FvH4_6g43380

Transmembrane protein 97-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001495
Physical Location & Seq
Forward (+)
33573769 .. 33575435
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43380.t1

Sequence Viewer

Length: 504 bp
ATGGGTGCTCTGTTAAAGCTCGTGGACGCCGTACTCTTCGCCTTCTTCATCGTAATCGCGGTGGCGGCGCCGTTGATCGACGCGCAGACGTGTCTGTCTGAGAGTCTCTTCCCAAGCGTCTTGGTTGACCTCAAGAACTGGTACGCGCGTGAGTATGGCGACTATCTCTTTACCGAGAAGCCTCATTTCATCGTGGGACTCGTCTGGCTTGAGCTACTGTTTCAGTGGCCTCTTGCTCTTGCCAACCTCTACGCAATTTTGGCCTCCAAGTCTTGGTTTAACACCACCTGCTTGATCTATGGCGTCTCTGTTTTCACCTCCATGGTGACTATATTGTCGGAATTGATGCAGTCCGGTAAGGCTTCTGATAAGCTGTTGTTTATGTACATCCCTTTCCTGGGGTTGGGTGTTTTGGCCATACTTCGTGGGCTGGTGACACCTTCCAGGACGACTAGTTCAATGATCGGCAAGAGACCTATGTTGGGCAGGAAAAAGAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2781

Protein Analysis

168

Amino Acids

18.56

Weight (kDa)

9.3

Isoelectric Point (pI)

