATATG 1 cut(s) 496
NdeII GATC 4 cut(s) 203, 293, 449, 511
NgoMIV GCCGGC 2 cut(s) 84, 420
NlaIII CATG 3 cut(s) 393, 589, 715
NlaIV GGNNCC 5 cut(s) 6, 419, 546, 685, 796
NmeAIII GCCGAG 2 cut(s) 169, 184
NspI RCATGY 3 cut(s) 393, 589, 715
OliI CACNNNNGTG 1 cut(s) 267
PaeI GCATGC 1 cut(s) 715
PaeR7I CTCGAG 1 cut(s) 41
PaqCI CACCTGC 1 cut(s) 405
PciI ACATGT 2 cut(s) 389, 585
PctI GAATGC 2 cut(s) 88, 525
PdiI GCCGGC 2 cut(s) 86, 422
PfeI GAWTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 214
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 2 cut(s) 171, 435
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 171, 435
PscI ACATGT 2 cut(s) 389, 585
Psp6I CCWGG 3 cut(s) 454, 517, 678
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 3 cut(s) 454, 517, 678
PspN4I GGNNCC 5 cut(s) 6, 419, 546, 685, 796
PspPI GGNCC 1 cut(s) 32
RsaI GTAC 2 cut(s) 278, 584
RsaNI GTAC 2 cut(s) 277, 583
RseI CAYNNNNRTG 3 cut(s) 267, 311, 716
Rsr2I CGGWCCG 1 cut(s) 32
RsrII CGGWCCG 1 cut(s) 32
SalI GTCGAC 1 cut(s) 784
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 4 cut(s) 203, 293, 449, 511
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 2 cut(s) 172, 436
SduI GDGCHC 3 cut(s) 574, 701, 730
SetI ASST 6 cut(s) 100, 419, 523, 619, 681, 698
SexAI ACCWGGT 1 cut(s) 517
SfaNI GCATC 1 cut(s) 472
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 41
SgrAI CRCCGGYG 1 cut(s) 266
SinI GGWCC 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 41
SmaI CCCGGG 1 cut(s) 284
SmiMI CAYNNNNRTG 3 cut(s) 267, 311, 716
SmlI CTYRAG 2 cut(s) 41, 93
SmoI CTYRAG 2 cut(s) 41, 93
SphI GCATGC 1 cut(s) 715
Sse9I AATT 3 cut(s) 64, 258, 609
SsiI CCGC 8 cut(s) 35, 198, 223, 360, 372, 424, 445, 548
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 4 cut(s) 339, 410, 482, 591
StyI CCWWGG 2 cut(s) 250, 338
TaaI ACNGT 2 cut(s) 210, 688
TaiI ACGT 1 cut(s) 619
TaqI TCGA 3 cut(s) 42, 292, 785
TasI AATT 3 cut(s) 64, 258, 609
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 142
TspMI CCCGGG 1 cut(s) 282
VneI GTGCAC 1 cut(s) 697
VpaK11BI GGWCC 1 cut(s) 32
XceI RCATGY 3 cut(s) 393, 589, 715
XhoI CTCGAG 1 cut(s) 41
XmaI CCCGGG 1 cut(s) 282
XmaJI CCTAGG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 785
XspI CTAG 4 cut(s) 339, 410, 482, 591
ZraI GACGTC 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.