Rroxscaffold_34G00443360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000034
OG0000037
Physical Location & Seq
Reverse (-)
98868 .. 99581
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_34G00443360.1

Sequence Viewer

Length: 714 bp
ATGCTCACACTCGAACCCTTCTCGAAGATCAAGGTCGGTCGGCGGTGCACCCGCAAAGGGATCCCGCACATTAGCTTCCTTGCGCCTTACGGGTTTAATCACCCGTTGACTCGCACACATGTCGACTCCTTGGTCCGTGTTTCAAGACGGCCGAACGGGGAGCCCGCAGCCGTTACCAGGAGCACGCAGATGCCGAAGCACGCCGAGACGGCGCGTGCTGCCTACCATGATCGCGTCGACGACGTCTCCACGGGCATATCAACAGCCCGGCTTTGGCCGCCGCCGCAATCCGTAACGGTCCACGCCCCGAGTCGAGTGGCGGACCGGCTTGTGACCGTTCCACATCCGACCGAGGCGCATCGCCGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGTACTTGTTTGCTACTCCGTCTCTCGCCCGTATTTAGCCTCGGACGGAATTTACCGCCCGATCGGGGCTGCATTCCCAAACAACCCGACTCGCCGACGCGCCTCGTGGTGCGACAGGTCCGGCACAACGGGGCTCTCACCCTCTATGGCGCCCCTTCCAGGGGACTTGTTCCCGGTCCGCCTCTCGAGGACGCTTCTCCGTACTACAATTCGGACGCCTTACGACGCCGCATTCTCAAGCCGGGCTATTCCCGGTTCGCTCGCCGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.65

Weight (kDa)

11.27

Isoelectric Point (pI)

63.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000037)

Species Orthologous Gene IDs
pyrus_communis pycom12555g00040 pycom12555g00090 pycom2132g00020 pycom2247g00020 pycom2303g00010 pycom2303g00070 pycom2303g00140 pycom2575g00040 pycom520g01330 pycom553g00030 pycom961g00020
rosa_laevigata RLG00000005153 RLG00000005811 RLG00000030826 RLG00000030829
rosa_multiflora Rmu_sc0001696.1_g000004
rosa_roxburghii Rroxscaffold_100G00451140 Rroxscaffold_100G00451150 Rroxscaffold_100G00451160 Rroxscaffold_102G00450910 Rroxscaffold_102G00450930 Rroxscaffold_103G00450540 Rroxscaffold_103G00450580 Rroxscaffold_103G00450590 Rroxscaffold_104G00444650 Rroxscaffold_104G00444700 Rroxscaffold_104G00444730 Rroxscaffold_104G00444770 Rroxscaffold_104G00444780 Rroxscaffold_104G00444820 Rroxscaffold_104G00444850 Rroxscaffold_104G00444890 Rroxscaffold_105G00447110 Rroxscaffold_105G00447150 Rroxscaffold_105G00447200 Rroxscaffold_105G00447210 Rroxscaffold_105G00447240 Rroxscaffold_105G00447250 Rroxscaffold_106G00451440 Rroxscaffold_106G00451450 Rroxscaffold_107G00442420 Rroxscaffold_107G00442430 Rroxscaffold_107G00442460 Rroxscaffold_107G00442490 Rroxscaffold_107G00442500 Rroxscaffold_107G00442530 Rroxscaffold_107G00442580 Rroxscaffold_107G00442610 Rroxscaffold_107G00442670 Rroxscaffold_108G00451460 Rroxscaffold_108G00451470 Rroxscaffold_110G00451500 Rroxscaffold_110G00451520 Rroxscaffold_111G00451570 Rroxscaffold_112G00451600 Rroxscaffold_113G00451610 Rroxscaffold_113G00451640 Rroxscaffold_114G00451660 Rroxscaffold_114G00451670 Rroxscaffold_115G00451700 Rroxscaffold_116G00451720 Rroxscaffold_117G00451760 Rroxscaffold_118G00451790 Rroxscaffold_118G00451800 Rroxscaffold_120G00451830 Rroxscaffold_122G00451890 Rroxscaffold_122G00451900 Rroxscaffold_123G00451930 Rroxscaffold_125G00451980 Rroxscaffold_126G00452010 