27.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EBP PF05241 41 - 140 1.5e-15 EXPERA (EXPanded EBP superfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
AasI GACNNNNNNGTC 2 cut(s) 94, 334
Acc36I ACCTGC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 67
AccB7I CCANNNNNTGG 1 cut(s) 273
AccII CGCG 4 cut(s) 59, 83, 146, 148
AciI CCGC 2 cut(s) 59, 65
AcoI YGGCCR 1 cut(s) 414
AcyI GRCGYC 3 cut(s) 27, 68, 303
AfaI GTAC 3 cut(s) 33, 143, 386
AfiI CCNNNNNNNGG 5 cut(s) 273, 397, 398, 403, 482
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 1 cut(s) 459
AhlI ACTAGT 1 cut(s) 452
AjiI CACGTC 1 cut(s) 90
AjnI CCWGG 2 cut(s) 396, 443
AloI GAACNNNNNNTCC 2 cut(s) 439, 471
AluBI AGCT 3 cut(s) 19, 214, 373
AluI AGCT 3 cut(s) 19, 214, 373
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 3 cut(s) 110, 310, 466
AoxI GGCC 3 cut(s) 227, 261, 414
AspLEI GCGC 3 cut(s) 70, 85, 148
AsuHPI GGTGA 3 cut(s) 307, 337, 445
BaeI ACNNNNGTAYC 2 cut(s) 133, 166
BalI TGGCCA 1 cut(s) 416
BanI GGYRCC 1 cut(s) 67
BauI CACGAG 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 10
BceAI ACGGC 2 cut(s) 14, 55
BciT130I CCWGG 2 cut(s) 398, 445
BcoDI GTCTC 3 cut(s) 110, 310, 466
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 398, 445
BmgBI CACGTC 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 2 cut(s) 398, 445
BmsI GCATC 1 cut(s) 336
BpuEI CTTGAG 2 cut(s) 116, 230
BsaHI GRCGYC 3 cut(s) 27, 68, 303
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 2 cut(s) 321, 397
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 5 cut(s) 273, 397, 398, 403, 482
Bse1I ACTGG 1 cut(s) 143
BseBI CCWGG 2 cut(s) 398, 445
BseDI CCNNGG 2 cut(s) 321, 397
BseGI GGATG 1 cut(s) 387
BseLI CCNNNNNNNGG 5 cut(s) 273, 397, 398, 403, 482
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 143
Bsh1236I CGCG 4 cut(s) 59, 83, 146, 148
BshFI GGCC 3 cut(s) 229, 263, 416
BshNI GGYRCC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 1 cut(s) 210
BslI CCNNNNNNNGG 5 cut(s) 273, 397, 398, 403, 482
BsmAI GTCTC 3 cut(s) 110, 310, 466
BsmBI CGTCTC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 210
BsnI GGCC 3 cut(s) 229, 263, 416
Bso31I GGTCTC 1 cut(s) 466
Bsp1286I GDGCHC 1 cut(s) 10
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 3 cut(s) 75, 294, 462
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 2 cut(s) 59, 65
BspANI GGCC 3 cut(s) 229, 263, 416
BspCNI CTCAG 1 cut(s) 91
BspFNI CGCG 4 cut(s) 59, 83, 146, 148
BspLI GGNNCC 1 cut(s) 69
BspMI ACCTGC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 466
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 321, 397
BssMI GATC 3 cut(s) 75, 294, 462
BssNI GRCGYC 3 cut(s) 27, 68, 303
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 398, 445
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 2 cut(s) 41, 113
BstACI GRCGYC 3 cut(s) 27, 68, 303
BstAUI TGTACA 1 cut(s) 384
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 387
BstFNI CGCG 4 cut(s) 59, 83, 146, 148
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 3 cut(s) 70, 85, 148
BstKTI GATC 3 cut(s) 78, 297, 465
BstMAI GTCTC 3 cut(s) 110, 310, 466
BstMBI GATC 3 cut(s) 75, 294, 462
BstMWI GCNNNNNNNGC 2 cut(s) 65, 260
BstNI CCWGG 2 cut(s) 398, 445
BstSCI CCNGG 2 cut(s) 396, 443
BstUI CGCG 4 cut(s) 59, 83, 146, 148
BsuRI GGCC 3 cut(s) 229, 263, 416
BtgI CCRYGG 1 cut(s) 321
BtrI CACGTC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 230
BveI ACCTGC 1 cut(s) 296
CfoI GCGC 3 cut(s) 70, 85, 148
CseI GACGC 4 cut(s) 35, 89, 106, 292
Csp6I GTAC 3 cut(s) 32, 142, 385
CviAII CATG 1 cut(s) 322
CviQI GTAC 3 cut(s) 32, 142, 385
DdeI CTNAG 1 cut(s) 99
DinI GGCGCC 1 cut(s) 69
DpnI GATC 3 cut(s) 77, 296, 464
DpnII GATC 3 cut(s) 75, 294, 462
DrdI GACNNNNNNGTC 2 cut(s) 94, 334
DseDI GACNNNNNNGTC 2 cut(s) 94, 334
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 2 cut(s) 41, 113
EarI CTCTTC 2 cut(s) 41, 113
Eco130I CCWWGG 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 466
EcoRII CCWGG 2 cut(s) 396, 443
EcoT14I CCWWGG 1 cut(s) 321
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 310
FaeI CATG 1 cut(s) 325
FaiI YATR 7 cut(s) 156, 300, 323, 332, 383, 419, 479
FaqI GGGAC 1 cut(s) 210
FatI CATG 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 453
GlaI GCGC 3 cut(s) 69, 84, 147
GluI GCNGC 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 3 cut(s) 229, 263, 416
HapII CCGG 1 cut(s) 354
HgaI GACGC 4 cut(s) 35, 89, 106, 292
HhaI GCGC 3 cut(s) 70, 85, 148
Hin1I GRCGYC 3 cut(s) 27, 68, 303
Hin1II CATG 1 cut(s) 325
Hin6I GCGC 3 cut(s) 68, 83, 146
HinP1I GCGC 3 cut(s) 68, 83, 146
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 2 cut(s) 103, 198
HpaII CCGG 1 cut(s) 354
HphI GGTGA 3 cut(s) 307, 337, 445
Hpy166II GTNNAC 2 cut(s) 25, 127
Hpy188I TCNGA 3 cut(s) 100, 340, 367
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 2 cut(s) 25, 127
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 52, 450, 490
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 260
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 3 cut(s) 27, 68, 303
Hsp92II CATG 1 cut(s) 325
HspAI GCGC 3 cut(s) 68, 83, 146
KasI GGCGCC 1 cut(s) 67
Kzo9I GATC 3 cut(s) 75, 294, 462
LweI GCATC 1 cut(s) 336
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 2 cut(s) 325, 433
MalI GATC 3 cut(s) 77, 296, 464
MboI GATC 3 cut(s) 75, 294, 462
MboII GAAGA 3 cut(s) 28, 37, 100
MhlI GDGCHC 1 cut(s) 10
MlsI TGGCCA 1 cut(s) 416
MluCI AATT 2 cut(s) 255, 341
MluNI TGGCCA 1 cut(s) 416
Mly113I GGCGCC 1 cut(s) 68
MlyI GAGTC 2 cut(s) 112, 192
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 6 cut(s) 140, 192, 240, 257, 274, 328
Mox20I TGGCCA 1 cut(s) 416
MscI TGGCCA 1 cut(s) 416
MseI TTAA 2 cut(s) 14, 279
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 416
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 2 cut(s) 398, 445
MvaI CCWGG 2 cut(s) 398, 445
MvnI CGCG 4 cut(s) 59, 83, 146, 148
MwoI GCNNNNNNNGC 2 cut(s) 65, 260
NarI GGCGCC 1 cut(s) 68
NcoI CCATGG 1 cut(s) 321
NdeII GATC 3 cut(s) 75, 294, 462
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 2 cut(s) 325, 433
PaqCI CACCTGC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 198
PflMI CCANNNNNTGG 1 cut(s) 273
PfoI TCCNGGA 1 cut(s) 443
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 2 cut(s) 111, 192
PluTI GGCGCC 1 cut(s) 71
PpsI GAGTC 2 cut(s) 111, 192
Psp6I CCWGG 2 cut(s) 396, 443
PspGI CCWGG 2 cut(s) 396, 443
PspN4I GGNNCC 1 cut(s) 69
RsaI GTAC 3 cut(s) 33, 143, 386
RsaNI GTAC 3 cut(s) 32, 142, 385
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 2 cut(s) 14, 279
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 3 cut(s) 75, 294, 462
SchI GAGTC 2 cut(s) 112, 192
ScrFI CCNGG 2 cut(s) 398, 445
SduI GDGCHC 1 cut(s) 10
SfaNI GCATC 1 cut(s) 336
SfoI GGCGCC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 2 cut(s) 131, 209
SmoI CTYRAG 2 cut(s) 131, 209
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 2 cut(s) 255, 341
SsiI CCGC 2 cut(s) 59, 65
SspDI GGCGCC 1 cut(s) 67
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 2 cut(s) 396, 443
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 78
TasI AATT 2 cut(s) 255, 341
TatI WGTACW 1 cut(s) 384
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 14, 279
Tru9I TTAA 2 cut(s) 14, 279
TscAI CASTG 1 cut(s) 230
TseFI GTSAC 2 cut(s) 325, 433
Tsp45I GTSAC 2 cut(s) 325, 433
TspDTI ATGAA 2 cut(s) 37, 178
TspRI CASTG 1 cut(s) 230
Van91I CCANNNNNTGG 1 cut(s) 273
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.