Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Reverse (-)

6946950 .. 6948136

Gene Structure 1187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g09180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGTGCTCTGTTGAAACTCGTAGACGCCACTCTCTTCGTATTCTTCGTCGTGATTGCGGTGGCTGCGCCGTTTATCGACGGGCAGACATGTCTGCCGCAGAGCTTCTTCCCGGAGGTGTTGGTGGAGCTCAAGAGCTGGTACGCGCGCACCTATGGAGATTATCTGGTGAGCCAGAAGCCTCATTTCTTTGTTGGGATCGTTTGGGTTGAGCTGCTCTTCCAATGGCCTCTGGCGGTTGCCAACTTGTACGGAATTCTGGCCGCCAAGTCTTGGTTGAACACCACCTGTTTGATCTATGGCGCTTCGGTATTTACCTCCATGGTTACAATACTATCAGAGCTTGTTCAGTCCGGCAAGGCTTCTGATAAGCTGTTATATGTGTACTCCCCTTTTTTGGGATTAGGTGTTTTGGCCATGTTGCGGGGGCTGCTGCCGCAATCCAGCACGACTACTTCAAGGATTGGCAAGAGACCTACATTGGGTAGGAAAAAGAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

168

Amino Acids

18.42

Weight (kDa)

9.55

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	41 - 133	1e-14	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	2 cut(s)	146, 148
AciI	CCGC	6 cut(s)	59, 98, 236, 264, 424, 437
AclWI	GGATC	1 cut(s)	206
AcoI	YGGCCR	2 cut(s)	261, 414
AcsI	RAATTY	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	3 cut(s)	143, 251, 386
AfiI	CCNNNNNNNGG	5 cut(s)	273, 397, 398, 423, 482
AflIII	ACRYGT	1 cut(s)	89
AgsI	TTSAA	3 cut(s)	16, 280, 459
AluBI	AGCT	6 cut(s)	105, 130, 138, 214, 343, 373
AluI	AGCT	6 cut(s)	105, 130, 138, 214, 343, 373
Alw21I	GWGCWC	2 cut(s)	10, 132
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	4 cut(s)	227, 261, 414, 498
ApeKI	GCWGC	4 cut(s)	65, 214, 430, 433
ApoI	RAATTY	1 cut(s)	255
AspLEI	GCGC	4 cut(s)	70, 148, 150, 305
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	2 cut(s)	10, 132
BbvI	GCAGC	4 cut(s)	52, 201, 417, 420
BceAI	ACGGC	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	466
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	7 cut(s)	66, 98, 215, 264, 431, 434, 437
BlsI	GCNGC	7 cut(s)	67, 99, 216, 265, 432, 435, 438
Bme1390I	CCNGG	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	5 cut(s)	273, 397, 398, 423, 482
BseDI	CCNNGG	1 cut(s)	321
BseLI	CCNNNNNNNGG	5 cut(s)	273, 397, 398, 423, 482
BsePI	GCGCGC	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	52, 201, 417, 420
Bsh1236I	CGCG	2 cut(s)	146, 148
BshFI	GGCC	4 cut(s)	229, 263, 416, 500
BsiHKAI	GWGCWC	2 cut(s)	10, 132
BsiSI	CCGG	2 cut(s)	113, 354
BslI	CCNNNNNNNGG	5 cut(s)	273, 397, 398, 423, 482
BsmAI	GTCTC	1 cut(s)	466
BsnI	GGCC	4 cut(s)	229, 263, 416, 500
Bso31I	GGTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	2 cut(s)	10, 132
Bsp143I	GATC	2 cut(s)	198, 294
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	6 cut(s)	59, 98, 236, 264, 424, 437
BspANI	GGCC	4 cut(s)	229, 263, 416, 500
BspFNI	CGCG	2 cut(s)	146, 148
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	466
BssECI	CCNNGG	1 cut(s)	321
BssHII	GCGCGC	1 cut(s)	146
BssMI	GATC	2 cut(s)	198, 294
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	321
Bst6I	CTCTTC	2 cut(s)	41, 224
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	321
BstFNI	CGCG	2 cut(s)	146, 148
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	4 cut(s)	70, 148, 150, 305
BstKTI	GATC	2 cut(s)	201, 297
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	2 cut(s)	198, 294
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 430, 436
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	111
BstUI	CGCG	2 cut(s)	146, 148
BstV1I	GCAGC	4 cut(s)	52, 201, 417, 420
BsuRI	GGCC	4 cut(s)	229, 263, 416, 500
BtgI	CCRYGG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	148
CfoI	GCGC	4 cut(s)	70, 148, 150, 305
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	3 cut(s)	142, 250, 385