Rroxscaffold_127G00452020 Rroxscaffold_127G00452030 Rroxscaffold_128G00452070 Rroxscaffold_12G00450630 Rroxscaffold_138G00452200 Rroxscaffold_139G00452210 Rroxscaffold_13G00448640 Rroxscaffold_13G00448680 Rroxscaffold_13G00448690 Rroxscaffold_14G00441900 Rroxscaffold_14G00441910 Rroxscaffold_14G00441920 Rroxscaffold_14G00441940 Rroxscaffold_14G00441980 Rroxscaffold_14G00441990 Rroxscaffold_14G00442000 Rroxscaffold_14G00442020 Rroxscaffold_14G00442040 Rroxscaffold_15G00447480 Rroxscaffold_15G00447520 Rroxscaffold_15G00447530 Rroxscaffold_15G00447590 Rroxscaffold_15G00447600 Rroxscaffold_162G00450740 Rroxscaffold_162G00450760 Rroxscaffold_16G00446220 Rroxscaffold_16G00446260 Rroxscaffold_17G00435370 Rroxscaffold_17G00435380 Rroxscaffold_17G00435420 Rroxscaffold_17G00435520 Rroxscaffold_17G00435540 Rroxscaffold_17G00435580 Rroxscaffold_17G00435610 Rroxscaffold_17G00435690 Rroxscaffold_17G00435710 Rroxscaffold_17G00435720 Rroxscaffold_17G00435770 Rroxscaffold_17G00435790 Rroxscaffold_17G00435850 Rroxscaffold_17G00435880 Rroxscaffold_18G00446040 Rroxscaffold_18G00446050 Rroxscaffold_18G00446070 Rroxscaffold_18G00446100 Rroxscaffold_18G00446140 Rroxscaffold_18G00446150 Rroxscaffold_18G00446180 Rroxscaffold_18G00446190 Rroxscaffold_19G00448870 Rroxscaffold_19G00448880 Rroxscaffold_19G00448900 Rroxscaffold_19G00448910 Rroxscaffold_19G00448960 Rroxscaffold_19G00448980 Rroxscaffold_1G00000030 Rroxscaffold_1G00000040 Rroxscaffold_1G00000060 Rroxscaffold_1G00000080 Rroxscaffold_20G00445050 Rroxscaffold_20G00445090 Rroxscaffold_20G00445120 Rroxscaffold_21G00439420 Rroxscaffold_21G00439450 Rroxscaffold_21G00439480 Rroxscaffold_21G00439510 Rroxscaffold_21G00439550 Rroxscaffold_21G00439600 Rroxscaffold_21G00439650 Rroxscaffold_22G00439870 Rroxscaffold_22G00439890 Rroxscaffold_22G00439900 Rroxscaffold_22G00439930 Rroxscaffold_22G00439970 Rroxscaffold_22G00440020 Rroxscaffold_23G00451030 Rroxscaffold_23G00451060 Rroxscaffold_24G00444940 Rroxscaffold_24G00444980 Rroxscaffold_24G00445020 Rroxscaffold_25G00450150 Rroxscaffold_25G00450180 Rroxscaffold_25G00450190 Rroxscaffold_26G00447750 Rroxscaffold_26G00447800 Rroxscaffold_26G00447810 Rroxscaffold_26G00447820 Rroxscaffold_27G00446580 Rroxscaffold_28G00446880 Rroxscaffold_28G00446890 Rroxscaffold_28G00446900 Rroxscaffold_28G00446920 Rroxscaffold_29G00441580 Rroxscaffold_29G00441610 Rroxscaffold_29G00441620 Rroxscaffold_29G00441650 Rroxscaffold_29G00441660 Rroxscaffold_29G00441700 Rroxscaffold_29G00441720 Rroxscaffold_29G00441770 Rroxscaffold_29G00441790 Rroxscaffold_29G00441800 Rroxscaffold_29G00441840 Rroxscaffold_29G00441880 Rroxscaffold_30G00449470 Rroxscaffold_31G00438090 Rroxscaffold_31G00438100 Rroxscaffold_31G00438150 Rroxscaffold_31G00438160 Rroxscaffold_31G00438200 Rroxscaffold_31G00438240 Rroxscaffold_31G00438280 Rroxscaffold_32G00442770 Rroxscaffold_32G00442780 