AT1G05210

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001495
Physical Location & Seq
Forward (+)
1510404 .. 1511683
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05210.1

Sequence Viewer

Length: 507 bp
ATGGGAGCTTTAGGGAAGCTAATCGACGTAGCTCTCTTCGTATACTTTGTTTCAATGGCGATAATTGCGCCGCTCATCGACGGGCAAACCTCACTTCCTTCAGGAATATATCCAGCGTTTCTCACCGATCTGAAAAGCAAGTACATTGCCGATTTTGGAGATTACTTGCTCATGGAGAAGCCGCATTTCCTAGTTGGACTCGTTTGGCATGAGCTTCTGTTCTTATGGCCGCTCTCCATTGCTAACGTCTACGCCATTCTTGCCGGAAAGTCGTGGTTTGGTACCACCTGCTTGTTGTATGGAGCTTCCCTCGTCACTTCCATGGCTGCAATCCTAGGAGATATGATAGGTTCAGGGAAGGCATCTGATCGATTGCTAATGATGTATGTGCCTTTCATGGGTTTTGGGATTCTGGCTGTTCTTCGTGGCTTAGTTTATCGATCCACCAAAAACACTGGATCTTCTGGCAAGAGATCCACTATCATGCCCAGAAGAAAGCTGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2781

Protein Analysis

168

Amino Acids

18.31

Weight (kDa)