CviAII	CATG	3 cut(s)	90, 322, 418
CviQI	GTAC	3 cut(s)	142, 250, 385
DpnI	GATC	2 cut(s)	200, 296
DpnII	GATC	2 cut(s)	198, 294
EaeI	YGGCCR	2 cut(s)	261, 414
Eam1104I	CTCTTC	2 cut(s)	41, 224
EarI	CTCTTC	2 cut(s)	41, 224
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	500
Eco24I	GRGCYC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	466
Eco53kI	GAGCTC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	3 cut(s)	93, 325, 421
FaiI	YATR	7 cut(s)	91, 156, 300, 323, 379, 381, 419
FatI	CATG	3 cut(s)	89, 321, 417
FauI	CCCGC	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	7 cut(s)	66, 98, 215, 264, 431, 434, 437
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	7 cut(s)	66, 98, 215, 264, 431, 434, 437
GlaI	GCGC	4 cut(s)	69, 147, 149, 304
GluI	GCNGC	7 cut(s)	66, 98, 215, 264, 431, 434, 437
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	4 cut(s)	229, 263, 416, 500
HapII	CCGG	2 cut(s)	113, 354
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	4 cut(s)	70, 148, 150, 305
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	93, 325, 421
Hin6I	GCGC	4 cut(s)	68, 146, 148, 303
HinP1I	GCGC	4 cut(s)	68, 146, 148, 303
HpaII	CCGG	2 cut(s)	113, 354
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	25, 385
Hpy188I	TCNGA	2 cut(s)	340, 367
Hpy188III	TCNNGA	2 cut(s)	52, 133
Hpy8I	GTNNAC	2 cut(s)	25, 385
Hpy99I	CGWCG	2 cut(s)	53, 83
HpyAV	CCTTC	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 430, 436
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	93, 325, 421
HspAI	GCGC	4 cut(s)	68, 146, 148, 303
Kzo9I	GATC	2 cut(s)	198, 294
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	9 cut(s)	124, 126, 152, 188, 218, 245, 301, 367, 457
Lsp1109I	GCAGC	4 cut(s)	52, 201, 417, 420
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	2 cut(s)	200, 296
MboI	GATC	2 cut(s)	198, 294
MboII	GAAGA	4 cut(s)	28, 37, 100, 211
MhlI	GDGCHC	2 cut(s)	10, 132
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	1 cut(s)	255
MluNI	TGGCCA	1 cut(s)	416
MnlI	CCTC	4 cut(s)	109, 192, 240, 328
Mox20I	TGGCCA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	416
MspI	CCGG	2 cut(s)	113, 354
MspR9I	CCNGG	1 cut(s)	113
MvnI	CGCG	2 cut(s)	146, 148
MwoI	GCNNNNNNNGC	3 cut(s)	65, 430, 436
NciI	CCSGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	198, 294
NlaIII	CATG	3 cut(s)	93, 325, 421
NspI	RCATGY	1 cut(s)	93
PauI	GCGCGC	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	500
PciI	ACATGT	1 cut(s)	89
PciSI	GCTCTTC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PflMI	CCANNNNNTGG	1 cut(s)	273
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	7 cut(s)	67, 99, 216, 265, 432, 435, 438
PscI	ACATGT	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	132
PteI	GCGCGC	1 cut(s)	146
RsaI	GTAC	3 cut(s)	143, 251, 386
RsaNI	GTAC	3 cut(s)	142, 250, 385
SacI	GAGCTC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	224
SatI	GCNGC	7 cut(s)	66, 98, 215, 264, 431, 434, 437
Sau3AI	GATC	2 cut(s)	198, 294
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	2 cut(s)	10, 132
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	255
SseBI	AGGCCT	1 cut(s)	500
SsiI	CCGC	6 cut(s)	59, 98, 236, 264, 424, 437
SstI	GAGCTC	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	321
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	255
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	3 cut(s)	100, 266, 439
TseI	GCWGC	4 cut(s)	65, 214, 430, 433
TspGWI	ACGGA	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	273
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.