Rroxscaffold_32G00442820 Rroxscaffold_33G00439680 Rroxscaffold_33G00439750 Rroxscaffold_33G00439780 Rroxscaffold_33G00439790 Rroxscaffold_33G00439830 Rroxscaffold_34G00443130 Rroxscaffold_34G00443160 Rroxscaffold_34G00443190 Rroxscaffold_34G00443240 Rroxscaffold_34G00443260 Rroxscaffold_34G00443300 Rroxscaffold_34G00443320 Rroxscaffold_34G00443340 Rroxscaffold_34G00443350 Rroxscaffold_34G00443360 Rroxscaffold_34G00443380 Rroxscaffold_35G00441020 Rroxscaffold_35G00441030 Rroxscaffold_35G00441040 Rroxscaffold_35G00441070 Rroxscaffold_35G00441100 Rroxscaffold_35G00441130 Rroxscaffold_35G00441150 Rroxscaffold_35G00441200 Rroxscaffold_35G00441240 Rroxscaffold_35G00441250 Rroxscaffold_35G00441270 Rroxscaffold_36G00440060 Rroxscaffold_36G00440090 Rroxscaffold_36G00440130 Rroxscaffold_36G00440180 Rroxscaffold_36G00440210 Rroxscaffold_36G00440220 Rroxscaffold_36G00440230 Rroxscaffold_36G00440240 Rroxscaffold_36G00440250 Rroxscaffold_37G00445140 Rroxscaffold_37G00445200 Rroxscaffold_37G00445220 Rroxscaffold_38G00444460 Rroxscaffold_38G00444490 Rroxscaffold_38G00444510 Rroxscaffold_38G00444520 Rroxscaffold_38G00444540 Rroxscaffold_38G00444560 Rroxscaffold_38G00444580 Rroxscaffold_38G00444590 Rroxscaffold_38G00444630 Rroxscaffold_39G00448220 Rroxscaffold_40G00447660 Rroxscaffold_40G00447670 Rroxscaffold_41G00451100 Rroxscaffold_41G00451120 Rroxscaffold_42G00450440 Rroxscaffold_43G00449830 Rroxscaffold_43G00449880 Rroxscaffold_43G00449910 Rroxscaffold_43G00449950 Rroxscaffold_44G00440490 Rroxscaffold_44G00440530 Rroxscaffold_44G00440560 Rroxscaffold_44G00440570 Rroxscaffold_44G00440590 Rroxscaffold_44G00440630 Rroxscaffold_45G00438860 Rroxscaffold_45G00438910 Rroxscaffold_45G00438940 Rroxscaffold_45G00438990 Rroxscaffold_47G00443990 Rroxscaffold_47G00444010 Rroxscaffold_47G00444040 Rroxscaffold_47G00444050 Rroxscaffold_47G00444070 Rroxscaffold_47G00444080 Rroxscaffold_47G00444100 Rroxscaffold_48G00448440 Rroxscaffold_48G00448460 Rroxscaffold_48G00448480 Rroxscaffold_48G00448490 Rroxscaffold_48G00448530 Rroxscaffold_49G00438580 Rroxscaffold_49G00438610 Rroxscaffold_49G00438630 Rroxscaffold_49G00438640 Rroxscaffold_49G00438670 Rroxscaffold_49G00438690 Rroxscaffold_49G00438760 Rroxscaffold_49G00438770 Rroxscaffold_50G00444140 Rroxscaffold_50G00444150 Rroxscaffold_50G00444180 Rroxscaffold_50G00444220 Rroxscaffold_50G00444230 Rroxscaffold_50G00444270 Rroxscaffold_50G00444300 Rroxscaffold_50G00444310 Rroxscaffold_50G00444320 Rroxscaffold_50G00444340 Rroxscaffold_50G00444360 Rroxscaffold_51G00447830 Rroxscaffold_51G00447870 Rroxscaffold_51G00447890 Rroxscaffold_51G00447910 Rroxscaffold_52G00439320 Rroxscaffold_52G00439330 Rroxscaffold_52G00439340 Rroxscaffold_52G00439350 Rroxscaffold_52G00439370 Rroxscaffold_52G00439400 Rroxscaffold_53G00449660 Rroxscaffold_53G00449710 Rroxscaffold_53G00449720 Rroxscaffold_53G00449750 