9.52

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EBP PF05241 40 - 138 2.8e-13 EXPERA (EXPanded EBP superfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 296
Acc65I GGTACC 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 281
AccBSI CCGCTC 2 cut(s) 73, 232
AccI GTMKAC 2 cut(s) 42, 249
AciI CCGC 3 cut(s) 71, 182, 230
AclWI GGATC 3 cut(s) 435, 466, 468
AcoI YGGCCR 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 2 cut(s) 143, 283
AfiI CCNNNNNNNGG 1 cut(s) 398
AgsI TTSAA 1 cut(s) 54
AluBI AGCT 6 cut(s) 8, 19, 32, 214, 305, 499
AluI AGCT 6 cut(s) 8, 19, 32, 214, 305, 499
AlwI GGATC 3 cut(s) 435, 466, 468
AoxI GGCC 2 cut(s) 227, 501
ApeKI GCWGC 1 cut(s) 326
Asp718I GGTACC 1 cut(s) 281
AspA2I CCTAGG 1 cut(s) 334
AspLEI GCGC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 115
AvrII CCTAGG 1 cut(s) 334
BanI GGYRCC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 313
BfaI CTAG 2 cut(s) 191, 335
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 4 cut(s) 71, 182, 230, 327
BlnI CCTAGG 1 cut(s) 334
BlsI GCNGC 4 cut(s) 72, 183, 231, 328
BmiI GGNNCC 1 cut(s) 283
BmsI GCATC 1 cut(s) 371
BplI GAGNNNNNCTC 2 cut(s) 294, 326
Bsa29I ATCGAT 2 cut(s) 370, 439
BsaJI CCNNGG 2 cut(s) 321, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 460
Bse3DI GCAATG 2 cut(s) 144, 237
BseCI ATCGAT 2 cut(s) 370, 439
BseDI CCNNGG 2 cut(s) 321, 334
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 2 cut(s) 144, 237
BseNI ACTGG 1 cut(s) 460
BseXI GCAGC 1 cut(s) 313
BshFI GGCC 2 cut(s) 229, 503
BshNI GGYRCC 1 cut(s) 281
BshVI ATCGAT 2 cut(s) 370, 439
BsiSI CCGG 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 398
BsnI GGCC 2 cut(s) 229, 503
Bsp143I GATC 5 cut(s) 127, 367, 440, 458, 473
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 3 cut(s) 71, 182, 230
BspANI GGCC 2 cut(s) 229, 503
BspDI ATCGAT 2 cut(s) 370, 439
BspLI GGNNCC 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 296
BspPI GGATC 3 cut(s) 435, 466, 468
BspT107I GGYRCC 1 cut(s) 281
BsrBI CCGCTC 2 cut(s) 73, 232
BsrDI GCAATG 2 cut(s) 144, 237
BsrI ACTGG 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 321, 334
BssMI GATC 5 cut(s) 127, 367, 440, 458, 473
BssNAI GTATAC 1 cut(s) 43
BssT1I CCWWGG 2 cut(s) 321, 334
Bst1107I GTATAC 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 501
BstDEI CTNAG 1 cut(s) 430
BstDSI CCRYGG 1 cut(s) 321
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 5 cut(s) 130, 370, 443, 461, 476
BstMBI GATC 5 cut(s) 127, 367, 440, 458, 473
BstMWI GCNNNNNNNGC 2 cut(s) 65, 260
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 2 cut(s) 458, 473
BstYI RGATCY 2 cut(s) 458, 473
BstZ17I GTATAC 1 cut(s) 43
Bsu15I ATCGAT 2 cut(s) 370, 439
BsuRI GGCC 2 cut(s) 229, 503
BsuTUI ATCGAT 2 cut(s) 370, 439
BtgI CCRYGG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 453
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 501
CfoI GCGC 1 cut(s) 70
ClaI ATCGAT 2 cut(s) 370, 439
Csp6I GTAC 2 cut(s) 142, 282
CviAII CATG 5 cut(s) 172, 209, 322, 397, 484
CviQI GTAC 2 cut(s) 142, 282
DdeI CTNAG 1 cut(s) 430
DpnI GATC 5 cut(s) 129, 369, 442, 460, 475
DpnII GATC 5 cut(s) 127, 367, 440, 458, 473
EaeI YGGCCR 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 321, 334
Eco57I CTGAAG 1 cut(s) 84
EcoT14I CCWWGG 2 cut(s) 321, 334
ErhI CCWWGG 2 cut(s) 321, 334
FaeI CATG 5 cut(s) 175, 212, 325, 400, 487
FatI CATG 5 cut(s) 171, 208, 321, 396, 483
FblI GTMKAC 2 cut(s) 42, 249
Fnu4HI GCNGC 4 cut(s) 71, 182, 230, 327
Fsp4HI GCNGC 4 cut(s) 71, 182, 230, 327
FspBI CTAG 2 cut(s) 191, 335
GlaI GCGC 1 cut(s) 69
GluI GCNGC 4 cut(s) 71, 182, 230, 327
HaeIII GGCC 2 cut(s) 229, 503
HapII CCGG 1 cut(s) 264
HhaI GCGC 1 cut(s) 70
Hin1II CATG 5 cut(s) 175, 212, 325, 400, 487
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 2 cut(s) 198, 409
HpaII CCGG 1 cut(s) 264
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 43, 250
Hpy188I TCNGA 2 cut(s) 132, 367
Hpy188III TCNNGA 1 cut(s) 102
Hpy8I GTNNAC 2 cut(s) 43, 250
Hpy99I CGWCG 2 cut(s) 29, 83
HpyAV CCTTC 2 cut(s) 108, 352
HpyCH4IV ACGT 2 cut(s) 27, 246
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 260
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 2 cut(s) 27, 246
Hsp92II CATG 5 cut(s) 175, 212, 325, 400, 487
HspAI GCGC 1 cut(s) 68
KpnI GGTACC 1 cut(s) 285
Kzo9I GATC 5 cut(s) 127, 367, 440, 458, 473
LmnI GCTCC 2 cut(s) 5, 302
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 371
MaeI CTAG 2 cut(s) 191, 335
MaeII ACGT 2 cut(s) 27, 246
MaeIII GTNAC 1 cut(s) 313
MalI GATC 5 cut(s) 129, 369, 442, 460, 475
MbiI CCGCTC 2 cut(s) 73, 232
MboI GATC 5 cut(s) 127, 367, 440, 458, 473
MboII GAAGA 4 cut(s) 28, 413, 453, 504
MflI RGATCY 2 cut(s) 458, 473
MluCI AATT 1 cut(s) 63
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 2 cut(s) 100, 320
MslI CAYNNNNRTG 2 cut(s) 320, 482
MspI CCGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 65, 260
NcoI CCATGG 1 cut(s) 321
NdeII GATC 5 cut(s) 127, 367, 440, 458, 473
NlaIII CATG 5 cut(s) 175, 212, 325, 400, 487
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 313
PaqCI CACCTGC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 409
PkrI GCNGC 4 cut(s) 72, 183, 231, 328
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 283
PsuI RGATCY 2 cut(s) 458, 473
RsaI GTAC 2 cut(s) 143, 283
RsaNI GTAC 2 cut(s) 142, 282
RseI CAYNNNNRTG 2 cut(s) 320, 482
SatI GCNGC 4 cut(s) 71, 182, 230, 327
Sau3AI GATC 5 cut(s) 127, 367, 440, 458, 473
SchI GAGTC 1 cut(s) 192
SfaNI GCATC 1 cut(s) 371
SmiMI CAYNNNNRTG 2 cut(s) 320, 482
Sse9I AATT 1 cut(s) 63
SsiI CCGC 3 cut(s) 71, 182, 230
SspMI CTAG 2 cut(s) 191, 335
StyI CCWWGG 2 cut(s) 321, 334
TaiI ACGT 2 cut(s) 30, 249
TaqI TCGA 4 cut(s) 24, 78, 370, 439
TasI AATT 1 cut(s) 63
TatI WGTACW 1 cut(s) 141
TauI GCSGC 3 cut(s) 73, 184, 232
TfiI GAWTC 1 cut(s) 409
TscAI CASTG 1 cut(s) 460
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 385
TspRI CASTG 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmaJI CCTAGG 1 cut(s) 334
XmiI GTMKAC 2 cut(s) 42, 249
XspI CTAG 2 cut(s) 191, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.