Rroxscaffold_53G00449760 Rroxscaffold_53G00449780 Rroxscaffold_54G00443480 Rroxscaffold_54G00443510 Rroxscaffold_54G00443520 Rroxscaffold_54G00443550 Rroxscaffold_54G00443570 Rroxscaffold_54G00443600 Rroxscaffold_54G00443640 Rroxscaffold_55G00450030 Rroxscaffold_55G00450040 Rroxscaffold_55G00450100 Rroxscaffold_57G00443080 Rroxscaffold_58G00449010 Rroxscaffold_58G00449060 Rroxscaffold_59G00442090 Rroxscaffold_59G00442140 Rroxscaffold_59G00442160 Rroxscaffold_59G00442190 Rroxscaffold_59G00442230 Rroxscaffold_60G00448300 Rroxscaffold_60G00448310 Rroxscaffold_60G00448350 Rroxscaffold_60G00448390 Rroxscaffold_61G00450000 Rroxscaffold_62G00437920 Rroxscaffold_62G00437970 Rroxscaffold_62G00437980 Rroxscaffold_62G00437990 Rroxscaffold_62G00438000 Rroxscaffold_62G00438010 Rroxscaffold_62G00438020 Rroxscaffold_64G00450660 Rroxscaffold_64G00450680 Rroxscaffold_64G00450720 Rroxscaffold_65G00445290 Rroxscaffold_65G00445310 Rroxscaffold_65G00445410 Rroxscaffold_66G00437580 Rroxscaffold_66G00437590 Rroxscaffold_66G00437810 Rroxscaffold_66G00437880 Rroxscaffold_67G00448120 Rroxscaffold_67G00448160 Rroxscaffold_68G00446970 Rroxscaffold_68G00447020 Rroxscaffold_68G00447050 Rroxscaffold_68G00447060 Rroxscaffold_69G00446660 Rroxscaffold_69G00446690 Rroxscaffold_69G00446700 Rroxscaffold_69G00446720 Rroxscaffold_69G00446750 Rroxscaffold_69G00446800 Rroxscaffold_6G00387780 Rroxscaffold_6G00387810 Rroxscaffold_70G00446280 Rroxscaffold_70G00446320 Rroxscaffold_70G00446360 Rroxscaffold_70G00446370 Rroxscaffold_70G00446400 Rroxscaffold_71G00445610 Rroxscaffold_71G00445620 Rroxscaffold_71G00445640 Rroxscaffold_71G00445660 Rroxscaffold_71G00445670 Rroxscaffold_71G00445700 Rroxscaffold_71G00445760 Rroxscaffold_71G00445780 Rroxscaffold_72G00449360 Rroxscaffold_72G00449390 Rroxscaffold_72G00449420 Rroxscaffold_72G00449440 Rroxscaffold_73G00439010 Rroxscaffold_73G00439020 Rroxscaffold_73G00439040 Rroxscaffold_73G00439050 Rroxscaffold_73G00439070 Rroxscaffold_73G00439080 Rroxscaffold_73G00439100 Rroxscaffold_73G00439130 Rroxscaffold_73G00439150 Rroxscaffold_73G00439170 Rroxscaffold_73G00439200 Rroxscaffold_73G00439220 Rroxscaffold_73G00439230 Rroxscaffold_73G00439240 Rroxscaffold_73G00439260 Rroxscaffold_73G00439280 Rroxscaffold_74G00442900 Rroxscaffold_74G00442910 Rroxscaffold_74G00442930 Rroxscaffold_75G00447270 Rroxscaffold_75G00447320 Rroxscaffold_75G00447360 Rroxscaffold_75G00447400 Rroxscaffold_76G00448550 Rroxscaffold_77G00449160 Rroxscaffold_78G00449590 Rroxscaffold_78G00449600 Rroxscaffold_78G00449620 Rroxscaffold_78G00449650 Rroxscaffold_79G00450220 Rroxscaffold_79G00450230 Rroxscaffold_79G00450240 Rroxscaffold_80G00450260 Rroxscaffold_80G00450270 Rroxscaffold_80G00450340 Rroxscaffold_81G00450500 Rroxscaffold_81G00450510 Rroxscaffold_83G00450970 Rroxscaffold_83G00450990 Rroxscaffold_85G00451220 Rroxscaffold_85G00451240 Rroxscaffold_86G00451280 Rroxscaffold_87G00451310 Rroxscaffold_88G00451400 Rroxscaffold_89G00451420 Rroxscaffold_90G00448780 Rroxscaffold_90G00448790 Rroxscaffold_90G00448840 Rroxscaffold_91G00442970 Rroxscaffold_91G00443010 Rroxscaffold_92G00446420 Rroxscaffold_92G00446450 Rroxscaffold_92G00446470 Rroxscaffold_92G00446480 Rroxscaffold_92G00446510 Rroxscaffold_93G00440840 Rroxscaffold_93G00440870 Rroxscaffold_93G00440900 Rroxscaffold_93G00440940 Rroxscaffold_93G00440960 Rroxscaffold_93G00440980 Rroxscaffold_93G00441000 Rroxscaffold_94G00445840 Rroxscaffold_94G00445860 Rroxscaffold_94G00445890 Rroxscaffold_94G00445930 Rroxscaffold_94G00445980 Rroxscaffold_94G00446010 Rroxscaffold_95G00449210 Rroxscaffold_95G00449250 Rroxscaffold_95G00449280 Rroxscaffold_96G00449100 Rroxscaffold_97G00442290 Rroxscaffold_97G00442300 Rroxscaffold_97G00442310 Rroxscaffold_97G00442320 Rroxscaffold_97G00442380 Rroxscaffold_97G00442410 Rroxscaffold_98G00451360 Rroxscaffold_98G00451370 Rroxscaffold_99G00451200
rosa_samantha Rh6CG279700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AatII GACGTC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 590
AccI GTMKAC 2 cut(s) 123, 237
AccII CGCG 4 cut(s) 214, 234, 442, 541
AclWI GGATC 2 cut(s) 55, 68
AcoI YGGCCR 2 cut(s) 149, 275
AcsI RAATTY 1 cut(s) 490
AcyI GRCGYC 4 cut(s) 243, 591, 657, 667
AfaI GTAC 2 cut(s) 445, 644
AfiI CCNNNNNNNGG 7 cut(s) 57, 177, 273, 506, 600, 601, 602
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 3 cut(s) 144, 395, 418
AjnI CCWGG 2 cut(s) 176, 599
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw21I GWGCWC 2 cut(s) 50, 185
Alw26I GTCTC 3 cut(s) 200, 250, 467
Alw44I GTGCAC 1 cut(s) 46
AlwI GGATC 2 cut(s) 55, 68
Ama87I CYCGRG 2 cut(s) 307, 626
AoxI GGCC 2 cut(s) 149, 275
ApaLI GTGCAC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 167, 218, 510
ApoI RAATTY 1 cut(s) 490
AspLEI GCGC 5 cut(s) 85, 214, 358, 543, 593
AspS9I GGNCC 5 cut(s) 133, 298, 322, 559, 617
AsuC2I CCSGG 4 cut(s) 268, 615, 684, 694
AsuHPI GGTGA 2 cut(s) 92, 571
AvaI CYCGRG 2 cut(s) 307, 626
AvaII GGWCC 5 cut(s) 133, 298, 322, 559, 617
BaeGI GKGCMC 1 cut(s) 50
BamHI GGATCC 1 cut(s) 60
BanI GGYRCC 1 cut(s) 590
BanII GRGCYC 2 cut(s) 165, 577
BauI CACGAG 1 cut(s) 545
Bbv12I GWGCWC 2 cut(s) 50, 185
BbvI GCAGC 3 cut(s) 179, 205, 497
BccI CCATC 1 cut(s) 378
BceAI ACGGC 4 cut(s) 155, 164, 225, 690
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 2 cut(s) 178, 601
BcnI CCSGG 4 cut(s) 268, 615, 684, 694
BcoDI GTCTC 3 cut(s) 200, 250, 467
BfoI RGCGCY 1 cut(s) 594
BglI GCCNNNNNGGC 1 cut(s) 209
BisI GCNGC 8 cut(s) 168, 219, 278, 281, 284, 364, 511, 670
BlsI GCNGC 8 cut(s) 169, 220, 279, 282, 285, 365, 512, 671
Bme1390I CCNGG 6 cut(s) 178, 268, 601, 615, 684, 694
Bme18I GGWCC 5 cut(s) 133, 298, 322, 559, 617
BmeT110I CYCGRG 2 cut(s) 307, 626
BmgT120I GGNCC 5 cut(s) 133, 298, 322, 559, 617
BmiI GGNNCC 3 cut(s) 62, 162, 592
BmrFI CCNGG 6 cut(s) 178, 268, 601, 615, 684, 694
BmsI GCATC 2 cut(s) 180, 367
BpuEI CTTGAG 1 cut(s) 662
BpuMI CCSGG 4 cut(s) 268, 615, 684, 694
BsaHI GRCGYC 4 cut(s) 243, 591, 657, 667
BsaJI CCNNGG 5 cut(s) 129, 249, 351, 481, 600
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 7 cut(s) 57, 177, 273, 506, 600, 601, 602
Bse118I RCCGGY 1 cut(s) 324
BseBI CCWGG 2 cut(s) 178, 601
BseDI CCNNGG 5 cut(s) 129, 249, 351, 481, 600
BseGI GGATG 2 cut(s) 343, 370
BseLI CCNNNNNNNGG 7 cut(s) 57, 177, 273, 506, 600, 601, 602
BseSI GKGCMC 1 cut(s) 50
BseX3I CGGCCG 1 cut(s) 149
BseXI GCAGC 3 cut(s) 179, 205, 497
Bsh1236I CGCG 4 cut(s) 214, 234, 442, 541
Bsh1285I CGRYCG 4 cut(s) 40, 152, 351, 505
BshFI GGCC 2 cut(s) 151, 277
BshNI GGYRCC 1 cut(s) 590
BsiEI CGRYCG 4 cut(s) 40, 152, 351, 505
BsiHKAI GWGCWC 2 cut(s) 50, 185
BsiHKCI CYCGRG 2 cut(s) 307, 626
BsiSI CCGG 6 cut(s) 268, 325, 562, 615, 683, 694
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 7 cut(s) 57, 177, 273, 506, 600, 601, 602
BsmAI GTCTC 3 cut(s) 200, 250, 467
BsmBI CGTCTC 3 cut(s) 200, 250, 467
BsmFI GGGAC 1 cut(s) 618
BsmI GAATGC 2 cut(s) 513, 672
BsnI GGCC 2 cut(s) 151, 277
BsoBI CYCGRG 2 cut(s) 307, 626
Bsp1286I GDGCHC 4 cut(s) 50, 165, 185, 577
Bsp143I GATC 4 cut(s) 27, 60, 229, 502
BspANI GGCC 2 cut(s) 151, 277
BspFNI CGCG 4 cut(s) 214, 234, 442, 541
BspLI GGNNCC 3 cut(s) 62, 162, 592
BspPI GGATC 2 cut(s) 55, 68
BspT107I GGYRCC 1 cut(s) 590
BsrFI RCCGGY 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 5 cut(s) 129, 249, 351, 481, 600
BssMI GATC 4 cut(s) 27, 60, 229, 502
BssNI GRCGYC 4 cut(s) 243, 591, 657, 667
BssSI CACGAG 1 cut(s) 545
BssT1I CCWWGG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 545
Bst2UI CCWGG 2 cut(s) 178, 601
Bst4CI ACNGT 2 cut(s) 298, 337
BstACI GRCGYC 4 cut(s) 243, 591, 657, 667
BstC8I GCNNGC 5 cut(s) 165, 185, 201, 216, 703
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 343, 370
BstFNI CGCG 4 cut(s) 214, 234, 442, 541
BstH2I RGCGCY 1 cut(s) 594
BstHHI GCGC 5 cut(s) 85, 214, 358, 543, 593
BstKTI GATC 4 cut(s) 30, 63, 232, 505
BstMAI GTCTC 3 cut(s) 200, 250, 467
BstMBI GATC 4 cut(s) 27, 60, 229, 502
BstMCI CGRYCG 4 cut(s) 40, 152, 351, 505
BstMWI GCNNNNNNNGC 4 cut(s) 209, 218, 277, 283
BstNI CCWGG 2 cut(s) 178, 601
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 6 cut(s) 176, 266, 599, 613, 682, 692
BstSLI GKGCMC 1 cut(s) 50
BstUI CGCG 4 cut(s) 214, 234, 442, 541
BstV1I GCAGC 3 cut(s) 179, 205, 497
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BstZI CGGCCG 1 cut(s) 149
BsuRI GGCC 2 cut(s) 151, 277
BtgI CCRYGG 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 2 cut(s) 343, 370
Cac8I GCNNGC 5 cut(s) 165, 185, 201, 216, 703
CfoI GCGC 5 cut(s) 85, 214, 358, 543, 593
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 5 cut(s) 133, 298, 322, 559, 617
CpoI CGGWCCG 2 cut(s) 322, 617
CseI GACGC 5 cut(s) 223, 547, 641, 665, 675
Csp6I GTAC 2 cut(s) 444, 643
CspI CGGWCCG 2 cut(s) 322, 617
CviAII CATG 2 cut(s) 119, 227
CviQI GTAC 2 cut(s) 444, 643
DinI GGCGCC 1 cut(s) 592
DpnI GATC 4 cut(s) 29, 62, 231, 504
DpnII GATC 4 cut(s) 27, 60, 229, 502
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 2 cut(s) 149, 275
EagI CGGCCG 1 cut(s) 149
EciI GGCGGA 2 cut(s) 335, 609
EclXI CGGCCG 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 165, 577
Eco47I GGWCC 5 cut(s) 133, 298, 322, 559, 617
Eco52I CGGCCG 1 cut(s) 149
Eco88I CYCGRG 2 cut(s) 307, 626
EcoRII CCWGG 2 cut(s) 176, 599
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 2 cut(s) 165, 577
EgeI GGCGCC 1 cut(s) 592
EheI GGCGCC 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 129
Esp3I CGTCTC 3 cut(s) 200, 250, 467
FaeI CATG 2 cut(s) 122, 230
FaiI YATR 4 cut(s) 120, 228, 257, 588
FaqI GGGAC 1 cut(s) 618
FatI CATG 2 cut(s) 118, 226
FauI CCCGC 3 cut(s) 59, 72, 172
FblI GTMKAC 2 cut(s) 123, 237
Fnu4HI GCNGC 8 cut(s) 168, 219, 278, 281, 284, 364, 511, 670
FokI GGATG 2 cut(s) 330, 357
FriOI GRGCYC 2 cut(s) 165, 577
Fsp4HI GCNGC 8 cut(s) 168, 219, 278, 281, 284, 364, 511, 670
GlaI GCGC 5 cut(s) 84, 213, 357, 542, 592
GluI GCNGC 8 cut(s) 168, 219, 278, 281, 284, 364, 511, 670
HaeII RGCGCY 1 cut(s) 594
HaeIII GGCC 2 cut(s) 151, 277
HapII CCGG 6 cut(s) 268, 325, 562, 615, 683, 694
HgaI GACGC 5 cut(s) 223, 547, 641, 665, 675
HhaI GCGC 5 cut(s) 85, 214, 358, 543, 593
Hin1I GRCGYC 4 cut(s) 243, 591, 657, 667
Hin1II CATG 2 cut(s) 122, 230
Hin6I GCGC 5 cut(s) 83, 212, 356, 541, 591
HinP1I GCGC 5 cut(s) 83, 212, 356, 541, 591
HincII GTYRAC 3 cut(s) 108, 124, 238
HindII GTYRAC 3 cut(s) 108, 124, 238
HinfI GANTC 5 cut(s) 109, 125, 310, 407, 530
HpaII CCGG 6 cut(s) 268, 325, 562, 615, 683, 694
HphI GGTGA 2 cut(s) 92, 571
Hpy166II GTNNAC 5 cut(s) 48, 108, 124, 238, 301
Hpy188I TCNGA 3 cut(s) 348, 485, 655
Hpy188III TCNNGA 4 cut(s) 22, 144, 384, 626
Hpy8I GTNNAC 5 cut(s) 48, 108, 124, 238, 301
Hpy99I CGWCG 5 cut(s) 239, 242, 245, 541, 669
HpyAV CCTTC 2 cut(s) 28, 606
HpyCH4III ACNGT 2 cut(s) 298, 337
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 48, 513
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 218, 277, 283
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 4 cut(s) 243, 591, 657, 667
Hsp92II CATG 2 cut(s) 122, 230
HspAI GCGC 5 cut(s) 83, 212, 356, 541, 591
KasI GGCGCC 1 cut(s) 590
Kzo9I GATC 4 cut(s) 27, 60, 229, 502
LmnI GCTCC 2 cut(s) 160, 180
Lsp1109I GCAGC 3 cut(s) 179, 205, 497
LweI GCATC 2 cut(s) 180, 367
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 4 cut(s) 172, 292, 331, 707
MalI GATC 4 cut(s) 29, 62, 231, 504
MboI GATC 4 cut(s) 27, 60, 229, 502
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 4 cut(s) 50, 165, 185, 577
MluCI AATT 3 cut(s) 389, 490, 649
Mly113I GGCGCC 1 cut(s) 591
MlyI GAGTC 5 cut(s) 103, 119, 319, 401, 524
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 8 cut(s) 346, 391, 448, 491, 554, 593, 622, 633
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 6 cut(s) 268, 325, 562, 615, 683, 694
MspR9I CCNGG 6 cut(s) 178, 268, 601, 615, 684, 694
Mva1269I GAATGC 2 cut(s) 513, 672
MvaI CCWGG 2 cut(s) 178, 601
MvnI CGCG 4 cut(s) 214, 234, 442, 541
MwoI GCNNNNNNNGC 4 cut(s) 209, 218, 277, 283
NarI GGCGCC 1 cut(s) 591
NciI CCSGG 4 cut(s) 268, 615, 684, 694
NdeII GATC 4 cut(s) 27, 60, 229, 502
NlaIII CATG 2 cut(s) 122, 230
NlaIV GGNNCC 3 cut(s) 62, 162, 592
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 626
PciI ACATGT 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PctI GAATGC 2 cut(s) 513, 672
PflFI GACNNNGTC 1 cut(s) 242
PkrI GCNGC 8 cut(s) 169, 220, 279, 282, 285, 365, 512, 671
Ple19I CGATCG 1 cut(s) 505
PleI GAGTC 5 cut(s) 103, 119, 318, 401, 524
PluTI GGCGCC 1 cut(s) 594
PpsI GAGTC 5 cut(s) 103, 119, 318, 401, 524
PscI ACATGT 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 176, 599
PspGI CCWGG 2 cut(s) 176, 599
PspN4I GGNNCC 3 cut(s) 62, 162, 592
PspPI GGNCC 5 cut(s) 133, 298, 322, 559, 617
PsuI RGATCY 1 cut(s) 60
PsyI GACNNNGTC 1 cut(s) 242
PvuI CGATCG 1 cut(s) 505
RsaI GTAC 2 cut(s) 445, 644
RsaNI GTAC 2 cut(s) 444, 643
RseI CAYNNNNRTG 1 cut(s) 188
Rsr2I CGGWCCG 2 cut(s) 322, 617
RsrII CGGWCCG 2 cut(s) 322, 617
SalI GTCGAC 2 cut(s) 122, 236
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 8 cut(s) 168, 219, 278, 281, 284, 364, 511, 670
Sau3AI GATC 4 cut(s) 27, 60, 229, 502
Sau96I GGNCC 5 cut(s) 133, 298, 322, 559, 617
SchI GAGTC 5 cut(s) 103, 119, 319, 401, 524
ScrFI CCNGG 6 cut(s) 178, 268, 601, 615, 684, 694
SduI GDGCHC 4 cut(s) 50, 165, 185, 577
SetI ASST 4 cut(s) 36, 77, 246, 561
SfaNI GCATC 2 cut(s) 180, 367
SfoI GGCGCC 1 cut(s) 592
Sfr274I CTCGAG 1 cut(s) 626
SgrDI CGTCGACG 1 cut(s) 236
SinI GGWCC 5 cut(s) 133, 298, 322, 559, 617
SlaI CTCGAG 1 cut(s) 626
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 626, 677
SmoI CTYRAG 2 cut(s) 626, 677
Sse9I AATT 3 cut(s) 389, 490, 649
SspDI GGCGCC 1 cut(s) 590
StyD4I CCNGG 6 cut(s) 176, 266, 599, 613, 682, 692
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 298, 337
TaiI ACGT 1 cut(s) 246
TaqI TCGA 6 cut(s) 12, 23, 123, 237, 313, 627
TaqII GACCGA 2 cut(s) 26, 365
TasI AATT 3 cut(s) 389, 490, 649
TauI GCSGC 5 cut(s) 280, 283, 286, 366, 672
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 3 cut(s) 167, 218, 510
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 1 cut(s) 418
TspGWI ACGGA 5 cut(s) 125, 280, 449, 502, 630
Tth111I GACNNNGTC 1 cut(s) 242
VneI GTGCAC 1 cut(s) 46
VpaK11BI GGWCC 5 cut(s) 133, 298, 322, 559, 617
XapI RAATTY 1 cut(s) 490
XceI RCATGY 1 cut(s) 122
XhoI CTCGAG 1 cut(s) 626
XmiI GTMKAC 2 cut(s) 123, 237
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.